|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058191 ID=TCONS_00058191|Name=TCONS_00058191|organism=Clytia hemisphaerica|type=transcript|length=1073bp
tttttttttgaataaaatatttgacgtcaattctaAATTCACAATCTTCA
AAACGGAAGATAATCGCAGATAAATTCTTTTTCTAGTAATTTTATACAAA
ATGGAGCAGAACTTAGTTTTGCCAAAGTCAGTCAATTTATTGGCCAGCGA
ATTAAACGTACAGAATGTGTCAAAAGATAGTATTCAAATTGAAAACGATA
TTGACGCTTCTTTTGTTGGTGAAAGAGATGCTAGTCCTACGCGTCTGATT
GGTCTATCTTTGCAACATGTGGATGTTCATTGTTATGGATGTTGGCGTAT
CTTATTTGTATGGAGATTTACGGATATATGTTCCCAATCGTAGAAGAGTC
GGTCAACACAACTATTTTTGAAGACTTGTATAACTTTGTGTTTGGAAAAG
TAAAACACATTCCGAAAATTGAAGTATGGAACGATATGTACAAGTTATGG
GGCGTAATTACATTGTACTTTTCTCGATGTTACATTGTTTCACCAAAACT
ATTTTATGCTCGTAGAATTCGAAACTCTTTGATTGTATTGGTTCATGTTT
GCATGGTGTCTGTTGCATTTTATTACTACAAGATAAACGGatTGACTTTT
CAATCGTTAATTTTGTCAAAACCGCCACCACCCCCGCCAACACCGAGTTT
GATGGAACAAATTACACCCATCATGCCCTACATTCTTATTCCTGTAGTTA
TCGTATTTACAGTTTATTGCGTCGCAATTTTTACAAGTACCGCGATATTA
ACAACATTCGCAACTTTCTTTGCTATTGGAGTCAATACCATTTTAGGATG
CCCTTCAACTAAAGAGGATAAGTAAGTAAACCcgtttttatattaaaaaa
aagtcatttttgacGACGATGCGACTTCTTCAGGCAACAAACTTGAAACT
GCCAACACTTTCCTTCATTGGAAGATCGAATGATAATAGTTAATGGATGC
AAGGTAGAAAAAGGCGGCTGTTTAAATTAGGGCTAAGCATAAGGAAGCTT
TATACCTAAACCTAcctctttttatcgttcttGTTGTCTACTTTTAGcaa
atgcaggattctttagattaaCC Run BLAST on NCBI transcript from alignment at scaffold_308:66270..68790+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058191 ID=TCONS_00058191|Name=TCONS_00058191|organism=Clytia hemisphaerica|type=transcript|length=2521bp|location=Sequence derived from alignment at scaffold_308:66270..68790+ (Clytia hemisphaerica)
tttttttttgaataaaatatttgacgtcaattctaAATTCACAATCTTCA
AAACGGAAGATAATCGCAGATAAATTCTTTTTCTAGTAATTTTATACAAA
ATGGAGCAGGTAAaactttttataatttgaagagTTTTCAAAGCTTTGAG
AGCAGGTAGAAACATAAAAGTAGTcgcaattttgaaaaatgtaaaattta
gattgaaaacttatttttcaattgCTTTCACGAAATGAAAACTCAAATCC
GGGAATATAGGGTTTGAAGAGCCAGCTAAGTATAAACCGGACTATTGTAT
ACAGACAAAACTAAATCTAGGTCAATAAATGAAAGTGTGACTTTTTATTT
AGTTCTGAGTAAACATACGAAGATTTTGTTTTCACAAATCTATTTTTTAC
ACATGAGGCAGTAATACACAGTTCTTTGTTTTCCCAACTTTTAGAACTTA
GTTTTGCCAAAGTCAGTCAATTTATTGGCCAGCGAATTAAACGTACAGAA
TGTGTCAAAAGATAGTATTCAAATTGAAAACGATATTGACGCTTCTTTTG
TTGGTGAAAGAGATGCTAGTCCTACGCGTCTGATTGGTCTATCTTTGCAA
CATGTGGATGTTCATTGTTATGGATGTTGGCGTATCTTATTTGTATGGAG
ATTTACGGATATATGTAAGTAGAATGATACCTTTGTATAACGTTTGTAAT
TTTTAAGTCATCTTTTTTGGTCGTTCGCTTTGAGAATGTTAGATGAATAA
TACCCGAAGATACGTATTGCGGGGGGTTGAGCAGGGTGAGCATAGCCCCA
TCACATCAAATCTTAAACCTTAAGTACTATGTTTTTATCTAATTAGGGTT
TTATTGAGTTTACAAGGTGCAAAAACatgaaagattttcatttttgccta
aaaatcAACACAAATAGTGTACTGTGTGTACAGTGTACAGGGAGTGAAAA
ATCGAGGAACATGTCAGAAAatagaaagttaaaaatattgttttgagCTG
TGCGCATAGGCGATTGTGAAATTacccgggggggcactcaatTTTGAAAG
CGACCGTAcgttcgacccttacagtgcaggaaagatttggctgaaaatcg
acccttatagtgcaatttttcgaaatttcttgCCCTTTTCagagcaaaat
ttttgaaatttgtcaaattctacctcaaaatttggtattttctcaaattt
tacacccttagagtgcactttttcccaatTGCTcgcaaatcaacccttac
agtgcactttccaaagtccaaaaaacctacccttaaagGGCCGCACGTCT
GGTAGGTCAattacctggagtgcccccctGCCCCGGGTGAAATTACCTTT
