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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058186 ID=TCONS_00058186|Name=TCONS_00058186|organism=Clytia hemisphaerica|type=transcript|length=1156bp
CCATGCCGCACAACAAGAACTTAGAGACCTTGAGAACCAACTGAGAGAGG
TAAACAACATACTAAGAGAAATAGACTCTGATTATGAAGCTGATGAAAAC
GAAGATGCTGAGAGTGAAGATAGCTCTGAAGGAGAAGAAGAATCTGAAGA
TAATGACTCACTGGTAAATTATCATTCTCTAGAAGTCGCTCCTACAACAT
ACCACTATTGCAAACCTCGTGACTGTTGGTCAAGGCCGGTCATCTCGCCT
TTGTGCTTTACACGTGTTCGAGACGAAGACTGTCCAATGATACAACACCT
CAGGAAACCTCCAACCATCTATACAGCACCTGTCGATGACAGTACCATGA
TCGCATGCGCATGCTCACTAATATTTGTCGTTAGCTATTTTATCGGAATG
GCCTTTTATGCAAATTATGACAAAATTTACCAAAACATATACAATTATTA
CCATCCACGACCGAAACCCTCACCTATCAATATTTTCTATCTAATCTTCA
AATTCCTATTGCAATGCTTCACCAATATGTACAACTACATGATGGCTTTA
CCAGTTAAAAAACCGGAAAATATCAGACCATCCAATATTGATGTGAACTT
TCACTTGCGGAATTTATTGATATTCTTTGCCGTATACTTCCCATATACAT
ACATAGTTACGCCACAACGAAGAATCGAACCACCGGAAGATGAGCAAAAC
GAGAAAAAATACATCGTCAAACTACCGGACAACCGTGTCCGAAATTTGGC
ACTTGTATTTGGAGTCATCATTAGTGTCTCACTTGTTGTTTTCATGGTTA
TAACGATTTATAACTCACCCTTCTTAAGGGCATTGACGAAAGTTCTgttc
ttttatctttttttcattGCATATGTGATCTCTGGTATTATCTTAGTCTT
GAGACTTTTGTATTTAACTTCGCCTCGTTTTCGCCAAATGTGGCAAAGAA
GAAATAGATCTTAATGCAAGTAATGCTTCACCATAAAACAAATATTTCCA
TATTCTTCAATTACCCTTGTCTTTAAAAAAGCTAGTATGAAATCTTAAAC
CGCAAATTGATTGATAAACCCAAGGCCAACTTGAAATGACCTATATTGTA
ATCAACCAAGGTCcgaagttaagaaaatttgatttctcaGATTTTTATTA
ATGTCA Run BLAST on NCBI protein sequence of TCONS_00058186-protein >TCONS_00058186-protein ID=TCONS_00058186-protein|Name=TCONS_00058186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
HAAQQELRDLENQLREVNNILREIDSDYEADENEDAESEDSSEGEEESED
NDSLVNYHSLEVAPTTYHYCKPRDCWSRPVISPLCFTRVRDEDCPMIQHL
RKPPTIYTAPVDDSTMIACACSLIFVVSYFIGMAFYANYDKIYQNIYNYY
HPRPKPSPINIFYLIFKFLLQCFTNMYNYMMALPVKKPENIRPSNIDVNF
HLRNLLIFFAVYFPYTYIVTPQRRIEPPEDEQNEKKYIVKLPDNRVRNLA
LVFGVIISVSLVVFMVITIYNSPFLRALTKVLFFYLFFIAYVISGIILVL
RLLYLTSPRFRQMWQRRNRS Run BLAST on NCBI transcript from alignment at scaffold_308:40548..43008+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058186 ID=TCONS_00058186|Name=TCONS_00058186|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at scaffold_308:40548..43008+ (Clytia hemisphaerica)
CCATGCCGCACAACAAGAACTTAGAGACCTTGAGAACCAACTGAGAGAGG
TAAACAACATACTAAGAGAAATAGACTCTGATTATGAAGCTGATGAAAAC
GAAGATGCTGAGAGTGAAGATAGCTCTGAAGGAGAAGAAGAATCTGAAGA
TAATGACTCACTGGTAAATTATCATTCTCTAGAAGTCGCTCCTACAACAT
ACCACTATTGCAAACCTCGTGACTGTTGGTCAAGGCCGGTCATCTCGCCT
TTGTGCTTTACACGTGTTCGAGACGAAGACTGTCCAATGATACAACACCT
CAGGTAAGGGTGCAAAAGTATTTCAGATCTtagaaaaatttgctttggaA
AGACTCAAAAGTCTCTTGGAAAATGCAGATAAATTCCTTAAAGACTCCCT
GAAATTTCGTCTTGGAGGAAGCCCCGTGTACGAATCAAAATCGAAATAGC
CTATTCTATTTCTCTTCCTTAGGAAACCTCCAACCATCTATACAGCACCT
