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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058170 ID=TCONS_00058170|Name=TCONS_00058170|organism=Clytia hemisphaerica|type=transcript|length=2023bp
agttgtcactaccccccggacaaaatatccaatatattctccaacccccc
atgtacaaaagAGCCCATTAAGGTTTCATTCCCAAAACTTTTGATTTCTT
ATCCTCTTACGAGCTATTTTGCTAATTATCATGGATAAGATAATTCAGAG
CAAAATGATGATCCTGGAAAGGCTCGTGGAATAAGAATAGAACAAGGAAG
ATCAATAATTTGTATAAACATCAAATTAAGGTTAAAGATGCAGCCCCCTG
GTATTGTAATGACACATTCTAAAAAAGTCGGAAATAGATTTTTGATTGAT
GGAATCTAGACTATACTTAAAAGTTTGGCCAAAGAGGTCGCTGAAAATAA
GTCAAAATTCCAGGGGTTCTAAAAAAGTCCTCGACAtccttatttctatt
tttttaaggAATGCTTCGCAACTTCATGCAAAGAACTCAAAAAGATTTGT
CCAGATTGCGAGTCAAGGATTTACACGTTGGACTTTGATGAACCGACGAA
GGTGTTTTGTGATATGGAGACTGACGGGGGAGGTTGGTTGGCTATAGGCA
AAATTGTCTTTGATGACGTGAGTCTCCAATCATACCTTGGCAATGAAGTA
ATCAATAAACCAGGCAAGATATCTCAGCTTCAAAACGTGCAAAGCGGTCA
ATTTTTATTGGAAACAACAGCTCTGTCAACTCTACAACAATACATCGGTT
TTACAGAATTCAGAATCAAATGCTTCAAACCTGGGCACGGTCGTACACTT
AGTGTGGTTTTATCTGGAATCCAAATAATGTCTTATTTGCTGGACCCTCT
GAATACAGTTTACACCGGCCATTGCGGTGCATCACGATTTTTACCTGACG
ATAGCTCAGTCATCGGTGCAACGAATTGTCAACACACAAAAACAGGATAC
GTGGGACATACTGAAATCTACTCATTACCGTTCTACATAGCTTACCATGA
CGTTTGGTTGTATCATTTTAGATGTGATGATTATTCCGGTACCTTAGGAA
CTTGGGAATTTTATCTTCGTTAAATTGAAGCACCACCATCAATGATGATA
CTTACAATCTTGTTATGAAACTCGTACAGAGGCAGGTTTCCTCAAATCTA
AAGCTTGACCTCAGAATGAATAAAAGGAATGCGTAGCCTGTTTCAATTTA
AAGTACATGGACATATACACAAGTTTGATAACACTGATATGTCTTTCCTT
CGTTTTTCGAGTAAAGACACACAGATAGCGTAACGTTCACTCAGCCTGTT
CGGTAAAATACACCCCTCTAAAACGCAAAGACGGGGTAACTCTTGAACGG
GACTTTTATTCACGACACTTATCCCAAAAACAATTATCCTAtatcaaaaa
caatttaaaacctTAGAAAACTGGTTTGAAACGACTACTATGCTGTGAGT
CCTGGTAAATTTCAGGAAATCGGAAGATTTGTAAGAAATGTAACAATGAA
ATCTCAGAATTATGCTGTGCTTTCTTGGTAATACGATTGACAATAACTAT
ATGTCATGTAGTTTAGGAAAAGTAAACTCAACATTATATGTCCATTAGAA
AAGTCTTCATGTTTTTCTTCTTGggttttcattttaatttcaaaaacatg
gaatttaagattttaaagccTTCGAATCATCCacttttaaatagtttttt
tcCAGCACAGTCCAATGAGGTACTATTGTTAATATTAATAATtctatttt
ctaaaatgtttggACTGCTAATTTCTTTGGAACAGACTTTTTAAATCTTC
GCTGAAAGAAATAAACATTACGAATATTATTTGTCTTTGTATTTGAATAT
GtaagcaaaaaaattatcttaaaaatttcattcttaTAAATAGCGTTGAC
ATTAATCAGATTATTATTATAAATGCCAGATCAACATATATTAATAACTG
TATACCCTTAGGTTCCCGATAAACGGTTCCCTCGCTTGTTAAATTATCca
ccggaccttattaggacctcaccatttattaatttttgaagaatattttc
agcctTCAAAGAAAAGGTGCTTT Run BLAST on NCBI transcript from alignment at scaffold_307:282276..284816- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058170 ID=TCONS_00058170|Name=TCONS_00058170|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at scaffold_307:282276..284816- (Clytia hemisphaerica)
AGTTGTCACTACCCCCCGGACAAAATATCCAATATATTCTCCAACCCCCC
ATGTACAAAAGAGCCCATTAAGGTTTCATTCCCAAAACTTTTGATTTCTT
ATCCTCTTACGAGCTATTTTGCTAATTATCATGGATAAGATAATTCAGAG
CAAAATGATGATCCTGGAAAGGCTCGTGGAATAAGAATAGAACAAGGAAG
ATCAATAATTTGTATAAACATCAAATTAAGGTTAAAGATGCAGCCCCCTG
GTATTGTAATGACACATTCTAAAAAAGTCGGAAATAGATTTTTGATTGAT
GGAATCTAGACTATACTTAAAAGTTTGGCCAAAGAGGTCGCTGAAAATAA
GTCAAAATTCCAGGGGTTCTAAAAAAGTCCTCGACATCCTTATTTCTATT
TTTTTAAGGAATGCTTCGCAACTTCATGCAAAGAACTCAAAAAGATTTGT
CCAGATTGCGAGTCAAGGATTTACACGTTGGACTTTGATGAACCGACGAA
GGTGTTTTGTGATATGGAGACTGACGGGGGTAAGAATAAAAAACTAAAAT
ACTACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCAAAAACAAACT
