TCONS_00058157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058157
Unique NameTCONS_00058157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058157 ID=TCONS_00058157|Name=TCONS_00058157|organism=Clytia hemisphaerica|type=transcript|length=1904bp
attcttaactttttgagttttaagcctaaaaaatgttcttaacatgttct
tatatttGAGCCATCAAAGTTCCAtcatttatatattttgttcttataaa
aaacgtccATCACCTTTAGAACAAAGCTTCAAGGTACAAAGAATTGGAAG
TTTTGAGCTAAAGACCTTATTTGGATATTGCCTTATTATCAttttgatgG
TAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTATACCA
CAAGCATACTACCTTGTCTCATTTTCGTGGTTTGCACTGTTACTTATAAA
TTGGAGTTGCGTAAATTGTTGGAATCGTTGGGCAGGAATAAGAATCGAAA
AAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACCAAGCGGTAT
AGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAA
GGAGCCGAAAGTGATTGTTCAATGCGAGGCTGTGGAACCTCGAACTTCGT
GCTGCAGAAAACAAAGAGTTATTTGGAGCAATCAGAAAGAGTTTGAATTT
CAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAATTGA
AGAAGCGATTTTCGgtgaattgaaaattgatttcgaATTTGGTGACGAAG
AAACAAAAGAGTCATATGAACAACACGTTCAGAATCTTGTGAAAGAAGCA
AAGCAACATTCTCCAAACGATCAAGTCAATATCAAACAAATTTTCGAAGT
CGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTatggaaagaaaa
ttctttttggaaAACCATTCGTGTGTCTTCAAGGTGTTTTTCCTCAAATC
GAACTTtcgttcaaaattttaaaatggctTCTCGAAAAAATTGGTTGCAA
AAGTTTATTAACCAAAggaattgtaaacaaaaaagtaatatgTGATAGAA
ATATTGTAGCTGTATAGCATTTGTGATCAATAATTTTGTACCATTTTAAA
TGATATAACAGAGTGGAGACTAATTGCACTAATGGCTTGTCCCACGGTAC
GTTACTGTCTTTGTGTCTAAAATATAAAAGTAAAtgccgctacccactca
gcattttatggacGTCGAACAAGGCGCACAgcttaattattgcataaatt
acataaatcaagcCTTCAAAGGCTGTCGCCTTGGGCGcaacaagagttga
aacttttcaacttttttcgctaCGCTGTACGGCTTCtcaattgttctttt
ttaaatagccAATCAGAATAGACATTTAACTCTCTTGCACCGTGTGCAAA
AAGATATCAACAATAGAAACAAGAAAAATGTACAGCATATCTCCCCTTTA
TTTTGGATCAGTGGAATGGGAAAAGCGTTCAGCGACCAAAGCGCCCGAGC
TGTGCGCCTTGttcgccgaccataaaatgctgagtgggtagcggcctttA
ACCAATCAATCTGCTAGACAGACCTGTTGGGAAAAGTTTATTTACATTCA
CGAAAGTTTAGAAATTGTAGAAACTCCTTCAAAGTTCGCTTCATTTTTCA
TAAAGCCAGTAAATTTGGCTGAAGCTGCGCCTGTTATTATTTTTCTGTGG
TCTTCAGGCTTAATCAAATTAACTAATTATTCATTTAATTATTGGAATGA
GGTCTTTATGAAATCTTAAGCTAGCGTCATTTATCTATTCTTAAGGCGTG
GTTACATTACATTAgatggttttttttataagcaactgtCAGGCTCATGt
atgcttaagttttcaaagcatccaggcatagtttatgcttattatatgct
taagaatcatgcttatgattcaccccgagccaagtttttaatgcaatttc
aaaaattttgtaaaattttgctcAGATTTTGGGAGTGTGGaatttttact
tgac
