TCONS_00058152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058152
Unique NameTCONS_00058152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058152 ID=TCONS_00058152|Name=TCONS_00058152|organism=Clytia hemisphaerica|type=transcript|length=809bp
ACAAATGCTTCAGAGCGATCTTTATCCCTtatttgatgGTATGTGACATT
GTATTTGTGGTTATCTTTCTCTTCGTCCCATCTTTACCACAAGCGTACTA
CCTTGTCTCGTTTTCGTGGTTTGCACTGTTACTTATGAATTGGAGTTGCG
TAAATTGTTGTAATCGTTGGGAAGGAATAAGAATCATACAAGAATGGGGC
AGAGATGATAACGGTAATCCGAAATGTACCAAGCAGTATAGAGAATCAAT
GAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGACCCAAAAG
TGATTGTCCAATGCGAGGCTGCGGAACCTCAAACTTCATGCTGCAGAAAA
CAAAGAGTTATTTGGAGCAATCAGAAAGAGTTTGAGTTTCGACATTGGAT
CGATGTGACTGAACAATATTTGGTGAAATCACAAATCCAAGAAGCGATTT
TTGgtgaattgaaaattgatttcgaATTTGATGACGAAGAAACCAAAGAA
TCGTTTGAACAACACGTTCAGAATCTTGTAAAAGAAGTAAAGCAACATTC
TCCAAACGCTCAAGTCAACATCAAACAAATTTTCCAAGTCCGTGAAAAAG
ATATCAAAACCTACAGACAGTCATTTTATGGAAAGAAGGCTCTTTTTAGA
GAACCATTCGTTTGCCTTCAATGCATTTTCCCTCAAATTGAACTTTcgtt
taaaatattgaaatagtttttcgaaaaaactggcttcaaaagtttattga
ccaaagaaattgtaatcaGAAAAGTAATATCTGATAGAAATATTGTAGCT
GTATAGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_307:78408..80652-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058152 ID=TCONS_00058152|Name=TCONS_00058152|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at scaffold_307:78408..80652- (Clytia hemisphaerica)
ACAAATGCTTCAGAGCGATCTTTATCCCTTGTAAGTTTTAAAAATTCTTT
TAAGAAAGAAATACTTTACATATGAAGCTTAAATATATCCTTCTCAAATC
AAATCGCTCTTAATGTAGTAGCCAAAAGTTAAGTTAAGTTAAGTTAAATC
ATACACGTTTTTTATAAGAACATTCAAAATTTTGAAAGTCTTCAGATACT
CTTAACTTTTTGAGTTTTAAGCCTAAAAAATGTTTTTATATTTCAGCCAT
CGAAGTTTCATTTTCTCATATACTTTGTTCTTATAAAAAACTTGTATCGC
TTTTAAAATATACCTTCAAGGTACAAAGAATTTGAATTTTTAGAACTAAA
GACCTGATTCTTACTAAACTAGCCATAACTTTCATTAAGGTGCCTCCGCA
GCAAAACGAACACATAGAGTTGAATTTGCGTTCAAAAGGATCTTAGCCCT
ACAGTAATTTTTGTTAAGAGTGACCTCTCATCTGAGACAAAATTCTTTCA
AATGCTAACAAATGTGTCAAGGGAGTGATTTACAGTCTACTTAGAGTGAC
ATCCGTGCCTTGTCTTACATGTTTTTTATAAGAACAATTTCATAAGAATA
CGAGGCTGAAATTTGGCCGAAACCTAAGAACAAATTAAAAAGAATCTGAA
CCTCAGATTTCAGAAATTACTGAGAAGTACATGTTTCCATTTTAATTAAT
ATTGACATTTAAAGGCTGAAAAACTCATATAAATTTAAGAGCAGCCGAGC
CAGAATCATATGACTTACTGGTTTTTCCTATAAAAAGCGTATATATCTGA
AGATACTGTTCTTCATATGTTATTTTACTAATGTACACGTTTAGCAACAT
AAATGTTCGAGTACTATAAGTAAAGTAATATTTTTAACCTATGAAGAGCG
CTTTATAACTACTTGTGGTATAAAAAGGAAATTTCCCAGAAAAGGGAATT
TCCTTACATTCATTTAACTCTCCAGGGATAAGAAAAAGACAAACTGACAT
