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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058178 ID=TCONS_00058178|Name=TCONS_00058178|organism=Clytia hemisphaerica|type=transcript|length=807bp
CAATATTGGGGACATTCGCTTGGTTCATTGGTTCAATCATTCATCTAACT
CTCTGTCTGGTATATAATcgattcataaaaaatcaaagtctttCAACAGA
TTCGATTGAAAAGATTGTTATTGATAATTTACCTACAGAACCGAAAGTGA
TTACTCAATGCGAGGCTGTGGAGCCTCTAACTTCTTGCTGCAGAAAACAA
AGAGTTATTTGGAGCAATCAGAAAGAGTTCGAATTTCAACATTGGATCGA
TGTGACTGAACAGCATTTGGTGAAATCACAAATTGAAGAAGCGATtttta
ttgaattgaaaattgaattcgAATTTGATGACGAAGAAACCAAAGAATCA
TATGAACAACACGTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCCCC
AAACGCTCAAGTCAATATCAAACAAATTTTCCAAGTCGGTGAAAAAGATA
TCAAAACCTACAGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTGGAAGA
CCATGCGCGTGTCTTCAATGCATTTTCCCTCAAATCGAACTTTcgttcaa
aatattgaaaaggttTCTCGAAAAATTTGGTTTGAAAAGTTTATTGACCA
AGGAAATTGTAATCAGAAAAGTAATATCTGACAGAAATATTGTAGCTGTA
TAGCATTTGTGATAAATAATTTTATACCATTTTGAATAATATAACAGAGC
GGAAACTAACCACGCTAATGGCATGTCCCACGTTACTGGCTTCGTGTCTA
AAATATTAAGCTATTCAACTTAAAGTAAACCAATTAATCTGATAGACAGA
CCTGTTG Run BLAST on NCBI protein sequence of TCONS_00058178-protein >TCONS_00058178-protein ID=TCONS_00058178-protein|Name=TCONS_00058178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
ILGTFAWFIGSIIHLTLCLVYNRFIKNQSLSTDSIEKIVIDNLPTEPKVI
TQCEAVEPLTSCCRKQRVIWSNQKEFEFQHWIDVTEQHLVKSQIEEAIFI
ELKIEFEFDDEETKESYEQHVQNLVKEAKQHSPNAQVNIKQIFQVGEKDI
KTYRRSFYGKKALFGRPCACLQCIFPQIELSFKILKRFLEKFGLKSLLTK
EIVIRKVISDRNIVAV Run BLAST on NCBI transcript from alignment at scaffold_307:96915..97721 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058178 ID=TCONS_00058178|Name=TCONS_00058178|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at scaffold_307:96915..97721 (Clytia hemisphaerica)
CAACAGGTCTGTCTATCAGATTAATTGGTTTACTTTAAGTTGAATAGCTT
AATATTTTAGACACGAAGCCAGTAACGTGGGACATGCCATTAGCGTGGTT
AGTTTCCGCTCTGTTATATTATTCAAAATGGTATAAAATTATTTATCACA
AATGCTATACAGCTACAATATTTCTGTCAGATATTACTTTTCTGATTACA
ATTTCCTTGGTCAATAAACTTTTCAAACCAAATTTTTCGAGAaacctttt
caatattttgaacgAAAGTTCGATTTGAGGGAAAATGCATTGAAGACACG
CGCATGGTCTTCCAAAAAGAGCCTTCTTTCCATAAAACGACCGTCTGTAG
GTTTTGATATCTTTTTCACCGACTTGGAAAATTTGTTTGATATTGACTTG
AGCGTTTGGGGAATGTTGCTTTGCTTCTTTTACAAGATTCTGAACGTGTT
GTTCATATGATTCTTTGGTTTCTTCGTCATCAAATTcgaattcaattttc
aattcaataaaaATCGCTTCTTCAATTTGTGATTTCACCAAATGCTGTTC
AGTCACATCGATCCAATGTTGAAATTCGAACTCTTTCTGATTGCTCCAAA
TAACTCTTTGTTTTCTGCAGCAAGAAGTTAGAGGCTCCACAGCCTCGCAT
TGAGTAATCACTTTCGGTTCTGTAGGTAAATTATCAATAACAATCTTTTC
AATCGAATCTGTTGaaagactttgattttttatgaatcgATTATATACCA
GACAGAGAGTTAGATGAATGATTGAACCAATGAACCAAGCGAATGTCCCC
AATATTG Coding sequence (CDS) from alignment at scaffold_307:96915..97721 >TCONS_00058178 ID=TCONS_00058178|Name=TCONS_00058178|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_307:96915..97721 (Clytia hemisphaerica)
CTATACAGCTACAATATTTCTGTCAGATATTACTTTTCTGATTACAATTT
CCTTGGTCAATAAACTTTTCAAACCAAATTTTTCGAGAaaccttttcaat
attttgaacgAAAGTTCGATTTGAGGGAAAATGCATTGAAGACACGCGCA
TGGTCTTCCAAAAAGAGCCTTCTTTCCATAAAACGACCGTCTGTAGGTTT
TGATATCTTTTTCACCGACTTGGAAAATTTGTTTGATATTGACTTGAGCG
TTTGGGGAATGTTGCTTTGCTTCTTTTACAAGATTCTGAACGTGTTGTTC
ATATGATTCTTTGGTTTCTTCGTCATCAAATTcgaattcaattttcaatt
caataaaaATCGCTTCTTCAATTTGTGATTTCACCAAATGCTGTTCAGTC
ACATCGATCCAATGTTGAAATTCGAACTCTTTCTGATTGCTCCAAATAAC
TCTTTGTTTTCTGCAGCAAGAAGTTAGAGGCTCCACAGCCTCGCATTGAG
TAATCACTTTCGGTTCTGTAGGTAAATTATCAATAACAATCTTTTCAATC
GAATCTGTTGaaagactttgattttttatgaatcgATTATATACCAGACA
GAGAGTTAGATGAATGATTGAACCAATGAACCAAGCGAATGTCCCCAATA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058178-exon-scaffold_307-1491911889:96915..97721 | TCONS_00058178-exon-scaffold_307-1491911889:96915..97721 | Clytia hemisphaerica | exon |
| TCONS_00058178-exon-scaffold_307-1510915933:96915..97721 | TCONS_00058178-exon-scaffold_307-1510915933:96915..97721 | Clytia hemisphaerica | exon |
| TCONS_00058178-exon-scaffold_307-1575043694:96915..97721 | TCONS_00058178-exon-scaffold_307-1575043694:96915..97721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:96915..97721 . |
Blast
The following BLAST results are available for this feature:
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