TGTAAAAAAATTGAAACAATCGAAATCCGCCATGGGATGCCATATTTGTT
TTTATTTTTTATATATTTTGATTTTGTATCCCGCTGCATACGGTTTGTTT
ACAAATTTCGTCAGTACTTTTGTGTCCCTTTAAGGGGATGCACAGTTATT
ATTTATTTAAAAAAAGTTTCACACGAGATGCTTAAAATACACATAAATAC
ATTCATTTCCACTTGATACATATCAAAAATCATGTCAGTATTAATTTTTG
AGTTCCTTATAACATCATACACTTTTGTAGTCAGTTTCACCCATTTGTTA
AGCCTTAAAACACTTTTTCAGTCCCCCCTTAAAATGAAATTTTGCGCTTG
AAGAAANGTCAGAAACCATGTTCAATGTTAAATCTCACCAAAATTAATAC
CTTTAAAATAGCAATCAATCATTTTTTGACCGAATTCTTGCCCACAGGAG
GTTGGTTGGCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAATCA
TACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCA
AAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTC
TACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCT
GGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTC
TTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCAT
CACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAA
CACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTT
CTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATT
ATTCCGGTACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATTGAAGCA
CCACCATCAATGATGATACTTACAATCTTGTTATGAAACTCGTACAGAGG
CAGGTTTCCTCAAATCTAAAGCTTGACCTCAGAATGAATAAAAGGAATGC
GTAGCCTGTTTCAATTTAAAGTACATGGACATATACACAAGTTTGATAAC
ACTGATATGTCTTTCCTTCGTTTTTCGAGTAAAGACACACAGATAGCGTA
ACGTTCACTCAGCCTGTTCGGTAAAATACACCCCTCTAAAACGCAAAGAC
GGGGTAACTCTTGAACGGGACTTTTATTCACGACACTTATCCCAAAAACA
ATTATCCTATATCAAAAACAATTTAAAACCTTAGAAAACTGGTTTGAAAC
GACTACTATGCTGTGAGTCCTGGTAAATTTCAGGAAATCGGAAGATTTGT
AAGAAATGTAACAATGAAATCTCAGAATTATGCTGTGCTTTCTTGGTAAT
ACGATTGACAATAACTATATGTCATGTAGTTTAGGAAAAGTAAACTCAAC
ATTATATGTCCATTAGAAAAGTCTTCATGTTTTTCTTCTTGGGTTTTCAT
TTTAATTTCAAAAACATGGAATTTAAGATTTTAAAGCCTTCGAATCATCC
ACTTTTAAATAGTTTTTTTCCAGCACAGTCCAATGAGGTACTATTGTTAA
TATTAATAATTCTATTTTCTAAAATGTTTGGACTGCTAATTTCTTTGGAA
CAGACTTTTTAAATCTTCGCTGAAAGAAATAAACATTACGAATATTATTT
GTCTTTGTATTTGAATATGTAAGCAAAAAAATTATCTTAAAAATTTCATT
CTTATAAATAGCGTTGACATTAATCAGATTATTATTATAAATGCCAGATC
AACATATATTAATAACTGTATACCCTTAGGTTCCCGATAAACGGTTCCCT
CGCTTGTTAAATTATCCACCGGACCTTATTAGGACCTCACCATTTATTAA
TTTTTGAAGAATATTTTCAGCCTTCAAAGAAAAGGTGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058170-exon-scaffold_307-1575043694:284288..284816 | TCONS_00058170-exon-scaffold_307-1575043694:284288..284816 | Clytia hemisphaerica | exon |
| TCONS_00058170-exon-scaffold_307-1575043694:282276..283769 | TCONS_00058170-exon-scaffold_307-1575043694:282276..283769 | Clytia hemisphaerica | exon |
| TCONS_00058170-exon-scaffold_307-1510915933:284288..284816 | TCONS_00058170-exon-scaffold_307-1510915933:284288..284816 | Clytia hemisphaerica | exon |
| TCONS_00058170-exon-scaffold_307-1510915933:282276..283769 | TCONS_00058170-exon-scaffold_307-1510915933:282276..283769 | Clytia hemisphaerica | exon |
| TCONS_00058170-exon-scaffold_307-1491911889:284288..284816 | TCONS_00058170-exon-scaffold_307-1491911889:284288..284816 | Clytia hemisphaerica | exon |
| TCONS_00058170-exon-scaffold_307-1491911889:282276..283769 | TCONS_00058170-exon-scaffold_307-1491911889:282276..283769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:282276..284816 - |
Blast
The following BLAST results are available for this feature:
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