Run BLAST on NCBI

protein sequence of TCONS_00058157-protein

>TCONS_00058157-protein ID=TCONS_00058157-protein|Name=TCONS_00058157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MFLYLSHQSSIIYIFCSYKKRPSPLEQSFKVQRIGSFELKTLFGYCLIII
LMVSDIVFVVIFLFVPSIPQAYYLVSFSWFALLLINWSCVNCWNRWAGIR
IEKEWGTDDNGNPKCTKRYRHSMKEIKEILDENLPKEPKVIVQCEAVEPR
TSCCRKQRVIWSNQKEFEFQHWIDVTEQHLVKSQIEEAIFGELKIDFEFG
DEETKESYEQHVQNLVKEAKQHSPNDQVNIKQIFEVGEKDIKTYRRSFYG
KKILFGKPFVCLQGVFPQIELSFKILKWLLEKIGCKSLLTKGIVNKKVIC
DRNIVAV
Run BLAST on NCBI

transcript from alignment at scaffold_307:90520..92811-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058157 ID=TCONS_00058157|Name=TCONS_00058157|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at scaffold_307:90520..92811- (Clytia hemisphaerica)
ATTCTTAACTTTTTGAGTTTTAAGCCTAAAAAATGTTCTTAACATGTTCT
TATATTTGAGCCATCAAAGTTCCATCATTTATATATTTTGTTCTTATAAA
AAACGTCCATCACCTTTAGAACAAAGCTTCAAGGTACAAAGAATTGGAAG
TTTTGAGCTAAAGACCTTATTTGGATATTGCCTTATTATCAGTATGTACT
ATCTGTTCAATAATTGTGAACTAAGGTCGGCTCAAAGAAATCGGCAATTT
TTGATACATTTTTCTTCTTCAAACCGACGACATACGTCGTTATCTCTTGG
CTTCGGTGGAACTTTTTCTCACATTGCAGATGAAACTTGTGTACCGTAAT
CCAAATGAGAATATAAATTCTATTGTTCTCAGGCCATAAAGTCGAATTGG
AATGGTTTTGAAATGCAATTTTTTTCCATTGAATTTCAGATAGGAATGAA
AATAAGTCAATTTTCCAGTGAGGCTGAAATAGGTGGGTATTTTCCCACCG
GGGATAAAGTTTAGCCAAATTTTCCATCGGGTCTATCACCTCTCTCGGAG
GTCTAACAATATTTATTTCAAATTTTCAGTTTTGATGGTAAGTGACATTG
TATTTGTGGTGATCTTTCTCTTCGTCCCATCTATACCACAAGCATACTAC
CTTGTCTCATTTTCGTGGTTTGCACTGTTACTTATAAATTGGAGTTGCGT
AAATTGTTGGAATCGTTGGGCAGGAATAAGAATCGAAAAAGAATGGGGCA
CAGATGACAACGGTAATCCAAAATGTACCAAGCGGTATAGACACTCGATG
AAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGAGCCGAAAGT
GATTGTTCAATGCGAGGCTGTGGAACCTCGAACTTCGTGCTGCAGAAAAC
AAAGAGTTATTTGGAGCAATCAGAAAGAGTTTGAATTTCAACATTGGATC
GATGTGACTGAACAACATTTGGTGAAATCACAAATTGAAGAAGCGATTTT
CGGTGAATTGAAAATTGATTTCGAATTTGGTGACGAAGAAACAAAAGAGT
CATATGAACAACACGTTCAGAATCTTGTGAAAGAAGCAAAGCAACATTCT
CCAAACGATCAAGTCAATATCAAACAAATTTTCGAAGTCGGTGAAAAAGA
TATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAAATTCTTTTTGGAA
AACCATTCGTGTGTCTTCAAGGTGTTTTTCCTCAAATCGAACTTTCGTTC
AAAATTTTAAAATGGCTTCTCGAAAAAATTGGTTGCAAAAGTTTATTAAC
CAAAGGAATTGTAAACAAAAAAGTAATATGTGATAGAAATATTGTAGCTG
TATAGCATTTGTGATCAATAATTTTGTACCATTTTAAATGATATAACAGA
