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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058161 ID=TCONS_00058161|Name=TCONS_00058161|organism=Clytia hemisphaerica|type=transcript|length=2057bpRun BLAST on NCBI protein sequence of TCONS_00058161-protein >TCONS_00058161-protein ID=TCONS_00058161-protein|Name=TCONS_00058161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp MIRSSVISRKSKRSQKTRKPMEDVLSQYADLIQLNENEVYRLENKCEDLVRun BLAST on NCBI transcript from alignment at scaffold_307:157327..164092- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058161 ID=TCONS_00058161|Name=TCONS_00058161|organism=Clytia hemisphaerica|type=transcript|length=6766bp|location=Sequence derived from alignment at scaffold_307:157327..164092- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_307:157327..164092- >TCONS_00058161 ID=TCONS_00058161|Name=TCONS_00058161|organism=Clytia hemisphaerica|type=CDS|length=16551bp|location=Sequence derived from alignment at scaffold_307:157327..164092- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058161 vs. Swiss-Prot (Human)
Match: PKHG5 (Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens GN=PLEKHG5 PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 2.772e-38 Identity = 102/363 (28.10%), Postives = 192/363 (52.89%), Query Frame = 3
Query: 225 NEVYRLENKCEDLVD-FSKLDEKCRRQQYPIFEFIKTEKKFIQKIHAICKLFCQIFKCLKNDGYLANFQFEDVFANIEDVFRVNDRIWATSIYTMLEKTRHTKAPIKPSEIFQSFIYMDDQFQPYLKYSMKFEGCVEKIRQVTKNPKQADEEFTTYLQFCDRKVSKLSICEGMKIRDLMSDPLSRMMKYPDLLQRVRKYTQEEDEIRFLDLIISKIKGFLRNMNTEKRRRQENVELQSFVLQELDDQDVWFAGTEEIFWSAKEFLR----APMKVRTRNHKNTVKEEQQRCLLKRGPMRISLENRRKLDVEAILFSDVLIIARNRRTNKKLTLVKQLYFLDKVLLKLSEVSSNG-VLLIYKNE 1295
N RLE+ +L+D KL + QQ ++E + TE +I+K+ I LF L+ G L + E +F+NI ++ +++ R+WA+ + +LEK R T+A ++P + + F F+PY++Y M+ EGC+E +R + ++ ++ F Y+ + ++ C+ +K+ D+++ P R+ KYP LL+ V + T+E + +I ++ F+ ++N R+RQE L + V+ +D +V + ++E+ KEFL AP+ E+ R LL G +R+ K+DV LF+D+L++ + + ++ +++ +DK++ + E+ G LLIY NE
Sbjct: 367 NACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLCCLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRD----NDLFRAYITWAEKHPQ----CQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVNACMRQRQERQRLAA-VVSRIDAYEVVESSSDEVDKLLKEFLHLDLTAPIP--------GASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCR--ELRDPGSFLLIYLNE 710 The following BLAST results are available for this feature:
BLAST of TCONS_00058161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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