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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058226 ID=TCONS_00058226|Name=TCONS_00058226|organism=Clytia hemisphaerica|type=transcript|length=940bp
cgtcaaataagTATGAAAGTATGATtacaaatttttgttgtttatgCATT
TATAAAGGAgcttataatttatttttcagattcaaaaaaaagtttaaaag
acaAATCCTGATAATAATTAATAATATGACTATGGCAACAATTACAGCAA
ATTTACCTGATAACCAAAACAATGATGCATTAATTGCTTATCAATTCTTG
GattacaataaaaatgaaaccaTCAAAGAAAATATCCTTATGGTAGATGA
gatctttcaaaatataaaagacATTCGATCGTTACACAGTCAGAAAAAGA
CGTTGAATCAAACAAAGAGATTTCTTTTACATAGATCACTTCAAAAACGA
CATGCGAATCGTGGAACCAGGGAGGATGCAGATGATATTTGTAAACCAGT
GACTAATAACAGGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAATGG
CTGTCCCCTTGATCGGTGATTATATCAAAGCACAAGAAGAATATATCCAA
AATGCTGTTAAAAATATAACAGATTATGTGGGTGATATCACAAAGGAATT
ATTATCGACCAAGATGGAATACAGTCTAAATCTAGCCTGTAAACAAGTTC
AATATCAGCCTCCAGTCACGTGTCTCACGTCAAAGAAGAAACATgaaaaa
ttacgcatgcgtaatgAGGAAGCAGAAAAAATTCTTCACAAATGCGAGCA
ATTGAAAGAAGCATTAAAAGCCTTAGAACCGGTTTCTAGAAAAACGAAAT
TCAAGAAACGTTTCGAGAGCAGACGTGATgctatgaaatattttttgagc
acTCGAAAGTCGGATTCGGAGCTAGATTTTGATATAAGCACAAGAGGTGA
ATTTATTGTCGAAGAATTACGTAATGATTTGAATAGTCAATATTGGTAAA
AATTTATTGGTTAatattttataacatttttcaattcatg Run BLAST on NCBI protein sequence of TCONS_00058226-protein >TCONS_00058226-protein ID=TCONS_00058226-protein|Name=TCONS_00058226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
SNKYESMITNFCCLCIYKGAYNLFFRFKKKFKRQILIIINNMTMATITAN
LPDNQNNDALIAYQFLDYNKNETIKENILMVDEIFQNIKDIRSLHSQKKT
LNQTKRFLLHRSLQKRHANRGTREDADDICKPVTNNRREWQDRRDLLKMA
VPLIGDYIKAQEEYIQNAVKNITDYVGDITKELLSTKMEYSLNLACKQVQ
YQPPVTCLTSKKKHEKLRMRNEEAEKILHKCEQLKEALKALEPVSRKTKF
KKRFESRRDAMKYFLSTRKSDSELDFDISTRGEFIVEELRNDLNSQYW Run BLAST on NCBI transcript from alignment at scaffold_309:268078..271123+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058226 ID=TCONS_00058226|Name=TCONS_00058226|organism=Clytia hemisphaerica|type=transcript|length=3046bp|location=Sequence derived from alignment at scaffold_309:268078..271123+ (Clytia hemisphaerica)
cgtcaaataagTATGAAAGTATGATtacaaatttttgttgtttatgCATT
TATAAAGGAgcttataatttatttttcagattcaaaaaaaagtttaaaag
acaAATCCTGATAATAATTAATAATATGACTATGGCAACAATTACAGGTA
AGTGTAGCCAACACTCTCTAAACATATACCGTCGTTTTCTATAAGTTTCT
CGtttcctttgccacttttctatCGGAAAAACACCAGGACTTTGGGTAGT
TAAAAAATGAGCTTCGGAAAGTTGGGCAGTTTTGttagtaaacacaagat
tttccctACCATTAGAAACAAACTCTTTCCAATCGCTTGCCGGCCATccc
gggaaaaatagcggaaagattTCGGAAATGTGGCAAGAATTTTATTACGG
AAATGAAAAACTTATAAAAATGATGGTATTATACGAATCTCTCTGTGTTT
CGAGTTCTTGACTGGTATATATTTTGCTAGCTAAAGTGAAAGCTGGAAGA
CTGGCGAGATTCTAAGCCCTCACGTTTAATTGATAACATAAAACAATAAT
TAcccttttttaaagaacattcaaaatttttgaaaacctttcgacttttt
cagtgtttttatcaattttcctaagaaatcgggtacatgtttttttttat
acaaacaaactatataagaacataaggcttcgatgaccaatatgttaaga
acatttcaaggcttcgtggactctaaagcacccaatttcttagaaaaatg
gacaaaaatactcacaaaatggcgaaaataagaacatgctaagaacattt
ttaggtctaaaactcaaaaagagaattcaaaggcttcaaaaattttggat
gttcttatagagAAACGTGTAATGCAAACCCTTACAATGTTGTTGAGTTG
CTCTCgatagccatcgaagccttattataatttatttctttattttctgt
ATTTCATAGCAAATTTACCTGATAACCAAAACAATGATGCATTAATTGCT
TATCAATTCTTGGattacaataaaaatgaaaccaTCAAAGAAAATATCCT
