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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058196 ID=TCONS_00058196|Name=TCONS_00058196|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CCCAACCAAATGGTAAATGGGTTGTAAAGGGAGATTTTTAATTCGTACAA
ATACATTTGACTGGGCGGAATAATTTTGTCGGATTagtgaaaatcaaaaa
cataatttcaaaCTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAG
AacgaagaaaaaatgttttctacggaGCCACCTTCAAGTGCTATACGAGT
TTTCAACACCCAGAGTATAGACAGGGATACTTGTCTCTTTCCGTTGACAC
TGAGGAAGACTAGTGACTCATCTATAATACTGGAAAATGGTGCAGGGAAG
TCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTAtaca
agaaaaagaagaacaagtTGAAATTTCGAATGAGCTTTCATCTATACCAT
CCTTATCACCGAAGCTGGTGAAGAaagaaacaacaacaaatcTATCGCGC
TCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTT
ATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGAT
CCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTC
GATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTT
CATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAAC
AACCAACACCTCCAGATTCTCCCAGATCAGCACAAATATTCTCGTTCAAT
CCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATAC
CACTGAACCATCACAGCGTCTCAGTAGATTCGATAGTCTACACCGGCCAA
TCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTT
CACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTC
TGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGCTT
TCTACAGCAGTGAGTTTCTACTccgtcaaaaagaaaaatggcgtcGGCCA
CGAACGGTTTACACTGAGAAGCAACTGGTTTCTCTTGAAAAAGCGTACAA
GAAGAACAAATATCTTCGCGGTGAAGAAAGAAAGGCATTATGTAAAACGC
TTAGCCTGGAGGAACGTCACATTAAAGTGTGGTATCAGAATCGACGGGCT
AAGGAGCGCGGACAAATTCGCCATGATAAATGGCTACAACGTTCCAAACG
CCATCAACTCTTAATGGCTCAACAACAAAAACAGAAGCTGAAACAGAAAG
AAAAGCAAGAAAGATTAAAACCTAATGACGAAGAAACTGAAGCTGGTCTA
ACTCAACAGGATAAATAATTTTCCATCCTTGGACGGCTTGTCTTACAAAG
CTAATATCGTTGAATTTGAAGCTCTATAACAGTTAGAAATATCATTAATA
TTTACCaggaaagaaaaagtgaatccTTTAGATTTGCatcgatacacgtt
ttttttataagaacacccaaaaattttgaagccct Run BLAST on NCBI transcript from alignment at scaffold_308:111900..113907- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058196 ID=TCONS_00058196|Name=TCONS_00058196|organism=Clytia hemisphaerica|type=transcript|length=2008bp|location=Sequence derived from alignment at scaffold_308:111900..113907- (Clytia hemisphaerica)
CCCAACCAAATGGTAAATGGGTTGTAAAGGGAGATTTTTAATTCGTACAA
ATACATTTGACTGGGCGGAATAATTTTGTCGGATTAGTGAAAATCAAAAA
CATAATTTCAAACTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAG
AACGAAGAAAAAATGTTTTCTACGGAGCCACCTTCAAGTGCTATACGAGT
TTTCAACACCCAGAGTATAGACAGGGATACTTGTCTCTTTCCGTTGACAC
TGAGGAAGACTAGTGACTCATCTATAATACTGGAAAATGGTGCAGGGAAG
TCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTATACA
AGAAAAAGAAGAACAAGTTGAAATTTCGAATGAGCTTTCATCTATACCAT
CCTTATCACCGAAGCTGGTGAAGAAAGAAACAACAACAAATCTATCGCGC
TCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTT
ATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGAT
CCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTC
GATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTT
CATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAAC
AACCAACACCTCCAGATTCTCCCAGATCAGCACAAATATTCTCGTTCAAT
CCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATAC
CACTGAACCATCACAGCGTCTCAGTAGATTCGATAGTCTACACCGGCCAA
TCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTT
CACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTC
TGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGGTA
ACTTCTAATGTTCAATTCTATTTTCATAAAGGCTTCATTTTCCTTTTTCT
TAACAAAAATTATTAACAATCTACTCGAAATCAAATCGAAGGCAGAACTT
CGAAATTAAGATCCAGCTCTTACTTTTACTGGTAAAAGGCACCAGTCACG
GGGGGGGGGGGACTCAGGCAAAAATGGTGCTGGGTATGTGTGGATTGACG
GCAAGGGTCTGTTTTTTCACCCTTCAAAGTCTCTCTAAGGGTTTCAAAAT
CGAAGAAAGGGTTACCTTTTCGGGAAAAATCAGTCTCTCTAAGGGTCTGG
TTTAGGAGGTCCAATCCGCACATACTCCTCATCCGCCAACCCTAGTACCC
AATTCAATTCAATTGATTTTATTTGAAAAGATCTCTTCTAAAATTGAAAT
GAAAATCCAGTTAATTTGCAGAGGATAGTGGTATTTAAGATTTCTAATGA
TTATTTGTTGTGTTATTTAGCTTTCTACAGCAGTGAGTTTCTACTCCGTC
AAAAAGAAAAATGGCGTCGGCCACGAACGGTTTACACTGAGAAGCAACTG
GTTTCTCTTGAAAAAGCGTACAAGAAGAACAAATATCTTCGCGGTGAAGA
AAGAAAGGCATTATGTAAAACGCTTAGCCTGGAGGAACGTCACATTAAAG
TGTGGTATCAGAATCGACGGGCTAAGGAGCGCGGACAAATTCGCCATGAT
AAATGGCTACAACGTTCCAAACGCCATCAACTCTTAATGGCTCAACAACA
AAAACAGAAGCTGAAACAGAAAGAAAAGCAAGAAAGATTAAAACCTAATG
ACGAAGAAACTGAAGCTGGTCTAACTCAACAGGATAAATAATTTTCCATC
CTTGGACGGCTTGTCTTACAAAGCTAATATCGTTGAATTTGAAGCTCTAT
AACAGTTAGAAATATCATTAATATTTACCAGGAAAGAAAAAGTGAATCCT
TTAGATTTGCATCGATACACGTTTTTTTTATAAGAACACCCAAAAATTTT
GAAGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058196-exon-scaffold_308-1575043694:112911..113907 | TCONS_00058196-exon-scaffold_308-1575043694:112911..113907 | Clytia hemisphaerica | exon |
| TCONS_00058196-exon-scaffold_308-1575043694:111900..112437 | TCONS_00058196-exon-scaffold_308-1575043694:111900..112437 | Clytia hemisphaerica | exon |
| TCONS_00058196-exon-scaffold_308-1510915933:112911..113907 | TCONS_00058196-exon-scaffold_308-1510915933:112911..113907 | Clytia hemisphaerica | exon |
| TCONS_00058196-exon-scaffold_308-1510915933:111900..112437 | TCONS_00058196-exon-scaffold_308-1510915933:111900..112437 | Clytia hemisphaerica | exon |
| TCONS_00058196-exon-scaffold_308-1491911889:112911..113907 | TCONS_00058196-exon-scaffold_308-1491911889:112911..113907 | Clytia hemisphaerica | exon |
| TCONS_00058196-exon-scaffold_308-1491911889:111900..112437 | TCONS_00058196-exon-scaffold_308-1491911889:111900..112437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:111900..113907 - |
Blast
The following BLAST results are available for this feature:
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