GTCGATGACAGTACCATGATCGCATGCGCATGCTCACTAATATTTGTCGT
TAGCTATTTTATCGGAATGGCCTTTTATGCAAATTATGACAAAATTTACC
AAAACATATACAATTATTAGTAAGTACATATCAATAGTAGAATATTGTGG
AAAACTGTAATCTTATGAGCAATAAAATACTTTTGCCAAAAGAGCAATAA
TGGTCATTTTTAACTAAAACACCCCACTGATTAACTAGTTTTAACAGGAC
GTATGTTCTTGATCATTTATATGTGGGCACGCTTCTCCAGAAACTTTAGT
TTTGCAAGTAAAAAGTCTCGCCACCATAACTCTATTaatacaacttgaaa
ttttttgtatACCGATTATATCGTTCTTCATCTGAAAATCTAAGCTTTAC
TAAGCTGATTGGACAATACTTTGATCATTAGTCAGTTTTTGAAAGAGAAA
GTTGAATCAGCAAAAGGTAGAGAGTCTGTCatcataacttttaattttct
ttacagCCATCCACGACCGAAACCCTCACCTATCAATATTTTCTATCTAA
TCTTCAAATTCCTATTGCAATGCTTCACCAATATGTACAACTACATGATG
GCTTTACCAGTTAAAAAACCGGAAAATATCAGACCATCCAATATTGATGT
GAACTTTCACTTGCGGAATTTATTGATATTCTTTGCCGTATACTTCCCAT
ATACATACATAGTTACGCCACAACGAAGGTAAAAGACTTGCCTTTACTAG
ATAGACATCACCCGCGTTTTTCTACGCAAATAACGTCTATTTCACTTTGC
GACTTTTCCGAATGTTTTGAACCCCcgtttgagcccaggttttcgggctc
caagCATTCGAtcttttgacgtcactttaagcTTTCGAAGCTCTTCcagt
agcaaaaaaaaatgaatttgcgCCAATACACTTGAAAGActtctattttt
tgaaattaggaGTCGGAGAAACGGAATGAAAATTCCCCGTTTAAGGTGCC
ACAAGGCACTTTTCTCCATTCTGCAAAATTACCCCTGACCCATCTAATTG
CCAGCATCAAGAAGAGAAGCATCAAGTACTATATTGGGTATCTTTAATAT
GATCAgggtggggttcgaacccacaaTCTTGCACACCGTAGCCGGGTGCT
CTAACTTCATACTACGGTTGAATATAGAGTGATTTTCTAGTGGGGTAACT
CCAATAACTGGGTTTTCAGGGTGCACAACATTGTTTCGATATTCATAAGA
TGGACGTTGATTCGGCTTTAATTTATGACCAGCGTAACGGCAAAAAGATT
CTAAAACCGATCAAAAAGGCTTTGCGAGTACAGGAATACCGGAAACTCGG
CTTTTAAATACCGGAAAACTGGTTGATACCGGATTCTCAGAACCCTAACT
TATgcatttttatattatttctCTTCTCCCAATCGTATGTGTATTAtaat
aatgaaaactttttttcctgttTCTAGAATCGAACCACCGGAAGATGAGC
AAAACGAGAAAAAATACATCGTCAAACTACCGGACAACCGTGTCCGAAAT
TTGGCACTTGTATTTGGAGTCATCATTAGTGTCTCACTTGTTGTTTTCAT
GGTTATAACGATTTATAACTCACCCTTCTTAAGGGCATTGACGAAAGTTC
TgttcttttatctttttttcattGCATATGTGATCTCTGGTATTATCTTA
GTCTTGAGACTTTTGTATTTAACTTCGCCTCGTTTTCGCCAAATGTGGCA
AAGAAGAAATAGATCTTAATGCAAGTAATGCTTCACCATAAAACAAATAT
TTCCATATTCTTCAATTACCCTTGTCTTTAAAAAAGCTAGTATGAAATCT
TAAACCGCAAATTGATTGATAAACCCAAGGCCAACTTGAAATGACCTATA
TTGTAATCAACCAAGGTCcgaagttaagaaaatttgatttctcaGATTTT
TATTAATGTCA Coding sequence (CDS) from alignment at scaffold_308:40548..43008+ >TCONS_00058186 ID=TCONS_00058186|Name=TCONS_00058186|organism=Clytia hemisphaerica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_308:40548..43008+ (Clytia hemisphaerica)
CATGCCGCACAACAAGAACTTAGAGACCTTGAGAACCAACTGAGAGAGGT
AAACAACATACTAAGAGAAATAGACTCTGATTATGAAGCTGATGAAAACG
AAGATGCTGAGAGTGAAGATAGCTCTGAAGGAGAAGAAGAATCTGAAGAT
AATGACTCACTGGTAAATTATCATTCTCTAGAAGTCGCTCCTACAACATA
CCACTATTGCAAACCTCGTGACTGTTGGTCAAGGCCGGTCATCTCGCCTT
TGTGCTTTACACGTGTTCGAGACGAAGACTGTCCAATGATACAACACCTC
AGGAAACCTCCAACCATCTATACAGCACCTGTCGATGACAGTACCATGAT
CGCATGCGCATGCTCACTAATATTTGTCGTTAGCTATTTTATCGGAATGG
