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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058215 ID=TCONS_00058215|Name=TCONS_00058215|organism=Clytia hemisphaerica|type=transcript|length=1455bpRun BLAST on NCBI protein sequence of TCONS_00058215-protein >TCONS_00058215-protein ID=TCONS_00058215-protein|Name=TCONS_00058215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp MCIVKQVAKQALNTFKFTESSLFPSQFEKLLTLAEKIKETDVGLDSELKERun BLAST on NCBI transcript from alignment at scaffold_309:80737..116466+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058215 ID=TCONS_00058215|Name=TCONS_00058215|organism=Clytia hemisphaerica|type=transcript|length=35730bp|location=Sequence derived from alignment at scaffold_309:80737..116466+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:80737..116466+ >TCONS_00058215 ID=TCONS_00058215|Name=TCONS_00058215|organism=Clytia hemisphaerica|type=CDS|length=6960bp|location=Sequence derived from alignment at scaffold_309:80737..116466+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058215 vs. Swiss-Prot (Human)
Match: AEDO (2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 3.429e-28 Identity = 80/267 (29.96%), Postives = 129/267 (48.31%), Query Frame = 1
Query: 109 IVKQVAKQALNTFKFT---------------ESSL---FPSQFEKLLTLAEKIKETDVGLD----SELKEQTSDAPVTFINIYEGSIFTLGIFIIRKGHSLPLHDHPGMFGVCKPLFGTLHVKSYQRLEERH-------PQDSSFKNLLAVKK--------LPEKLVKAESVDQCQVLTPMLGNFHTISAVREDAAIFDILSPPY--TNGRDCSYYRELS---TEEQKSYGIDLSSEERSNGLTFLKQIPPPASFYCDSKEYKGPII 783
+++++A+QA TF+ + E+ + FP KL +L +++ D+ + + + PVT+++IYE F+LG+F+++ G S+PLHDHPGM G+ K L+GT+ + +L+ P + F+ L ++ L + E+ C +LTP N H I AV AA DIL+PPY +GRDC YYR L +E S DL E +L + P F+C+ + Y GP +
Sbjct: 9 LIQRIARQACLTFRGSGGGRGASDRDAASGPEAPMQPGFPENLSKLKSLLTQLRAEDLNIAPRKATLQPLPPNLPPVTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAVRPGVLRSRAEYTEASGPC-ILTPHRDNLHQIDAVEGPAAFLDILAPPYDPDDGRDCHYYRVLEPVRPKEASSSACDLPRE------VWLLETPQADDFWCEGEPYPGPKV 268 The following BLAST results are available for this feature:
BLAST of TCONS_00058215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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