TCONS_00058214 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058214
Unique NameTCONS_00058214
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058214 ID=TCONS_00058214|Name=TCONS_00058214|organism=Clytia hemisphaerica|type=transcript|length=296bp
CATGAACACGATGAAAGCTCTGGATTGAACCCTGTTTACACTGAAGTACA
TTCGCCTCTCGTTACAAATGCTGATAATGATGGAATCAAGGACATAGGAA
CACATCACTGTGAAAAATACAGTCCTCTAGCTGACACCACACCAGTCGCA
GAAACTTTCAaagatcttttaaaagaatcacGAGGCAAAAGAACGAATAG
AAAACATACCATCAGAGCCAAAGATGGTGTTAAGCTGTACGACGGTTCCT
CAGCCGATTCCTCTTCTGAGTCAAGTGATGAAGATCAAGAGCCGCA
Run BLAST on NCBI

transcript from alignment at scaffold_309:73250..75541+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058214 ID=TCONS_00058214|Name=TCONS_00058214|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at scaffold_309:73250..75541+ (Clytia hemisphaerica)
CATGAACACGATGAAAGCTCTGGATTGAACCCTGTTTACACTGAAGTACA
TTGTGAGtaatttaattgttttattGTATGCAAAACATAATCAAGCATGT
TTATTGTATAATCAAGATTATGGAACCTTTTCACTATAtggtgaaaattt
ttgaatggttTTAGTTATATGAAATCATCTTCGTTTTAGCGCCTCTCGTT
ACAAATGCTGATAATGATGGAATCAAGGACATAGGAACACATCACTGTGA
AAAATACAGTATGAAATTTAAGTACTAATTTTCCAAGGGTTAATAAGTAG
TTTTAATCGACGATAAGGGTGCCCCGGTAGTAACACATTCATATTTGCTA
TGATCATGTCATCATTTTCACGATTTCTATTAGCCTGGAGGTCACCTAGA
GCTTTTTGATAGAATGGATGAAGTATTGGGCGCctaatcaaaaattatca
gaaaacaAATTTAACCTATGATTAGACTCAAATCTAGATTTTTATCAGTA
TAAGACCATCGTATTAGCATATCAGCGTTGAATCTATCATggatatttta
gaaaaataattacttgaGGCATACAAAACTAGACCactaaaaacattcaa
aactaaCAAAAGCAAAACTAAAGTATCCAAGCCACATGTACAGGTAGCCA
TCGACCAATCAGGTTCATTCAAAAATGCAGGGAAGAATTTGTGTAAGTAG
ATGAGTTACTTGCACTGGACCGTGAATCAGAgagaaaattataataaaaa
tttacattacAATAGTCAGTACACGATCTGGATACCAAGACTATGTTGAA
TCTGTCAAAACCAATTTTATATCACTATTTAGGTCCTCTAGCTGACACCA
CACCAGTCGCAGAAACTTTCAaagatcttttaaaagaatcacGAGGTATG
TAATTTGGTCTATCATATGGTAGACCGACCCAACATGGAAACAACCTTTC
ATGTACAAAGAATTACTCTTATGATATTTTGTGAATAGTTTTTCACGTTT
TTCAAACAGTCTGGTGGCGAAAAAGGAGTATTGTTTTACTGATTATCTTG
CAATTTTACCATCCTTAGAATCGGTTTTTACCACGCTGGCAAAGCTGTGG
AAATTTCTTTCTGCTTTCGGCATTTTACTTTAGCCTAGGGGTCCAAAGAA
AGTAGATTTTCGAAATTATTGttttattaacttttatttaccTATTTTTT
TAGGGTCTGATTTCAAAGGCCCGTTTTTGGGCCACACCTATGGTCGTTAT
TGAATCGCGagtgcaccccccccccttactTGAAAGCTTACCGCCTTCAT
CATCAGTGTTTTTTGTTGTATTAGGCAAAAGAACGAATAGAAAACATACC
ATCAGAGCCAAAGGTAATTCATTGTGATTTATTAATTGTCTCTCCTGCGG
cttcaaaatttaaacagtGTTTTCACCATTGCTTCCTGTTCTTAGCGTTG
ACCATTCTTTTTTACCTAAATTACATAAACTTTTTTCATGGCATAAAAAC
CATTTATTATGGTGCGATCGAAAACGTCTTCATAACGGTACCATAgttta
aacatttaaaattttcactccATCGCACTGCTTTCGGAATTTGAAAATCG
TCTCGTTACTCAACCTCTATTTTATTTACAGATGGTGTTAAGCTGTACGA
CGGTTCCTCAGCCGATTCCTCTTCTGAGTCAAGTGATGAAGGTAAAAATT
TATCTAAATTTCCTTAAGGGTACTAAGTTTTCGGGAACTAAATTTTATAC
GGTTTTTTATTTCGGATTTAGCTACAAACTGCAAAATTCAGTTCccacca
aattttacaaatgctAAGAAAATTCGTTACTTAGATGATTTAAAATTTAC
AGGCTGCcatttttaaaatccacaatttcctcaaaaataatCTCCAATCA
GCGGACCGCAAAAATCATTCCCACAAAAAATTGTCTAATAATTATCGTCT
AAAAGTTCGAAttaaattgaatttgaattagacTAAAAGATTCTCaacaa
