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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058183 ID=TCONS_00058183|Name=TCONS_00058183|organism=Clytia hemisphaerica|type=transcript|length=1096bp
attccgcggaatagctattccggccggaacagctattccggttccggcat
tccgGCATTCCGCCGTTCTGCGTTTTGTCTCCACCCACAGATATCCAATA
TAAAACACACGATGATGCTGGACTTTGCTGAAATAGGATTAAAAAAGCTG
AATCTAGTGTGCTAAATACAATATCTGTGAGCGCATCCCTTTTCCATTGT
CGCAGCTGAgggtaccattttgaattttaagataaaaagtAAGATGGGTG
CGATTGTGGGCACGCTGAAAATCCGAGCCGATTTCTTCCTGATTTATGGg
gatattttttccattctgtgagcaatttttctttgaagtgGGCGACAGAT
GTTGCAGTTACAACATCAGCTCCAAGACCATTCCATATGTCAATACTTCT
GTAGAACAACGAATTTGTTTGATACTCTCTGACACCATCATTTGCAAAGT
TTCTTTGTAGTTCGTAATCGTGCCGACGTTTTGGGCGTTCGCGAAGGACA
AACTTTTGACAGGTCGATGATTTATCATAAACGTGaagatgtttatatac
ttcaACCATATCGCCAATTTTAAGTCTGATTTTCAGTGTCGGAAGGTTAA
TCTTACGGAGACGGTATTCGTAAGATTTGTTCTTGTACCCGCTAACCAGT
CTCGTGGCCCTTCGCTGAACACTCTCGATGGCATCGATGTGTTCGATGAG
TCGTGGAGACCAAACGGCTTCAGCGTACTCAAGATGAGGTCAGACAAACG
CTATAAAAAGAGTGTGGAGTATTTCTAGTGaaagaaagtcaaaactttTG
CTGATCAGACCAACGATTGAGttagttttcttgattttaccaaaGATGTG
TTCTTCAAAATTCAGTTCCCCGACGATAATCACTCCgagatctttttctt
gatccACGTGCTCCAGGATTAACTCGTCTATGTTGTATTGATGGGTAtgt
ttgatgttccaaaattttcccagtGTTAGCACGTGGCATTTATCTGGGTG
GAATCAGAGTAGCCAGTCCTTTGACCATCTTTCCATATTCAGCACTAATT
ATCTCCTCAACAAGCTTAGTGTCGTCTGCAAAGAGGTACATATCAG Run BLAST on NCBI protein sequence of TCONS_00058183-protein >TCONS_00058183-protein ID=TCONS_00058183-protein|Name=TCONS_00058183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MVEVYKHLHVYDKSSTCQKFVLRERPKRRHDYELQRNFANDGVREYQTNS
LFYRSIDIWNGLGADVVTATSVAHFKEKLLTEWKKYPHKSGRNRLGFSAC
PQSHPSYFLS Run BLAST on NCBI transcript from alignment at scaffold_307:361610..362705 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058183 ID=TCONS_00058183|Name=TCONS_00058183|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_307:361610..362705 (Clytia hemisphaerica)
CTGATATGTACCTCTTTGCAGACGACACTAAGCTTGTTGAGGAGATAATT
AGTGCTGAATATGGAAAGATGGTCAAAGGACTGGCTACTCTGATTCCACC
CAGATAAATGCCACGTGCTAACactgggaaaattttggaacatcaaacaT
ACCCATCAATACAACATAGACGAGTTAATCCTGGAGCACGTggatcaaga
aaaagatctcGGAGTGATTATCGTCGGGGAACTGAATTTTGAAGAACACA
TCtttggtaaaatcaagaaaactaaCTCAATCGTTGGTCTGATCAGCAaa
agttttgactttctttCACTAGAAATACTCCACACTCTTTTTATAGCGTT
TGTCTGACCTCATCTTGAGTACGCTGAAGCCGTTTGGTCTCCACGACTCA
TCGAACACATCGATGCCATCGAGAGTGTTCAGCGAAGGGCCACGAGACTG
GTTAGCGGGTACAAGAACAAATCTTACGAATACCGTCTCCGTAAGATTAA
CCTTCCGACACTGAAAATCAGACTTAAAATTGGCGATATGGTtgaagtat
ataaacatcttCACGTTTATGATAAATCATCGACCTGTCAAAAGTTTGTC
CTTCGCGAACGCCCAAAACGTCGGCACGATTACGAACTACAAAGAAACTT
TGCAAATGATGGTGTCAGAGAGTATCAAACAAATTCGTTGTTCTACAGAA
GTATTGACATATGGAATGGTCTTGGAGCTGATGTTGTAACTGCAACATCT
GTCGCCcacttcaaagaaaaattgctcacagaatggaaaaaatatccCCA
TAAATCAGGAAGAAATCGGCTCGGATTTTCAGCGTGCCCACAATCGCACC
CATCTTactttttatcttaaaattcaaaatggtacccTCAGCTGCGACAA
TGGAAAAGGGATGCGCTCACAGATATTGTATTTAGCACACTAGATTCAGC
TTTTTTAATCCTATTTCAGCAAAGTCCAGCATCATCGTGTGTTTTATATT
GGATATCTGTGGGTGGAGACAAAACGCAGAACGGCGGAATGCcggaatgc
cggaaccggaatagctgttccggccggaatagctattccgcggaat Coding sequence (CDS) from alignment at scaffold_307:361610..362705 >TCONS_00058183 ID=TCONS_00058183|Name=TCONS_00058183|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_307:361610..362705 (Clytia hemisphaerica)
ATGGTtgaagtatataaacatcttCACGTTTATGATAAATCATCGACCTG
TCAAAAGTTTGTCCTTCGCGAACGCCCAAAACGTCGGCACGATTACGAAC
TACAAAGAAACTTTGCAAATGATGGTGTCAGAGAGTATCAAACAAATTCG
TTGTTCTACAGAAGTATTGACATATGGAATGGTCTTGGAGCTGATGTTGT
AACTGCAACATCTGTCGCCcacttcaaagaaaaattgctcacagaatgga
aaaaatatccCCATAAATCAGGAAGAAATCGGCTCGGATTTTCAGCGTGC
CCACAATCGCACCCATCTTactttttatcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058183-exon-scaffold_307-1491911889:361610..362705 | TCONS_00058183-exon-scaffold_307-1491911889:361610..362705 | Clytia hemisphaerica | exon |
| TCONS_00058183-exon-scaffold_307-1510915933:361610..362705 | TCONS_00058183-exon-scaffold_307-1510915933:361610..362705 | Clytia hemisphaerica | exon |
| TCONS_00058183-exon-scaffold_307-1575043694:361610..362705 | TCONS_00058183-exon-scaffold_307-1575043694:361610..362705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:361610..362705 . |
Blast
The following BLAST results are available for this feature:
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