|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058153 ID=TCONS_00058153|Name=TCONS_00058153|organism=Clytia hemisphaerica|type=transcript|length=968bp
GTACTAGTGGAGGATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTA
TCTAAAATAATGGAATTAATACCGTAtttatttgtttgcttgtttgttAA
CTCAATCTATTTTCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTC
CGGGTTTCTACAAATGCTTCAGAGCGATCTTTATCCCTTatttgatgGTA
TGTGACATTGTATTTGTGGTTATCTTTCTCTTCGTCCCATCTTTACCACA
AGCGTACTACCTTGTCTCGTTTTCGTGGTTTGCACTGTTACTTATGAATT
GGAGTTGCGTAAATTGTTGTAATCGTTGGGAAGGAATAAGAATCATACAA
GAATGGGGCAGAGATGATAACGGTAATCCGAAATGTACCAAGCAGTATAG
AGAATCAATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGG
ACCCAAAAGTGATTGTCCAATGCGAGGCTGCGGAACCTCAAACTTCATGC
TGCAGAAAACAAAGAGTTATTTGGAGCAATCAGAAAGAGTTTGAGTTTCG
ACATTGGATCGATGTGACTGAACAATATTTGGTGAAATCACAAATCCAAG
AAGCGATTTTTGgtgaattgaaaattgatttcgaATTTGATGACGAAGAA
ACCAAAGAATCGTTTGAACAACACGTTCAGAATCTTGTAAAAGAAGTAAA
GCAACATTCTCCAAACGCTCAAGTCAACATCAAACAAATTTTCCAAGTCC
GTGAAAAAGATATCAAAACCTACAGACAGTCATTTTATGGAAAGAAGGCT
CTTTTTAGAGAACCATTCGTTTGCCTTCAATGCATTTTCCCTCAAATTGA
ACTTTcgtttaaaatattgaaatagtttttcgaaaaaactggcttcaaaa
gtttattgaccaaagaaattgtaatcaGAAAAGTAATATCTGATAGAAAT
ATTGTAGCTGTATAGCAT Run BLAST on NCBI transcript from alignment at scaffold_307:78408..86695- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058153 ID=TCONS_00058153|Name=TCONS_00058153|organism=Clytia hemisphaerica|type=transcript|length=8288bp|location=Sequence derived from alignment at scaffold_307:78408..86695- (Clytia hemisphaerica)
GTACTAGTGGAGGATTTCTTTATCGTTTTGGTTGTTCTTTCTGGTTGGTA
TCTAAAATAATGGAATTAATACCGTATTTATTTGTTTGCTTGTTTGTTAA
CTCAATCTATTTTCTTTTCCATCTTTGTACAATCGACAGACGTGCTTCTC
CGGGTTTCTACAAATGCTTCAGAGCGATCTTTATCCCTTGTAAGTTTTAA
GAATCCTTTTAAGAAAGAAATACTTTACACATGAACTTTAGCATATCCTT
CTCAAATCGAATCGCTCTTAATATAGTAGCCAAAAGTTAAGTTAATTTTA
GTTAAAATACACGTGTTCAGATGCTCTTAACTTTTAGAGTTTTAAGCCTA
AAAATGTTCTTAACATGTTCTTATATTTCAGCCATTGAAATCTCATCTTA
TGATATATTTTGCTCTTATAAACGTGCATCACTTTTAGAACAAAGCTTCA
AGGTACATTGAATCGGAAGTTTTGAGGTAAAGACATTATCCGGATATAGT
TACATTATCAGTATGTACTATCTGTTCAATAATAGTGAACATAAATAGTC
AATTCCAGAAGAAATCAGCACTTTTTGATACATTTTTCTTTTTCAAAGCA
ACGGCAATACACCCTTGTCTCCCGGCCCAGGTGGAACTTCTTCCCACAAT
GGGGATGAAAATTGTCTAACGAAATCCGCATGGGAATAGTAATTCTATTG
