TCONS_00058193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058193
Unique NameTCONS_00058193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058193 ID=TCONS_00058193|Name=TCONS_00058193|organism=Clytia hemisphaerica|type=transcript|length=378bp
TTTACACTAAAGACAAATTATTGATTTGTAGTCAGTATGTATAGACTTTG
GTATGCCAGTAGTTAAACCTCGAATATAAACATAGTCGATTTTTAGATTT
GAACATATTTGACTAAAGAGGTAAGGAGAAAGCGAAAGTTGATGGCTGCT
GCGGCGAGACCTGATAAAATAAACCAAAGATCTCAACTTCTTCAAGACCA
TGAAAACGAAGAAGTTTTCAAACTCATTGGACATCGCTGTAAGGCTTTAA
GCACAGTCGTTGCAGAAGTTCATCTATTGGTAAACAATGAATGGAAGAAG
GAACATGTTGGCGTAGCGTGTTTTGTAAAAGATAGTGCCAATAAGTCGTA
CTTTATTAGGCTTATTGATCTAAAAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_308:231597..232060+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058193 ID=TCONS_00058193|Name=TCONS_00058193|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_308:231597..232060+ (Clytia hemisphaerica)
TTTACACTAAAGACAAATTATTGATTTGTAGTCAGTATGTATAGACTTTG
GTATGCCAGTAGTTAAACCTCGAATATAAACATAGTCGATTTTTAGATTT
GAACATATTTGACTAAAGAGGTAAGGAGAAAGCGAAAGTTGATGGCTGCT
GCGGCGAGACCTGATAAAATAAACCAAAGATCTCAACTTCTTCAAGACCA
TGAAAACGAAGAAGTTTTCAAACTCATTGGACATCGCTGTAAGGTATGTA
GaaaagattttcagattttattataatttattgACATTCGCTACTTTATT
TTTAACTATACAATTCACTTATGATTTAGGCTTTAAGCACAGTCGTTGCA
GAAGTTCATCTATTGGTAAACAATGAATGGAAGAAGGAACATGTTGGCGT
AGCGTGTTTTGTAAAAGATAGTGCCAATAAGTCGTACTTTATTAGGCTTA
TTGATCTAAAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036671XLOC_036671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058193-exon-scaffold_308-1491911889:231597..231839TCONS_00058193-exon-scaffold_308-1491911889:231597..231839Clytia hemisphaericaexon
TCONS_00058193-exon-scaffold_308-1510915933:231597..231839TCONS_00058193-exon-scaffold_308-1510915933:231597..231839Clytia hemisphaericaexon
TCONS_00058193-exon-scaffold_308-1575043694:231597..231839TCONS_00058193-exon-scaffold_308-1575043694:231597..231839Clytia hemisphaericaexon
TCONS_00058193-exon-scaffold_308-1491911889:231926..232060TCONS_00058193-exon-scaffold_308-1491911889:231926..232060Clytia hemisphaericaexon
TCONS_00058193-exon-scaffold_308-1510915933:231926..232060TCONS_00058193-exon-scaffold_308-1510915933:231926..232060Clytia hemisphaericaexon
TCONS_00058193-exon-scaffold_308-1575043694:231926..232060TCONS_00058193-exon-scaffold_308-1575043694:231926..232060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:231597..232060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.53979	0	0	1.09561	0	0	1.11693	2.46488	0	0.639619	0	0.161526	7.14104	7.47259	0	0	0	0.43766	0.22539	0	0	0.307204	0	0
Blast
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BLAST of TCONS_00058193 vs. Swiss-Prot (Human)
Match: WASP (Wiskott-Aldrich syndrome protein OS=Homo sapiens GN=WAS PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.369e-16
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  172 NQRSQLLQDHENEEVFKLIGHRCKALSTVVAEVHLLV---NNEWKKEHVGVACFVKDSANKSYFIRLIDLK 375
            N  S LLQDHEN+ +F+++G +C  L+T V +++L +      W KEH G  CFVKD+  KSYFIRL  L+
Sbjct:   21 NIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPGAEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQ 91
The following BLAST results are available for this feature:
BLAST of TCONS_00058193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WASP1.369e-1647.89Wiskott-Aldrich syndrome protein OS=Homo sapiens G... [more]
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