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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058166 ID=TCONS_00058166|Name=TCONS_00058166|organism=Clytia hemisphaerica|type=transcript|length=1664bp
GTTTTGGTTTCAAAGATGGAGAGCTAACTTGTCTTCTATTGCAATATGGA
GCGCTTTCGTTTTCTTCCAAACATCAGAAAAATCTTCTTAAATCGAGCTT
ATCATTTATCAAATCGGTACATAGTTTATTTGAAACTGAGGATAAAATCA
GAAAGGAGAACGATCTCATCAAGACACGGATCGAGTCAATATCAGTTGTT
TTACAAAGCTGCGATCAAATCATTATGAATGTTCTTTCGAAGGATAAAGG
GCAATACCTCGAGGCACCAAGACTCACTGAAGTTACCGAAGATGAAAAAC
TTACATCGAACGTTGAAAGTTTATCGACAAAGATTACAACTGATTCTACA
GCTATCACATCGTCACTAGTTAATTCAAATTCTTCAAGTATTACCCATGA
ATCATCAGCAGATACCCTTAATTCAACACGGGAGATGTATTCAGATTCCA
AGGATTACTTAACACTACTCAAACTATTGGTCAATCTTGCTTGTATCATG
ATCAAGAGAGGAGAAAATATAAATTACTGTTTTGCCAGCATTTTACCAAA
GCTGTTTTATCGGTCGGACTTTCCAGTCATACCAGCTCATCTCCCATTAA
AATATTTCCCGAGATCGGTAACTAGAAGCACGACGTTACCTTGGAAAGTA
CCAAAACACATGCTGGCTTTAGATACGTTACGACTATGCGTATTGTGTTA
TGATCGCCAACTCGGTGGTTCGAATATGGTTTTTCANGATCACCTTGTAA
CATACCTGAGTTTGATTTCTTCGGATTTAAGGTATTGTGAAGTTCAACAG
CTTGAGATATAGTCTCGATTTGGCTTGCAATTTCATCAAATCTTCCATCG
ATTTCGTCTTTAGTGTGAGCAATATCATTGTTGATGTCGGTGATACTTTG
ATCTTGGCTTTCTATGTTGGTCTCTATTTCTGTGACCTTAGTGgaaatat
catttttaatgcTGGAAACTTCGTTCTGTACATCCTTAACATCGCTTTGA
AGGGTTTGAATCCCTTTAGAAAGAgctttttggtttgattttaatttttc
taagcACGATTTCAATGCTTTAAGAACAAGATGGTGCTTTGGGTCCAGAG
GCATAGTTTCCAGAAATTTTGTGTTGTATTGGTAATGAAGACCATTGACG
ATGTCACATCCTTCCTGCCATTTCTGTTGGAAAAGTAAAAGGTCGATTAT
CTTTGCATCGATATGATTGATGAAATTTCTCCATTCACGAGCTCTTATGA
CGAAAGCAGCTAAAGATGTATCTGTTAGGGAAGGATTTTTGGTTTTCCAG
CCTTTCTTTGGTTGTAGGGTAGTGAAGTATTGTATGAGTAAAGTTATGAG
CGTAACATCAAATTCTGATGAGAATGTTTGATTTCCTCCTTGCGGTAGAA
GTAGATCAAGCTGCtcttttttaagcaatttcTTCTTGACAAGTTGATTC
AAAGTGTTTTTGTTGTTCAAAAAGAATTGATACAATGCAACAGGGTTGTC
AGGGATTCCTTGGTAAGATGGATCCTTCAACTTGTTGTGAAGCACTTGAA
GTAAAGCATTCTTTATAGGATCATGTAGGAAGCATGTCAACCGAAGCCAA
TGCTCGAATTCTTTGATAGCATTGGCCACAGAAACGTACGAAGACATTTT
TCACCTAACCCATT Run BLAST on NCBI transcript from alignment at scaffold_307:192480..194480- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058166 ID=TCONS_00058166|Name=TCONS_00058166|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at scaffold_307:192480..194480- (Clytia hemisphaerica)
GTTTTGGTTTCAAAGATGGAGAGCTAACTTGTCTTCTATTGCAATATGGA
GCGCTTTCGTTTTCTTCCAAACATCAGAAAAATCTTCTTAAATCGAGCTT
ATCATTTATCAAATCGGTACATAGTTTATTTGAAACTGAGGATAAAATCA
GGTAGGTATCAGTTCACATTTATAAAAATATTGTGTCTGAATAGATTCTA
GTCTCGTGGTTATTGAATCGTAGCTTCTACATGGAGAAAAAGGAACTTTA
CCTAAAGCAGCAGCAACAGGGATATCATCTTGCGTTTAAACAGTACGGCT
TCCACAAAAAAAGGGATATTTTTTTCTTACAAGTTACACAGAATTAAAGC
AATCAACTAATTCCAGATATGTGTTTTAATTAGAAAGAAGCGGCTGTTGG
AGAGAAATTACCCGATAGCATAGTTTCATTTTTCGAAAAGTAGAAAACGG
TTTAGATGCAAACTTAAAATTCTTTCATTCTATTTTAGAAAGGAGAACGA