TTCTCATGTCAAAAAATCGAATGGGGATGGGTTTGGAGTGGAATTTTTCT
ACATTGAATATCTGATGGAAATTAAAATAACAAGTCAAGTTACCATATAT
TAGGGCTGAAATTGTTGGGTATTTTCCCACCAGGAGAAAGTTTAGCCAAA
CATTCCATCTGGTCTATTACGCGGAGGTCTAACAATATTCATTTCAAATT
TTCAGATTTGATGGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCG
TCCCATCTTTACCACAAGCGTACTACCTTGTCTCATTTTCGTGGTTTGCA
CTGTTACTTATAAATTGGAGTTTCATAAATTGTTGGAATCGTTGGGAAGG
AATAAGAATCATAAAAGAATGGGGCACAGATGACAACGGTAATCCAAAAT
GTACCAAGCGGTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGAT
GAAAATTTACCAAAGGAGCCGAAAGTGATTGTTCAATGCGAAGCTGTGGA
ACCTCGAACTTCGTGCTGCAGAAAACAACGCGTTAGTTGGAGCAATCAGA
AAGAGTTTGAATTTCAACATTGGATCGATGTGACTGAACAACATTTGGTG
AAATCACAAATTGAAGAAGCGATTTTTGGTGAATTGAAAATTGATTTCGA
ATTTGATGACGAAGAAACGAAGGAATCATATGAACAACACGTTCAGAATC
TTGTAAAAGAAGCAAAGCAACATTCTCCACACGCTCAAGTCAACGTCAAG
CAACTTTTCCAAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTT
TTATGGCAAGAAGGCTCTTTTTGGAAGACCATGGGTGTGTCTTCAATGCG
TTTTTCCTCAGATCGAACTTTCGTTCAAAATATTGAAATGGTTTCTCGAA
AAAATTGGCTTCAAAAGTTTATTGACCAAAGAAATTGTAATCAGAAAAGT
AATATCTGACAGAAATATTGTATCTGTATAGCATTTGTGATCAATAATTT
TATACCATTTTGAATAGTATAACATGGCGAAGACCTGTTCCACGGGACGT
TACGGTCTTTGTGTCTTAAACATTAAGCTATTCAACTTACAGTAAACCAA
TCAATCTGCTATACAGACCTGTTAGGAAAAATTTATTTACACTATAGCTC
TTAAAACATCCATCCACGAAAGTTAGAATTTAGAAAATATACAAACTCTT
TCAAAATCAGCCTCTTGAAAACACTTTTCATAAAAGCCAGTAAGTTCGGT
TGAAGCTGCGACTGCTTTCATTTTTCTGTGATTTTCAGACTTTACTAAAT
TAACTAATTATTCGCATTCAATAACTTAAATGAGGCCTTTGTGAAATCTT
AAGCTAATAGCATACTCATTTTCGATTAAGCATTTTTCTTTAAAAAGGGT
GAATTTTTTAGCTATTCTTTCACAAATTCCACTTTTTTACTGGAATGAGA
CTTCAATTTATAAATGGTCACTCTAAAAGACGAACACTTCTCATTAGCGG
ACAATTCAATTTTCACCGGACGTTTTCTAGTCCAATCCTCATAAAAAAGA
TTCTAAAAGGCGGACACTCAACTAGCGGACCCTCCAATTAGCAGAAAAGC
TTTTTGCAAGAAATGACCAGAACCCTACTTTCTCTTCTCAAATTAGCGGA
CATCGATGGTCAAACTGATAACTGACTTTAAAAGAATTAGACAGGGTTGA
TTTATCCAAACTATTTATTTCTTAAACACTTCAATGAGTTTCATATCATT
GAACAAATTACTCATAGAAGTTTGGTGAATTTGCATAACAATGATATATA
ACAGGGACCCCAAGACTAACGATTCATAAAAAAGCAAATTGTTGCATTTG
AATAATTATTTTCTTGTCATCTCCATAAAAAAGCACTTTGGACCAAACTT
TTACATATTTAACCCTTTAGTAGTATCTTGTACCAAAATTAGAGCACAGA
ATTGAAAAGTTTCTAAAAGGCGGACACTTCTAAATAGCAGACAATAACCC
TATTCCCAAATAGTGTCTATAGGTATCACTATATGAAGATATCAACTTGG
TATCATAGCCATTTTGAAATAACCACATTCCTAATCAAGGAAACGTAGTA