GTGGAGACTAATTGCACTAATGGCTTGTCCCACGGTACGTTACTGTCTTT
GTGTCTAAAATATAAAAGTAAATGCCGCTACCCACTCAGCATTTTATGGA
CGTCGAACAAGGCGCACAGCTTAATTATTGCATAAATTACATAAATCAAG
CCTTCAAAGGCTGTCGCCTTGGGCGCAACAAGAGTTGAAACTTTTCAACT
TTTTTCGCTACGCTGTACGGCTTCTCAATTGTTCTTTTTTAAATAGCCAA
TCAGAATAGACATTTAACTCTCTTGCACCGTGTGCAAAAAGATATCAACA
ATAGAAACAAGAAAAATGTACAGCATATCTCCCCTTTATTTTGGATCAGT
GGAATGGGAAAAGCGTTCAGCGACCAAAGCGCCCGAGCTGTGCGCCTTGT
TCGCCGACCATAAAATGCTGAGTGGGTAGCGGCCTTTAACCAATCAATCT
GCTAGACAGACCTGTTGGGAAAAGTTTATTTACATTCACGAAAGTTTAGA
AATTGTAGAAACTCCTTCAAAGTTCGCTTCATTTTTCATAAAGCCAGTAA
ATTTGGCTGAAGCTGCGCCTGTTATTATTTTTCTGTGGTCTTCAGGCTTA
ATCAAATTAACTAATTATTCATTTAATTATTGGAATGAGGTCTTTATGAA
ATCTTAAGCTAGCGTCATTTATCTATTCTTAAGGCGTGGTTACATTACAT
TAGATGGTTTTTTTTATAAGCAACTGTCAGGCTCATGTATGCTTAAGTTT
TCAAAGCATCCAGGCATAGTTTATGCTTATTATATGCTTAAGAATCATGC
TTATGATTCACCCCGAGCCAAGTTTTTAATGCAATTTCAAAAATTTTGTA
AAATTTTGCTCAGATTTTGGGAGTGTGGAATTTTTACTTGAC

Coding sequence (CDS) from alignment at scaffold_307:90520..92811-

>TCONS_00058157 ID=TCONS_00058157|Name=TCONS_00058157|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_307:90520..92811- (Clytia hemisphaerica)
TTTTGATGGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTCGTCCCA
TCTATACCACAAGCATACTACCTTGTCTCATTTTCGTGGTTTGCACTGTT
ACTTATAAATTGGAGTTGCGTAAATTGTTGGAATCGTTGGGCAGGAATAA
GAATCGAAAAAGAATGGGGCACAGATGACAACGGTAATCCAAAATGTACC
AAGCGGTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAA
TTTACCAAAGGAGCCGAAAGTGATTGTTCAATGCGAGGCTGTGGAACCTC
GAACTTCGTGCTGCAGAAAACAAAGAGTTATTTGGAGCAATCAGAAAGAG
TTTGAATTTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAAATC
ACAAATTGAAGAAGCGATTTTCGGTGAATTGAAAATTGATTTCGAATTTG
GTGACGAAGAAACAAAAGAGTCATATGAACAACACGTTCAGAATCTTGTG
AAAGAAGCAAAGCAACATTCTCCAAACGATCAAGTCAATATCAAACAAAT
TTTCGAAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATG
GAAAGAAAATTCTTTTTGGAAAACCATTCGTGTGTCTTCAAGGTGTTTTT
CCTCAAATCGAACTTTCGTTCAAAATTTTAAAATGGCTTCTCGAAAAAAT
TGGTTGCAAAAGTTTATTAACCAAAGGAATTGTAAACAAAAAAGTAATAT
GTGATAGAAATATTGTAGCTGTATAGATGTTCTTATATTTGAGCCATCAA
AGTTCCATCATTTATATATTTTGTTCTTATAAAAAACGTCCATCACCTTT
AGAACAAAGCTTCAAGGTACAAAGAATTGGAAGTTTTGAGCTAAAGACCT
TATTTGGATATTGCCTTATTATCATTTTGATGGTAAGTGACATTGTATTT
GTGGTGATCTTTCTCTTCGTCCCATCTATACCACAAGCATACTACCTTGT
CTCATTTTCGTGGTTTGCACTGTTACTTATAAATTGGAGTTGCGTAAATT