aaaactaaatttttcgtCCATAAGCACAATCAAGTATTGGcattctcaaa
tttcaaattcttttaaaaaaaaggatAATTCATGCGTTTATCTTGCTCAG
CTAAAACCGACAATGTCTGAATTTCTTGGTAAAACCAACAAGGTTTAACA
TGAAAATCTAGTAGGTAAAAAGGATGTCcagttattcgaagtaaattcaT
ATCCCCTTTGGAGCTTTGAATAACCGGGAATCTACTGTAAGAAAATTTAA
TGATTACAAACTTCTCTTTTACCGTGTAGATCAAGAGCCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036685XLOC_036685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058214-exon-scaffold_309-1491911889:73250..73301TCONS_00058214-exon-scaffold_309-1491911889:73250..73301Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:73250..73301TCONS_00058214-exon-scaffold_309-1510915933:73250..73301Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:73250..73301TCONS_00058214-exon-scaffold_309-1575043694:73250..73301Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1491911889:73439..73507TCONS_00058214-exon-scaffold_309-1491911889:73439..73507Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:73439..73507TCONS_00058214-exon-scaffold_309-1510915933:73439..73507Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:73439..73507TCONS_00058214-exon-scaffold_309-1575043694:73439..73507Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1491911889:74082..74144TCONS_00058214-exon-scaffold_309-1491911889:74082..74144Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:74082..74144TCONS_00058214-exon-scaffold_309-1510915933:74082..74144Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:74082..74144TCONS_00058214-exon-scaffold_309-1575043694:74082..74144Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1491911889:74574..74612TCONS_00058214-exon-scaffold_309-1491911889:74574..74612Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:74574..74612TCONS_00058214-exon-scaffold_309-1510915933:74574..74612Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:74574..74612TCONS_00058214-exon-scaffold_309-1575043694:74574..74612Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1491911889:74881..74940TCONS_00058214-exon-scaffold_309-1491911889:74881..74940Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:74881..74940TCONS_00058214-exon-scaffold_309-1510915933:74881..74940Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:74881..74940TCONS_00058214-exon-scaffold_309-1575043694:74881..74940Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1491911889:75529..75541TCONS_00058214-exon-scaffold_309-1491911889:75529..75541Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1510915933:75529..75541TCONS_00058214-exon-scaffold_309-1510915933:75529..75541Clytia hemisphaericaexon
TCONS_00058214-exon-scaffold_309-1575043694:75529..75541TCONS_00058214-exon-scaffold_309-1575043694:75529..75541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:73250..75541 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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