TCONS_00058207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058207
Unique NameTCONS_00058207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058207 ID=TCONS_00058207|Name=TCONS_00058207|organism=Clytia hemisphaerica|type=transcript|length=386bp
TTACAATAAAGATGGGTTATAGATAGTGTggatattttacaaaaattcaa
aggAACGAAAAATAGCTCTCTATCAAAAAGATATCTGTATATGAGTTTTT
AGTTACAAACACCGTCAATGAAGTTTTGTTCCGTCAAATCAGACCATTCG
TGAAACAGTGCTGAATTCGGCTGAATGAACCAAGACAactttgtcaaatt
tttcattgaaaccaAAGACACAGAAACGTTGCTTTTGTGGTGCTTTGTGA
AATCCTTTGAAAGCCTCAATGCACTCGTTTGTGATTTTGATGCCGGAATC
TACCATATTTGATGATCAAGACTTGTCTGTGTTAAATTTTACTTTCTTCT
TCAGTTTACCAAGTTTGAGATTGAATGTTTGCTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_308:14535..14920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058207 ID=TCONS_00058207|Name=TCONS_00058207|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at scaffold_308:14535..14920 (Clytia hemisphaerica)
TCAAGCAAACATTCAATCTCAAACTTGGTAAACTGAAGAAGAAAGTAAAA
TTTAACACAGACAAGTCTTGATCATCAAATATGGTAGATTCCGGCATCAA
AATCACAAACGAGTGCATTGAGGCTTTCAAAGGATTTCACAAAGCACCAC
AAAAGCAACGTTTCTGTGTCTTtggtttcaatgaaaaatttgacaaagtT
GTCTTGGTTCATTCAGCCGAATTCAGCACTGTTTCACGAATGGTCTGATT
TGACGGAACAAAACTTCATTGACGGTGTTTGTAACTAAAAACTCATATAC
AGATATCTTTTTGATAGAGAGCTATTTTTCGTTcctttgaatttttgtaa
aatatccACACTATCTATAACCCATCTTTATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036678XLOC_036678Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058207-exon-scaffold_308-1491911889:14535..14920TCONS_00058207-exon-scaffold_308-1491911889:14535..14920Clytia hemisphaericaexon
TCONS_00058207-exon-scaffold_308-1510915933:14535..14920TCONS_00058207-exon-scaffold_308-1510915933:14535..14920Clytia hemisphaericaexon
TCONS_00058207-exon-scaffold_308-1575043694:14535..14920TCONS_00058207-exon-scaffold_308-1575043694:14535..14920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:14535..14920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200439	0	0.453895	0	0.270304	0	0.773089	0.241252	6.08063	20.9218	15.7221	0.93444	0.933141	2.72264	0.227632	0.366426	0	0	1.70457	2.52045	2.00378	0.567161	0	0.417879	0	0.192063	47.9111	48.7765	148.645	54.5034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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