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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058198 ID=TCONS_00058198|Name=TCONS_00058198|organism=Clytia hemisphaerica|type=transcript|length=1008bp
ATTTGACTGGGCGGAATAATTTTGTCGGATTagtgaaaatcaaaaacata
atttcaaaCTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAGAacg
aagaaaaaatgttttctacggaGCCACCTTCAAGTGCTATACGAGTTTTC
AACACCCAGAGTATAGACAGGGATACTCGTCTCTTTCCGTTGACACTGAG
GAAGACTAGTGACTCATCTATGTTACTGGAAAATGGTGCAGGGAAGTCGA
CAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTAtacaagaa
aaagaagaacaagtTGAAATTTCGAATGAGCTTTCATCTATACCATCCTT
ATCACCGAAGCTGGTGAAGAaagaaacaacaacaaatcTATCGCGCTCTA
CGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTTATCT
CCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGATCCGC
AACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTCGATG
ACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTTCATC
AGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAACAACC
AACACCTCCAGATTCTCCCAGATCAGCACCAATATTCCCGTTCAATCCTC
ACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATACCACT
GAACCATCACATCGTCTCAGAAGATTCGATAGTCTACACCGTTCAATCAC
TTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTTCACC
GTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTCTGAA
CGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGCTTTCTA
CAGCAGTGAGTTTCTACTccgtcaaaaagaaaaatggcgtcGGCCACGAA
CGGTTTAC Run BLAST on NCBI transcript from alignment at scaffold_308:114174..115654- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058198 ID=TCONS_00058198|Name=TCONS_00058198|organism=Clytia hemisphaerica|type=transcript|length=1481bp|location=Sequence derived from alignment at scaffold_308:114174..115654- (Clytia hemisphaerica)
ATTTGACTGGGCGGAATAATTTTGTCGGATTAGTGAAAATCAAAAACATA
ATTTCAAACTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAGAACG
AAGAAAAAATGTTTTCTACGGAGCCACCTTCAAGTGCTATACGAGTTTTC
AACACCCAGAGTATAGACAGGGATACTCGTCTCTTTCCGTTGACACTGAG
GAAGACTAGTGACTCATCTATGTTACTGGAAAATGGTGCAGGGAAGTCGA
CAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTATACAAGAA
AAAGAAGAACAAGTTGAAATTTCGAATGAGCTTTCATCTATACCATCCTT
ATCACCGAAGCTGGTGAAGAAAGAAACAACAACAAATCTATCGCGCTCTA
CGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTTATCT
CCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGATCCGC
AACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTCGATG
ACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTTCATC
AGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAACAACC
AACACCTCCAGATTCTCCCAGATCAGCACCAATATTCCCGTTCAATCCTC
ACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATACCACT
GAACCATCACATCGTCTCAGAAGATTCGATAGTCTACACCGTTCAATCAC
TTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTTCACC
GTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTCTGAA
CGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGGTAACTT
CTAATGTTCAATTCTATTTTCATAAAGGCTTCATTTTCCTTTTTCTTAAC
AAAAATTATTAACAATCTACTCGAAATCAAATCGAAGGCAGAACTTCGAA
ATTAAGATCCAGCCTTTTCTTTTTCGGGGAAAAGGCCCCGGGCCCGGGGG
GGGGGGTACTCAGGCAAAAATGGTGCTGGGTATGTGTGGATTGACGGCAA
GGGTCTGTTTTTTCACCCTTCAAAGTCTCTCTAAGGGTTTCAAAATCGAA
GAAAGGGTTACCTTTTCGGGAAAAATCAGTCTCTCTAAGGGTCTGGTTTA
GGAGGTCCAATCCGCACATACTCCTCATCCGCCAACCCTAGTACCCAATT
CAATTCAATTGATTTTATTTGAAAAGATCTCTTCTAAAATTGAAATGAAA
ATCCAGTTAATTTGCAGAGGATAGTGGTATTTAAGATTTCTAATGATTAT
TTGTTGTGTTATTTAGCTTTCTACAGCAGTGAGTTTCTACTCCGTCAAAA
AGAAAAATGGCGTCGGCCACGAACGGTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058198-exon-scaffold_308-1575043694:114712..115654 | TCONS_00058198-exon-scaffold_308-1575043694:114712..115654 | Clytia hemisphaerica | exon |
| TCONS_00058198-exon-scaffold_308-1575043694:114174..114238 | TCONS_00058198-exon-scaffold_308-1575043694:114174..114238 | Clytia hemisphaerica | exon |
| TCONS_00058198-exon-scaffold_308-1510915933:114712..115654 | TCONS_00058198-exon-scaffold_308-1510915933:114712..115654 | Clytia hemisphaerica | exon |
| TCONS_00058198-exon-scaffold_308-1510915933:114174..114238 | TCONS_00058198-exon-scaffold_308-1510915933:114174..114238 | Clytia hemisphaerica | exon |
| TCONS_00058198-exon-scaffold_308-1491911889:114712..115654 | TCONS_00058198-exon-scaffold_308-1491911889:114712..115654 | Clytia hemisphaerica | exon |
| TCONS_00058198-exon-scaffold_308-1491911889:114174..114238 | TCONS_00058198-exon-scaffold_308-1491911889:114174..114238 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:114174..115654 - |
Blast
The following BLAST results are available for this feature:
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