TTCAAAATATATAATCAGATCAAAATAACTCCGGAAAAGTATTTTTGATG
ATGATAAAACAATAGAGAGACCGTTAGATAAGAATGATACCGTTAAGCGG
AACTAAAATACTGAAAAACGCGCGCAAAATTATGAGATGTTTGCCCAACT
TCCTTATGCGTGAAGCTATGAATGCCATCCTCAGAAGCTTTAGGCTTCCT
CCAGTGGCAATGATAGTAACTTTCCAAAGAAATCGGCACTTTTTGATACA
TTTTTCTTTTTTAAACCGACGACATACACCCTTATCTCTCAGCCCCAGTG
GAACTTCTTCTTTTGGAGTGCAATTTTTCTCCATCTAATTTTAGAAGGGA
ATGAAAATAAGTAAATTTTGCAGTGAATTTTCTAGACTGAAATTGTTGGG
TATTTTCTCACCGGGGACATTATTTTGTCACATGGAGGTCTAACAATATT
TATTTCAAATTTTCAGATTTGATGGTATGTGACATTGTATTTGTGGTTAT
CTTTCTCTTCGTCCCATCTTTACCACAAGCGTACTACCTTGTCTCGTTTT
CGTGGTTTGCACTGTTACTTATGAATTGGAGTTGCGTAAATTGTTGTAAT
CGTTGGGAAGGAATAAGAATCATACAAGAATGGGGCAGAGATGATAACGG
TAATCCGAAATGTACCAAGCAGTATAGAGAATCAATGAAAGAAATCAAGG
AAATTCTGGATGAAAATTTACCAAAGGACCCAAAAGTGATTGTCCAATGC
GAGGCTGCGGAACCTCAAACTTCATGCTGCAGAAAACAAAGAGTTATTTG
GAGCAATCAGAAAGAGTTTGAGTTTCGACATTGGATCGATGTGACTGAAC
AATATTTGGTGAAATCACAAATCCAAGAAGCGATTTTTGGTGAATTGAAA
ATTGATTTCGAATTTGATGACGAAGAAACCAAAGAATCGTTTGAACAACA
CGTTCAGAATCTTGTAAAAGAAGTAAAGCAACATTCTCCAAACGCTCAAG
TCAACATCAAACAAATTTTCCAAGTCCGTGAAAAAGATATCAAAACCTAC
AGACAGTCATTTTATGGAAAGAAGGCTCTTTTTAGAGAACCATTCGTTTG
CCTTCAATGCATTTTCCCTCAAATTGAACTTTCGTTTAAAATATTGAAAT
AGTTTTTCGAAAAAACTGGCTTCAAAAGTTTATTGACCAAAGAAATTGTA
ATCAGAAAAGTAATATCTGATAGAAATATTGTAGCTGTATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036643XLOC_036643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058152-exon-scaffold_307-1575043694:80623..80652TCONS_00058152-exon-scaffold_307-1575043694:80623..80652Clytia hemisphaericaexon
TCONS_00058152-exon-scaffold_307-1575043694:78408..79186TCONS_00058152-exon-scaffold_307-1575043694:78408..79186Clytia hemisphaericaexon
TCONS_00058152-exon-scaffold_307-1510915933:80623..80652TCONS_00058152-exon-scaffold_307-1510915933:80623..80652Clytia hemisphaericaexon
TCONS_00058152-exon-scaffold_307-1510915933:78408..79186TCONS_00058152-exon-scaffold_307-1510915933:78408..79186Clytia hemisphaericaexon
TCONS_00058152-exon-scaffold_307-1491911889:80623..80652TCONS_00058152-exon-scaffold_307-1491911889:80623..80652Clytia hemisphaericaexon
TCONS_00058152-exon-scaffold_307-1491911889:78408..79186TCONS_00058152-exon-scaffold_307-1491911889:78408..79186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:78408..80652 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0760204	0	0	0	0	0	1.04367	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top