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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058201 ID=TCONS_00058201|Name=TCONS_00058201|organism=Clytia hemisphaerica|type=transcript|length=3773bpRun BLAST on NCBI protein sequence of ARNT >TCONS_00058201-protein ID=TCONS_00058201-protein|Name=ARNT|organism=Clytia hemisphaerica|type=polypeptide|length=750bp MMHQGFGGGGGGGPGNYRKRTKPTGLRGDGSDDDDHFNGGKPKNARFESKRun BLAST on NCBI transcript from alignment at scaffold_308:131448..163989- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058201 ID=TCONS_00058201|Name=TCONS_00058201|organism=Clytia hemisphaerica|type=transcript|length=32542bp|location=Sequence derived from alignment at scaffold_308:131448..163989- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_308:131448..163989- >TCONS_00058201 ID=TCONS_00058201|Name=TCONS_00058201|organism=Clytia hemisphaerica|type=CDS|length=38301bp|location=Sequence derived from alignment at scaffold_308:131448..163989- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058201 vs. Swiss-Prot (Human)
Match: ARNT (Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens GN=ARNT PE=1 SV=1) HSP 1 Score: 419.853 bits (1078), Expect = 3.539e-129 Identity = 213/418 (50.96%), Postives = 285/418 (68.18%), Query Frame = 3
Query: 186 DDDHFNGGKPKNARFESKEQS--KERFARENHSEIERRRRNKMNAYINELSDMVPSCNGLIRKPDKLTILKMAVSYMKSLKGDP-SAPEGSFKPTFLSDQELKHLVLEAADGFLFAVDCSSGNILYVSDSVTPVLNQSQNEWINKSFYDVIHPEDINKIKDQLNT-EVSNDTRILDLKTGNVRTDGNSPANSLANGSRRNFIVRMKCGNYEGDCEDVDAHLMEIKNRCKEKRISYKD--EAYSVVHCTGYIRD----ANQLHDTEDEMMQQIQSDKGDLGGGELCLVAIGRLQPTSMPTSKDLIESAPATEFITRQTLDGRFSFVDQRVTEILGYRPIDLLGKLCYEFYSENDVDHMKESFEQVLKLKGQPLSIRYHFKHMNGELVAMRSSCYSFQNPYTDEAEYIVCTNNLIKSKTE 1409
DDD + K + AR + ++ S KER ARENHSEIERRRRNKM AYI ELSDMVP+C+ L RKPDKLTIL+MAVS+MKSL+G ++ +GS+KP+FL+DQELKHL+LEAADGFLF V C +G ++YVSDSVTPVLNQ Q+EW + YD +HP+D++K+++QL+T E + RILDLKTG V+ +G + + GSRR+FI RM+CG+ D V+ L ++NRC+ S KD + VVHCTGYI+ L D + E Q G + CLVAIGRLQ TS P D+ TEFI+R ++G F+FVD R +GY+P +LLGK EF D +++SF+QV+KLKGQ LS+ + F+ N E + MR+S ++FQNPY+DE EYI+CTN +K+ ++
Sbjct: 63 DDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVN-RLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQ----------GSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 469 The following BLAST results are available for this feature:
BLAST of TCONS_00058201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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