CCTTTTATGCAAATTATGACAAAATTTACCAAAACATATACAATTATTAC
CATCCACGACCGAAACCCTCACCTATCAATATTTTCTATCTAATCTTCAA
ATTCCTATTGCAATGCTTCACCAATATGTACAACTACATGATGGCTTTAC
CAGTTAAAAAACCGGAAAATATCAGACCATCCAATATTGATGTGAACTTT
CACTTGCGGAATTTATTGATATTCTTTGCCGTATACTTCCCATATACATA
CATAGTTACGCCACAACGAAGAATCGAACCACCGGAAGATGAGCAAAACG
AGAAAAAATACATCGTCAAACTACCGGACAACCGTGTCCGAAATTTGGCA
CTTGTATTTGGAGTCATCATTAGTGTCTCACTTGTTGTTTTCATGGTTAT
AACGATTTATAACTCACCCTTCTTAAGGGCATTGACGAAAGTTCTgttct
tttatctttttttcattGCATATGTGATCTCTGGTATTATCTTAGTCTTG
AGACTTTTGTATTTAACTTCGCCTCGTTTTCGCCAAATGTGGCAAAGAAG
AAATAGATCTTAACATGCCGCACAACAAGAACTTAGAGACCTTGAGAACC
AACTGAGAGAGGTAAACAACATACTAAGAGAAATAGACTCTGATTATGAA
GCTGATGAAAACGAAGATGCTGAGAGTGAAGATAGCTCTGAAGGAGAAGA
AGAATCTGAAGATAATGACTCACTGGTAAATTATCATTCTCTAGAAGTCG
CTCCTACAACATACCACTATTGCAAACCTCGTGACTGTTGGTCAAGGCCG
GTCATCTCGCCTTTGTGCTTTACACGTGTTCGAGACGAAGACTGTCCAAT
GATACAACACCTCAGGAAACCTCCAACCATCTATACAGCACCTGTCGATG
ACAGTACCATGATCGCATGCGCATGCTCACTAATATTTGTCGTTAGCTAT
TTTATCGGAATGGCCTTTTATGCAAATTATGACAAAATTTACCAAAACAT
ATACAATTATTACCATCCACGACCGAAACCCTCACCTATCAATATTTTCT
ATCTAATCTTCAAATTCCTATTGCAATGCTTCACCAATATGTACAACTAC
ATGATGGCTTTACCAGTTAAAAAACCGGAAAATATCAGACCATCCAATAT
TGATGTGAACTTTCACTTGCGGAATTTATTGATATTCTTTGCCGTATACT
TCCCATATACATACATAGTTACGCCACAACGAAGAATCGAACCACCGGAA
GATGAGCAAAACGAGAAAAAATACATCGTCAAACTACCGGACAACCGTGT
CCGAAATTTGGCACTTGTATTTGGAGTCATCATTAGTGTCTCACTTGTTG
TTTTCATGGTTATAACGATTTATAACTCACCCTTCTTAAGGGCATTGACG
AAAGTTCTgttcttttatctttttttcattGCATATGTGATCTCTGGTAT
TATCTTAGTCTTGAGACTTTTGTATTTAACTTCGCCTCGTTTTCGCCAAA
TGTGGCAAAGAAGAAATAGATCTTAACATGCCGCACAACAAGAACTTAGA
GACCTTGAGAACCAACTGAGAGAGGTAAACAACATACTAAGAGAAATAGA
CTCTGATTATGAAGCTGATGAAAACGAAGATGCTGAGAGTGAAGATAGCT
CTGAAGGAGAAGAAGAATCTGAAGATAATGACTCACTGGTAAATTATCAT
TCTCTAGAAGTCGCTCCTACAACATACCACTATTGCAAACCTCGTGACTG
TTGGTCAAGGCCGGTCATCTCGCCTTTGTGCTTTACACGTGTTCGAGACG
AAGACTGTCCAATGATACAACACCTCAGGAAACCTCCAACCATCTATACA
GCACCTGTCGATGACAGTACCATGATCGCATGCGCATGCTCACTAATATT
TGTCGTTAGCTATTTTATCGGAATGGCCTTTTATGCAAATTATGACAAAA
TTTACCAAAACATATACAATTATTACCATCCACGACCGAAACCCTCACCT
ATCAATATTTTCTATCTAATCTTCAAATTCCTATTGCAATGCTTCACCAA
TATGTACAACTACATGATGGCTTTACCAGTTAAAAAACCGGAAAATATCA
GACCATCCAATATTGATGTGAACTTTCACTTGCGGAATTTATTGATATTC
TTTGCCGTATACTTCCCATATACATACATAGTTACGCCACAACGAAGAAT
CGAACCACCGGAAGATGAGCAAAACGAGAAAAAATACATCGTCAAACTAC
CGGACAACCGTGTCCGAAATTTGGCACTTGTATTTGGAGTCATCATTAGT
GTCTCACTTGTTGTTTTCATGGTTATAACGATTTATAACTCACCCTTCTT
AAGGGCATTGACGAAAGTTCTgttcttttatctttttttcattGCATATG
TGATCTCTGGTATTATCTTAGTCTTGAGACTTTTGTATTTAACTTCGCCT
CGTTTTCGCCAAATGTGGCAAAGAAGAAATAGATCTTAACATGCCGCACA
ACAAGAACTTAGAGACCTTGAGAACCAACTGAGAGAGGTAAACAACATAC
TAAGAGAAATAGACTCTGATTATGAAGCTGATGAAAACGAAGATGCTGAG
AGTGAAGATAGCTCTGAAGGAGAAGAAGAATCTGAAGATAATGACTCACT