TCTCATCAAGACACGGATCGAGTCAATATCAGTTGTTTTACAAAGCTGCG
ATCAAATCATTATGAATGTTCTTTCGAAGGATAAAGGGCAATACCTCGAG
GCACCAAGACTCACTGAAGTTACCGAAGATGAAAAACTTACATCGAACGT
TGAAAGTTTATCGACAAAGATTACAACTGATTCTACAGCTATCACATCGT
CACTAGTTAATTCAAATTCTTCAAGTATTACCCATGAATCATCAGCAGAT
ACCCTTAATTCAACACGGGAGATGTATTCAGATTCCAAGGATTACTTAAC
ACTACTCAAACTATTGGTCAATCTTGCTTGTATCATGATCAAGAGAGGAG
AAAATATAAATTACTGTTTTGCCAGCATTTTACCAAAGCTGTTTTATCGG
TCGGACTTTCCAGTCATACCAGCTCATCTCCCATTAAAATATTTCCCGAG
ATCGGTAACTAGAAGCACGACGTTACCTTGGAAAGTACCAAAACACATGC
TGGCTTTAGATACGTTACGACTATGCGTATTGTGTTATGATCGCCAACTC
GGTGGTTCGAATATGGTTTTTCANGATCACCTTGTAACATACCTGAGTTT
GATTTCTTCGGATTTAAGGTATTGTGAAGTTCAACAGCTTGAGATATAGT
CTCGATTTGGCTTGCAATTTCATCAAATCTTCCATCGATTTCGTCTTTAG
TGTGAGCAATATCATTGTTGATGTCGGTGATACTTTGATCTTGGCTTTCT
ATGTTGGTCTCTATTTCTGTGACCTTAGTGGAAATATCATTTTTAATGCT
GGAAACTTCGTTCTGTACATCCTTAACATCGCTTTGAAGGGTTTGAATCC
CTTTAGAAAGAGCTTTTTGGTTTGATTTTAATTTTTCTAAGCACGATTTC
AATGCTTTAAGAACAAGATGGTGCTTTGGGTCCAGAGGCATAGTTTCCAG
AAATTTTGTGTTGTATTGGTAATGAAGACCATTGACGATGTCACATCCTT
CCTGCCATTTCTGTTGGAAAAGTAAAAGGTCGATTATCTTTGCATCGATA
TGATTGATGAAATTTCTCCATTCACGAGCTCTTATGACGAAAGCAGCTAA
AGATGTATCTGTTAGGGAAGGATTTTTGGTTTTCCAGCCTTTCTTTGGTT
GTAGGGTAGTGAAGTATTGTATGAGTAAAGTTATGAGCGTAACATCAAAT
TCTGATGAGAATGTTTGATTTCCTCCTTGCGGTAGAAGTAGATCAAGCTG
CTCTTTTTTAAGCAATTTCTTCTTGACAAGTTGATTCAAAGTGTTTTTGT
TGTTCAAAAAGAATTGATACAATGCAACAGGGTTGTCAGGGATTCCTTGG
TAAGATGGATCCTTCAACTTGTTGTGAAGCACTTGAAGTAAAGCATTCTT
TATAGGATCATGTAGGAAGCATGTCAACCGAAGCCAATGCTCGAATTCTT
TGATAGCATTGGCCACAGAAACGTACGAAGACATTTTTCACCTAACCCAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058166-exon-scaffold_307-1575043694:194330..194480 | TCONS_00058166-exon-scaffold_307-1575043694:194330..194480 | Clytia hemisphaerica | exon |
| TCONS_00058166-exon-scaffold_307-1575043694:192480..193992 | TCONS_00058166-exon-scaffold_307-1575043694:192480..193992 | Clytia hemisphaerica | exon |
| TCONS_00058166-exon-scaffold_307-1510915933:194330..194480 | TCONS_00058166-exon-scaffold_307-1510915933:194330..194480 | Clytia hemisphaerica | exon |
| TCONS_00058166-exon-scaffold_307-1510915933:192480..193992 | TCONS_00058166-exon-scaffold_307-1510915933:192480..193992 | Clytia hemisphaerica | exon |
| TCONS_00058166-exon-scaffold_307-1491911889:194330..194480 | TCONS_00058166-exon-scaffold_307-1491911889:194330..194480 | Clytia hemisphaerica | exon |
| TCONS_00058166-exon-scaffold_307-1491911889:192480..193992 | TCONS_00058166-exon-scaffold_307-1491911889:192480..193992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:192480..194480 - |
Blast
The following BLAST results are available for this feature:
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