TCONS_00058211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058211
Unique NameTCONS_00058211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058211 ID=TCONS_00058211|Name=TCONS_00058211|organism=Clytia hemisphaerica|type=transcript|length=311bp
GcaacaaaaaatggaaaataaacatCATGACTGAGAAACTGTGTGTAGAT
ATTGATCATAGTTATTCCAGTCATGCAAGTTTCATTAAACAGGCCATCTC
TTGAACGAAGGTATTGGTGCATGTATTCATATCGGTCGAAATCTGGCTCT
TGTATCACATCAAGTAGATTTTTAAGCAAGATATTCTTTGTCTCTACAGG
CGTACCATTATTCGCAATTGAAAAGAAAAGCCGATTGATCGGCAACCAAT
ttggaagataaaaaaaatcttcacaGTTAAGAATGATGTTCCATAACCGA
TCAGCTTGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_308:223587..223897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058211 ID=TCONS_00058211|Name=TCONS_00058211|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at scaffold_308:223587..223897 (Clytia hemisphaerica)
CTTCAAGCTGATCGGTTATGGAACATCATTCTTAACtgtgaagatttttt
ttatcttccaaATTGGTTGCCGATCAATCGGCTTTTCTTTTCAATTGCGA
ATAATGGTACGCCTGTAGAGACAAAGAATATCTTGCTTAAAAATCTACTT
GATGTGATACAAGAGCCAGATTTCGACCGATATGAATACATGCACCAATA
CCTTCGTTCAAGAGATGGCCTGTTTAATGAAACTTGCATGACTGGAATAA
CTATGATCAATATCTACACACAGTTTCTCAGTCATGatgtttattttcca
ttttttgttgC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036682XLOC_036682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058211-exon-scaffold_308-1491911889:223587..223897TCONS_00058211-exon-scaffold_308-1491911889:223587..223897Clytia hemisphaericaexon
TCONS_00058211-exon-scaffold_308-1510915933:223587..223897TCONS_00058211-exon-scaffold_308-1510915933:223587..223897Clytia hemisphaericaexon
TCONS_00058211-exon-scaffold_308-1575043694:223587..223897TCONS_00058211-exon-scaffold_308-1575043694:223587..223897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:223587..223897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04306	0.33905	1.18101	0.385144	0	0	1.34102	1.25545	0.29299	0	2.11353	1.2853	11.6602	7.85007	3.75114	8.37419	1.82705	3.2103	3.696	4.64111	0.336164	0	1.02021	0.901684	1.11989	0.424074	0	0	0.385906	0.786355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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