ACTCTCATGAATGAAATTCTGCTCTATCATTTTCAGGTTCCCAATCGTAG
AAGAGTCGGTCAACACAACTATTTTTGAAGACTTGTATAACTTTGTGTTT
GGAAAAGTAAAACACATTCCGAAAATTGAAGTATGGAACGATATGTACAA
GTTATGGGGCGTAATTACATTGTACTTTTCTCGATGTTACATTGTTTCAC
CAAAACTATTTTATGCTCGTAGAATTCGAAACTCTTTGATTGTATTGGTT
CATGTTTGCATGGTGTCTGTTGCATTTTATTACTACAAGATAAACGGGTA
AGTAGAgatcaccgtcaacaagaaacactCGTATATGATGCTTATTGGAT
GAAAACCCGATTCCCCTTGAAAGTCGAATTAGAAAGCTTCAACTATAGCC
CTGGGGGAGTAAGCAGTGGGGGAAGTGTTTGTAGTGTTAAGTTTGTTCCA
ATCTCTCCCGCCACTATTTTTTCCCGAATACCGCCGTGATGGCTGTAAAC
TATGCGCATATGTTTTTTTCTGCGTTACTACTATCCCattaacggacgat
agcatcgtctaccgTAGCTATATATCTCCAAAATTAATCATACTGAAGCA
TGGATAAATTATTTCGGCTGGCTTTAGGCTCATTATACTGTTTGTATATG
ATAATATCAATATATAAcattaattttttatattttagatTGACTTTTCA
ATCGTTAATTTTGTCAAAACCGCCACCACCCCCGCCAACACCGAGTTTGA
TGGAACAAATTACACCCATCATGCCCTACATTCTTATTCCTGTAGTTATC
GTATTTACAGTTTATTGCGTCGCAATTTTTACAAGTACCGCGATATTAAC
AACATTCGCAACTTTCTTTGCTATTGGAGTCAATACCATTTTAGGATGCC
CTTCAACTAAAGAGGATAAGTAAGTAAACCcgtttttatattaaaaaaaa
gtcatttttgacGACGATGCGACTTCTTCAGGCAACAAACTTGAAACTGC
CAACACTTTCCTTCATTGGAAGATCGAATGATAATAGTTAATGGATGCAA
GGTAGAAAAAGGCGGCTGTTTAAATTAGGGCTAAGCATAAGGAAGCTTTA
TACCTAAACCTAcctctttttatcgttcttGTTGTCTACTTTTAGcaaat
gcaggattctttagattaaCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058191-exon-scaffold_308-1491911889:66270..66378 | TCONS_00058191-exon-scaffold_308-1491911889:66270..66378 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1510915933:66270..66378 | TCONS_00058191-exon-scaffold_308-1510915933:66270..66378 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1575043694:66270..66378 | TCONS_00058191-exon-scaffold_308-1575043694:66270..66378 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1491911889:66714..66933 | TCONS_00058191-exon-scaffold_308-1491911889:66714..66933 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1510915933:66714..66933 | TCONS_00058191-exon-scaffold_308-1510915933:66714..66933 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1575043694:66714..66933 | TCONS_00058191-exon-scaffold_308-1575043694:66714..66933 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1491911889:67656..67916 | TCONS_00058191-exon-scaffold_308-1491911889:67656..67916 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1510915933:67656..67916 | TCONS_00058191-exon-scaffold_308-1510915933:67656..67916 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1575043694:67656..67916 | TCONS_00058191-exon-scaffold_308-1575043694:67656..67916 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1491911889:68308..68790 | TCONS_00058191-exon-scaffold_308-1491911889:68308..68790 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1510915933:68308..68790 | TCONS_00058191-exon-scaffold_308-1510915933:68308..68790 | Clytia hemisphaerica | exon |
| TCONS_00058191-exon-scaffold_308-1575043694:68308..68790 | TCONS_00058191-exon-scaffold_308-1575043694:68308..68790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:66270..68790 + |
Blast
The following BLAST results are available for this feature:
|