GTTGGAATCGTTGGGCAGGAATAAGAATCGAAAAAGAATGGGGCACAGAT
GACAACGGTAATCCAAAATGTACCAAGCGGTATAGACACTCGATGAAAGA
AATCAAGGAAATTCTGGATGAAAATTTACCAAAGGAGCCGAAAGTGATTG
TTCAATGCGAGGCTGTGGAACCTCGAACTTCGTGCTGCAGAAAACAAAGA
GTTATTTGGAGCAATCAGAAAGAGTTTGAATTTCAACATTGGATCGATGT
GACTGAACAACATTTGGTGAAATCACAAATTGAAGAAGCGATTTTCGGTG
AATTGAAAATTGATTTCGAATTTGGTGACGAAGAAACAAAAGAGTCATAT
GAACAACACGTTCAGAATCTTGTGAAAGAAGCAAAGCAACATTCTCCAAA
CGATCAAGTCAATATCAAACAAATTTTCGAAGTCGGTGAAAAAGATATCA
AAACCTACAGACGGTCGTTTTATGGAAAGAAAATTCTTTTTGGAAAACCA
TTCGTGTGTCTTCAAGGTGTTTTTCCTCAAATCGAACTTTCGTTCAAAAT
TTTAAAATGGCTTCTCGAAAAAATTGGTTGCAAAAGTTTATTAACCAAAG
GAATTGTAAACAAAAAAGTAATATGTGATAGAAATATTGTAGCTGTATAG
ATGTTCTTATATTTGAGCCATCAAAGTTCCATCATTTATATATTTTGTTC
TTATAAAAAACGTCCATCACCTTTAGAACAAAGCTTCAAGGTACAAAGAA
TTGGAAGTTTTGAGCTAAAGACCTTATTTGGATATTGCCTTATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036644XLOC_036644Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058157-proteinTCONS_00058157-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058157-exon-scaffold_307-1575043694:92621..92811TCONS_00058157-exon-scaffold_307-1575043694:92621..92811Clytia hemisphaericaexon
TCONS_00058157-exon-scaffold_307-1575043694:90520..92232TCONS_00058157-exon-scaffold_307-1575043694:90520..92232Clytia hemisphaericaexon
TCONS_00058157-exon-scaffold_307-1510915933:92621..92811TCONS_00058157-exon-scaffold_307-1510915933:92621..92811Clytia hemisphaericaexon
TCONS_00058157-exon-scaffold_307-1510915933:90520..92232TCONS_00058157-exon-scaffold_307-1510915933:90520..92232Clytia hemisphaericaexon
TCONS_00058157-exon-scaffold_307-1491911889:92621..92811TCONS_00058157-exon-scaffold_307-1491911889:92621..92811Clytia hemisphaericaexon
TCONS_00058157-exon-scaffold_307-1491911889:90520..92232TCONS_00058157-exon-scaffold_307-1491911889:90520..92232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:90520..92811 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.382702	0.302777	0.815223	0.969105	0.378961	0.0998874	0.120773	0.267772	0.167107	0.303268	0.277786	0.172395	0	0	0.201457	0.225943	0.23181	0.198609	0.308971	0.123603	0.230795	0.247016	0.570954	0.822769	0.207128	0.304643	0.279312	0.411964	0.0300129	0.132463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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