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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058225 ID=TCONS_00058225|Name=TCONS_00058225|organism=Clytia hemisphaerica|type=transcript|length=1676bpRun BLAST on NCBI protein sequence of TCONS_00058225-protein >TCONS_00058225-protein ID=TCONS_00058225-protein|Name=TCONS_00058225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp QIEASHCNTKTNKMADEAAIFVAIALGLLFFVIPLYLLTFRKKEEDEPQARun BLAST on NCBI transcript from alignment at scaffold_309:251598..267483+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058225 ID=TCONS_00058225|Name=TCONS_00058225|organism=Clytia hemisphaerica|type=transcript|length=15886bp|location=Sequence derived from alignment at scaffold_309:251598..267483+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:251598..267483+ >TCONS_00058225 ID=TCONS_00058225|Name=TCONS_00058225|organism=Clytia hemisphaerica|type=CDS|length=18057bp|location=Sequence derived from alignment at scaffold_309:251598..267483+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058225 vs. Swiss-Prot (Human)
Match: TBL2 (Transducin beta-like protein 2 OS=Homo sapiens GN=TBL2 PE=1 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.833e-107 Identity = 166/381 (43.57%), Postives = 246/381 (64.57%), Query Frame = 3
Query: 186 PNTSNSQKKLRN--PVSKKKVQQNLNDNGINHPYLISSLKGHTGPITSLDFSDNGKLLASSSEDRTVRLWNVKDFREKDHKYGRGNVEFDHASDVAFSPDSRAFVASLANEQKIRVFKIHKEKKETGSTTMSISPEFDFDKIHKSAIISVGISSTGKYIMTADKGTQIIIWSIKGEVYDKIDTLLMYNTFASISPCGNLVAACGFTSEVKLWHMQFSKSGDFQQTLKAFEIKGHRAGVLSFSFTNDSKRFATASKDGTWKVWDINVNYLKSQEAYLLSTGNFTGYEEGLNVNIALTHDYFTVALSVGSHLKYYDSKSGEMDKEILHAHPGSICALRWYTDSKMLVSSGGTDRMLRVWENIHGAKANLADLKEKLKRTTSAS 1322
P+ S+ KK + + K+K QQ+ H L ++LK H+G I+ +DFS NGK LA+ ++DRT+R+W+ KDF +++H+ R NVE DHA+ V FSPD RAF+ LAN +RVFK+ K+E G T + +PE DF K HK+ +I +GI++TGK+IMTA T ++IWS+KG+V I+T M NT A++SPCG VA+CGFT +VK+W + F K G+FQ+ ++AFE+KGH A V SF+F+NDS+R A+ SKDGTWK+WD +V Y K Q+ YLL TG F +AL+ + +AL+ GS + Y+++ GE ++ H I L + + L S G DR +R++ N G +A + +++ LKR ++ S
Sbjct: 52 PDKSSGSKKQKQYQRIRKEKPQQH----NFTHRLLAAALKSHSGNISCMDFSSNGKYLATCADDRTIRIWSTKDFLQREHRSMRANVELDHATLVRFSPDCRAFIVWLANGDTLRVFKM--TKREDGGYTFTATPE-DFPKKHKAPVIDIGIANTGKFIMTASSDTTVLIWSLKGQVLSTINTNQMNNTHAAVSPCGRFVASCGFTPDVKVWEVCFGKKGEFQEVVRAFELKGHSAAVHSFAFSNDSRRMASVSKDGTWKLWDTDVEYKKKQDPYLLKTGRFEEAAGAAPCRLALSPNAQVLALASGSSIHLYNTRRGEKEECFERVHGECIANLSFDITGRFLASCG--DRAVRLFHNTPGHRAMVEEMQGHLKRASNES 423 The following BLAST results are available for this feature:
BLAST of TCONS_00058225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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