ACTATTTCGAGCCTTTAAATGGAGAAAATCAAGAGAAAAGAATATATTTT
TACCATTCAAGAGCACTATTAGACGACTTTTTTTATTGTTTTACTTGTTA
TTTTCTTGATACTGAAATAAATGGAAATAGCAATTTATATTTCAATGTGC
TTCATTTTTCATTCGTTGTTCTTCAAGTTCCATATTTGCACCATTGACAA
ATGTGCTTCTCTAGGTTGCACTTCAAAGTGGTCTTTATTCTTCGTAAGTT
TTAAGATGTTTTTGAGAAAGAAATATTTAAGGGCTCTGACCATAGTGAGT
TTTTAATATAGTCATTCAAAATAATCGAAACTTTATAACATTAAAATCAT
CAAAGATATCTGAAGAAATATTTTTGTCATTTTTCTGAGGGCGTGTTTTC
TCTATTTTTAATGACAATCTTTGTGCATCGAGAGCGTTTTTGGCCAATAA
AGTCTAGAGAAAATTTTCTCCGTCATCGTTTAATAATGGTCGTCTTCGTC
TCCGTAGTCACTCATATTCTACTACTCAGTGGCGGCCTGGCAGGGGGTGC
AGGGTGTGCAGTGCACCACCCAGAAAGACCTGAGAGGGGCGCCAACAAAG
CTTTTCAAGGGGGCGCCAAATTTATTTTTGATGTTTCGTTGGGCGATTTG
GCGCTCTTTGACACGTTTTTAGCGCCTTCTATAAGTGCAATGTGAATTTT
TTTTCGCCTGCGGCGCTTCGTTTTATTTTACGAATTTTTTCAAAACTACT
ATCAACATTGAATTGCGAAAAGTCAAAGCAAGAGAAGTGTTGTGTGTCCA
CCAGGGGTTAAAGAGGATACTCCTCCCAAAAATGAGAGATTTATCGAAAC
TGCTCGCTGTGGTTTATGTGGTCTTATGCGGACTAACTTTCTCCTTTTTA
GAATATCTTTTAAGCTGTTTGACATTTCTTACACCATTTTTTTTTGCCTG
CGGCGCCAGAATTACAAATAACCCTTATTCCTGCCAACTTTCGAATTTTT
GGGGACTCTTTCAGCCATTGATCTTTAATGGAGAGTAAAGTAAGACTAGG
AAATAACAAGTAAACAGATATCAAGTTATCAATACCACCACCTTCGTATA
AATAAAAGTTTGTTAACTCAGATTCCGGGCGTTATTTTCAACCAGTCACT
GCTCTTACAGTTTCATATTTTCACTTAATGGTAGATGGGCGCAAATAAGG
ACAAAAATACCAGGGGCGCCAATTTCATAGTTTGCACCACCAAAAAAATT
AAGCCAGGCCGCTACTGACAATACAATACACAAAACGATACCGCATTAAC
TTAGAGGATTTTTGCTCTTTCAATAATTTGCAAAAGTAGGTAGCTCTAAA
ACATTTTGTATACATGCAGCATCGAACAATTAAAAAGTAATCCTCGTAGA
TAATGGATGCACATGATGCGTTTTCAAGCAATCTAGACATTTTAAATCTC
AAAAATTTTCTCTTGAGCGAAACTCTTGGAACGCCGCACCGGGTAAGGCA
GGTACGTCACTCGTCGTAACCGATTTTTGCCAACAAATGGTCAGTGCTAA
ATAAAATCAAAATTTTCAAAAGAATTGTGTGACTAAACAAGGCAAGCTTG
GCTATCAATAGCGTATTAAGGCCGTTTTCAGTCATAAAAGAGCGAAAATT
GACAAAAAATTTCGCGCTCGCTTCGCTCGCCTTTATTCCCTTGAGAACGG
ACCGAATCTGAAACATGTCGGGAAAAATCAAAATATAATAGCCGCATTCT
TTTTCACCGTCCAACACATTTCCTTCCATCAGATAGGGATCAAACATTGG
AATTTGCGTCCTCTGGTTGTACTACCACTCTACTTCTTCGAAGCTTGTTT
TGAAGTATACGGCTTCTCAAACTATGATTGCCCTAACCTCAATTTAAAAT
TAAAAAAGACTTCTTAAGGGTCTGCGAGGAAAAAATCCCACACCAAAGGC
CCACCCTAAGATAAGAGGGTAGTTCTTTGTAACTTTGGCGCGCCAGACCT
AAAACATTGCTTTATTTAAGCTCAAATAGATGTAAAAGATGCCTTAAAAG
GTCGACCCTATCGAGAATAAGGTCACAAAACTGCAGAAAACTTCATATTG
ACGAAGATGTTTGGCATAAGAATAGGTCAAACTGCTTAAAGGAAACCATA