GGTAAATTATCATTCTCTAGAAGTCGCTCCTACAACATACCACTATTGCA
AACCTCGTGACTGTTGGTCAAGGCCGGTCATCTCGCCTTTGTGCTTTACA
CGTGTTCGAGACGAAGACTGTCCAATGATACAACACCTCAGGAAACCTCC
AACCATCTATACAGCACCTGTCGATGACAGTACCATGATCGCATGCGCAT
GCTCACTAATATTTGTCGTTAGCTATTTTATCGGAATGGCCTTTTATGCA
AATTATGACAAAATTTACCAAAACATATACAATTATTACCATCCACGACC
GAAACCCTCACCTATCAATATTTTCTATCTAATCTTCAAATTCCTATTGC
AATGCTTCACCAATATGTACAACTACATGATGGCTTTACCAGTTAAAAAA
CCGGAAAATATCAGACCATCCAATATTGATGTGAACTTTCACTTGCGGAA
TTTATTGATATTCTTTGCCGTATACTTCCCATATACATACATAGTTACGC
CACAACGAAGAATCGAACCACCGGAAGATGAGCAAAACGAGAAAAAATAC
ATCGTCAAACTACCGGACAACCGTGTCCGAAATTTGGCACTTGTATTTGG
AGTCATCATTAGTGTCTCACTTGTTGTTTTCATGGTTATAACGATTTATA
ACTCACCCTTCTTAAGGGCATTGACGAAAGTTCTgttcttttatcttttt
ttcattGCATATGTGATCTCTGGTATTATCTTAGTCTTGAGACTTTTGTA
TTTAACTTCGCCTCGTTTTCGCCAAATGTGGCAAAGAAGAAATAGATCTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058186-exon-scaffold_308-1491911889:40548..40850 | TCONS_00058186-exon-scaffold_308-1491911889:40548..40850 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1510915933:40548..40850 | TCONS_00058186-exon-scaffold_308-1510915933:40548..40850 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1575043694:40548..40850 | TCONS_00058186-exon-scaffold_308-1575043694:40548..40850 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1491911889:41020..41166 | TCONS_00058186-exon-scaffold_308-1491911889:41020..41166 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1510915933:41020..41166 | TCONS_00058186-exon-scaffold_308-1510915933:41020..41166 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1575043694:41020..41166 | TCONS_00058186-exon-scaffold_308-1575043694:41020..41166 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1491911889:41554..41775 | TCONS_00058186-exon-scaffold_308-1491911889:41554..41775 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1510915933:41554..41775 | TCONS_00058186-exon-scaffold_308-1510915933:41554..41775 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1575043694:41554..41775 | TCONS_00058186-exon-scaffold_308-1575043694:41554..41775 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1491911889:42525..43008 | TCONS_00058186-exon-scaffold_308-1491911889:42525..43008 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1510915933:42525..43008 | TCONS_00058186-exon-scaffold_308-1510915933:42525..43008 | Clytia hemisphaerica | exon |
| TCONS_00058186-exon-scaffold_308-1575043694:42525..43008 | TCONS_00058186-exon-scaffold_308-1575043694:42525..43008 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:40548..43008 + |
Blast
The following BLAST results are available for this feature:
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