AAAAGGTAATATTTAGCCCAATAAGGTCAAAATTGCTTTAATCAAAGATA
TAAAAGCAAAATCGACGCGTGAACCTGAAAATGGTTTTTTTCGCGCATGA
ATACGTGAATTGGAAAAATTTTGTGCGTGAATACGTGAATTGAGGGTCTC
CTCAGTGTTAGAAATCTACCCGTCCAACCTAATTTAAATTGCTTCCAAAT
CTTTTGTGGTTGTAAGATTTCGAGGGTATTTAACTTTGATCTCAAATATT
ATGACTTTGATTATAAGAAGAATATTACTACATTTCAATATGGTTTCGTC
GCTTTGGGACTAAGACTCGATTGCCAACTTATTAGCGGAAAAACACCAGG
ACTCCGGGTAGTTGAAAAATGAACTTCGGATAAAAAACTAGTTTCCCTAA
TCTCATATCGGCTATATTTGAAAAAATAGTAAAACTTAAGTTTTTAGCAA
TACGCATATTTTAGATAGTGTATATTACTCTTCTTTCAAATCACCTTAAA
CAATAATTATTTAGAATTTATTTTTGAAATATCGTAGTAGTAGTAGTGTT
CCAAGTTTAGTCTCGCCACAGAAGTTGCCTCTAACATTTTTCTGTAATGT
TGGCAAGAGATCAAGATTCTACCTTTACACATTTTTTCTTTTAACGTTAC
AAAATGACAATTACAAACTTTTCATTGGAAAATCTTCTTCTTTTTATCTT
CTTCTGTTCTGAAACATTTCTTTATGTCTTTCGACGTACGTAATACAGAG
AACTTTGGGCTATGCTTGATTATTCGCTGGGGCAACAGTTATGATGATAT
AATTAACATGTTGTAATTAACATTTATAGATTGTATTTTAAGTCATTTTT
GAACAATCACATTCCTAATCAAGGAAATGTAAATATTATGGAGAAAAAAA
TTGAATAGAAAAGATTGTATTTAACACTCGAAAGTACTAGTGGAGGATTT
TTTTATAGTTTTAGTTGTTCTTTCTGAGTTGGTATTCAAAATAATGGAAT
TTGTAGCGTATCTATTTGTTTGCTCTACTTTTAACTTATTCTATTTCATC
TTCCATCTTTGTACAATCAACAGAAGTGCTTCTCCGCGTTTTTACAAATG
CTTCAGAGCGATCTTTATCCCTTGTAAGTTTTAAAAATTCTTTTAAGAAA
GAAATACTTTACATATGAAGCTTAAATATATCCTTCTCAAATCAAATCGC
TCTTAATGTAGTAGCCAAAAGTTAAGTTAAGTTAAGTTAAATCATACACG
TTTTTTATAAGAACATTCAAAATTTTGAAAGTCTTCAGATACTCTTAACT
TTTTGAGTTTTAAGCCTAAAAAATGTTTTTATATTTCAGCCATCGAAGTT
TCATTTTCTCATATACTTTGTTCTTATAAAAAACTTGTATCGCTTTTAAA
ATATACCTTCAAGGTACAAAGAATTTGAATTTTTAGAACTAAAGACCTGA
TTCTTACTAAACTAGCCATAACTTTCATTAAGGTGCCTCCGCAGCAAAAC
GAACACATAGAGTTGAATTTGCGTTCAAAAGGATCTTAGCCCTACAGTAA
TTTTTGTTAAGAGTGACCTCTCATCTGAGACAAAATTCTTTCAAATGCTA
ACAAATGTGTCAAGGGAGTGATTTACAGTCTACTTAGAGTGACATCCGTG
CCTTGTCTTACATGTTTTTTATAAGAACAATTTCATAAGAATACGAGGCT
GAAATTTGGCCGAAACCTAAGAACAAATTAAAAAGAATCTGAACCTCAGA
TTTCAGAAATTACTGAGAAGTACATGTTTCCATTTTAATTAATATTGACA
TTTAAAGGCTGAAAAACTCATATAAATTTAAGAGCAGCCGAGCCAGAATC
ATATGACTTACTGGTTTTTCCTATAAAAAGCGTATATATCTGAAGATACT
GTTCTTCATATGTTATTTTACTAATGTACACGTTTAGCAACATAAATGTT
CGAGTACTATAAGTAAAGTAATATTTTTAACCTATGAAGAGCGCTTTATA
ACTACTTGTGGTATAAAAAGGAAATTTCCCAGAAAAGGGAATTTCCTTAC
ATTCATTTAACTCTCCAGGGATAAGAAAAAGACAAACTGACATTTCAAAA
TATATAATCAGATCAAAATAACTCCGGAAAAGTATTTTTGATGATGATAA
AACAATAGAGAGACCGTTAGATAAGAATGATACCGTTAAGCGGAACTAAA
ATACTGAAAAACGCGCGCAAAATTATGAGATGTTTGCCCAACTTCCTTAT
GCGTGAAGCTATGAATGCCATCCTCAGAAGCTTTAGGCTTCCTCCAGTGG
CAATGATAGTAACTTTCCAAAGAAATCGGCACTTTTTGATACATTTTTCT
TTTTTAAACCGACGACATACACCCTTATCTCTCAGCCCCAGTGGAACTTC
TTCTTTTGGAGTGCAATTTTTCTCCATCTAATTTTAGAAGGGAATGAAAA
TAAGTAAATTTTGCAGTGAATTTTCTAGACTGAAATTGTTGGGTATTTTC
TCACCGGGGACATTATTTTGTCACATGGAGGTCTAACAATATTTATTTCA
AATTTTCAGATTTGATGGTATGTGACATTGTATTTGTGGTTATCTTTCTC
TTCGTCCCATCTTTACCACAAGCGTACTACCTTGTCTCGTTTTCGTGGTT
TGCACTGTTACTTATGAATTGGAGTTGCGTAAATTGTTGTAATCGTTGGG
AAGGAATAAGAATCATACAAGAATGGGGCAGAGATGATAACGGTAATCCG
AAATGTACCAAGCAGTATAGAGAATCAATGAAAGAAATCAAGGAAATTCT
GGATGAAAATTTACCAAAGGACCCAAAAGTGATTGTCCAATGCGAGGCTG
CGGAACCTCAAACTTCATGCTGCAGAAAACAAAGAGTTATTTGGAGCAAT
CAGAAAGAGTTTGAGTTTCGACATTGGATCGATGTGACTGAACAATATTT
GGTGAAATCACAAATCCAAGAAGCGATTTTTGGTGAATTGAAAATTGATT
TCGAATTTGATGACGAAGAAACCAAAGAATCGTTTGAACAACACGTTCAG
AATCTTGTAAAAGAAGTAAAGCAACATTCTCCAAACGCTCAAGTCAACAT
CAAACAAATTTTCCAAGTCCGTGAAAAAGATATCAAAACCTACAGACAGT
CATTTTATGGAAAGAAGGCTCTTTTTAGAGAACCATTCGTTTGCCTTCAA
TGCATTTTCCCTCAAATTGAACTTTCGTTTAAAATATTGAAATAGTTTTT
CGAAAAAACTGGCTTCAAAAGTTTATTGACCAAAGAAATTGTAATCAGAA
AAGTAATATCTGATAGAAATATTGTAGCTGTATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058153-exon-scaffold_307-1575043694:86507..86695 | TCONS_00058153-exon-scaffold_307-1575043694:86507..86695 | Clytia hemisphaerica | exon |
| TCONS_00058153-exon-scaffold_307-1575043694:78408..79186 | TCONS_00058153-exon-scaffold_307-1575043694:78408..79186 | Clytia hemisphaerica | exon |
| TCONS_00058153-exon-scaffold_307-1510915933:86507..86695 | TCONS_00058153-exon-scaffold_307-1510915933:86507..86695 | Clytia hemisphaerica | exon |
| TCONS_00058153-exon-scaffold_307-1510915933:78408..79186 | TCONS_00058153-exon-scaffold_307-1510915933:78408..79186 | Clytia hemisphaerica | exon |
| TCONS_00058153-exon-scaffold_307-1491911889:86507..86695 | TCONS_00058153-exon-scaffold_307-1491911889:86507..86695 | Clytia hemisphaerica | exon |
| TCONS_00058153-exon-scaffold_307-1491911889:78408..79186 | TCONS_00058153-exon-scaffold_307-1491911889:78408..79186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:78408..86695 - |
Blast
The following BLAST results are available for this feature:
|