TATGGTAGATGAgatctttcaaaatataaaagacATTCGATCGTTACACA
GTCAGAAAAAGACGTTGAATCAAACAAAGAGATTTCTTTTACATAGATCA
CTTCAAAAACGACATGCGAATCGTGGAACCAGGTATGATCTTTCTTaacc
cctttctcacagccccgatggCAGTTTTTCcatcagtggggatgaaaatc
tTTATCGAAATCCGAATGGGGATATAGATCTTCTATTGTTCTCTGATCAA
AAATTGCAGTGgtatttttttccattgaatttcaagtggggatgaaattt
tagggtatttttcctccGGGGGCAAAATTTGGGGCAAATTTTCCAGTTGG
GCTGGGGGTCCCCGCGGGTCTGTAACACGGgtttactttatttttgttaa
aggaataatcagatggtttgagatatttggcctgtgttttcaaaactgaa
aaaaattctattgtccTAAGCCAAAActaattaagattttttttttgcct
aacTATTTTCCAGAGTCCACGTTTCATTCGTCACATTATCCTAAAAAGAG
TAGATACAAAaggacaaaaaaacaaaagtttcaaaaatgttttctaaaTG
TTGAATCTCCCAATTCTCTTTAGGGAGGATGCAGATGATATTTGTAAACC
AGTGACTAATAACAGGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAA
TGGCTGTCCCCTTGATCGGTGATTATATCAAAGCACAAGAAGAATATATC
CAAAATGCTGTTAAAAATATAACAGATTATGTGGGTAAGTAAATGAGTAG
ACTGGAATATAGTTTTCTACCGAATAAATGGGATGGcttattccagaaaa
aattagCACCCCCCTTATGTTGAGGAAGTCTTTTTTTGGAAAGGTGatcc
cctggattttttttcaattttttaggacgcccttggatttttttcatttt
tggacctcCATGTATTTCGAGCCTCGGTCTACTGACCCcctgaatttttt
atttatcagACCACCCTAGACGTAACCTCTCGACATACGGGGTATaaaga
ctatttctggaatagcccaatatcTTTTCTTAAACCTTAAATGCTCCTTG
GAATTTTCTCAAAACGCTTTTGATTTAACCTAGATAGATTTCATAGATTT
TGATTCTTTAACGGCTGTTTTAACCTCTAAGGGTTATAAATTTTCAGTCT
TGAAGACTCTACGAGGCCGTGTTAGACGCATATTTCCCCCcttatttaga
aaaaattctaaaaataaaaactttaacattttcaactgtcgttttctatt
atttttaaatctgCAGATGCTCACAATCTTCTACTTCAACAGTCTATATG
CAATATGCTCTTGATGATATTCTCGAaacgttttgatttttttcatgaaa
ggcTGAAAAGGGGACTATACTGTATATCCACCGCATTTCCTGAAACAATT
ACAACTTGCCACTCTCCAACAGAAAAATCACTGAAATGTTAGTGAGTTTC
TCACCAAGACAAGTCTCTTACTAGAGTCTTAAATAAGGCTCTAAGCTGAA
GGTCACCATTCAAAACATTGTCTATTGATCATTTTAGGTGATATCACAAA
GGAATTATTATCGACCAAGATGGAATACAGTCTAAATCTAGCCTGTAAAC
AAGTTCAATATCAGCCTCCAGTCACGTGTCTCACGTCAAAGAAGAAACAT
gaaaaattacgcatgcgtaatgAGGAAGCAGAAAAAATTCTTCACAAATG
CGAGCAATTGAAAGAAGCATTAAAAGCCTTAGAACCGGTTTCTAGAAAAA
CGAAATTCAAGAAACGTTTCGAGAGCAGACGTGATgctatgaaatatttt
ttgagcacTCGAAAGTCGGATTCGGAGCTAGATTTTGATATAAGCACAAG
AGGTGAATTTATTGTCGAAGAATTACGTAATGATTTGAATAGTCAATATT
GGTAAAAATTTATTGGTTAatattttataacatttttcaattcatg Coding sequence (CDS) from alignment at scaffold_309:268078..271123+ >TCONS_00058226 ID=TCONS_00058226|Name=TCONS_00058226|organism=Clytia hemisphaerica|type=CDS|length=3588bp|location=Sequence derived from alignment at scaffold_309:268078..271123+ (Clytia hemisphaerica)
tcaaataagTATGAAAGTATGATtacaaatttttgttgtttatgCATTTA
TAAAGGAgcttataatttatttttcagattcaaaaaaaagtttaaaagac
aAATCCTGATAATAATTAATAATATGACTATGGCAACAATTACAGCAAAT
TTACCTGATAACCAAAACAATGATGCATTAATTGCTTATCAATTCTTGGa
ttacaataaaaatgaaaccaTCAAAGAAAATATCCTTATGGTAGATGAga
tctttcaaaatataaaagacATTCGATCGTTACACAGTCAGAAAAAGACG
TTGAATCAAACAAAGAGATTTCTTTTACATAGATCACTTCAAAAACGACA
TGCGAATCGTGGAACCAGGGAGGATGCAGATGATATTTGTAAACCAGTGA
CTAATAACAGGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAATGGCT
GTCCCCTTGATCGGTGATTATATCAAAGCACAAGAAGAATATATCCAAAA
TGCTGTTAAAAATATAACAGATTATGTGGGTGATATCACAAAGGAATTAT
TATCGACCAAGATGGAATACAGTCTAAATCTAGCCTGTAAACAAGTTCAA
TATCAGCCTCCAGTCACGTGTCTCACGTCAAAGAAGAAACATgaaaaatt
acgcatgcgtaatgAGGAAGCAGAAAAAATTCTTCACAAATGCGAGCAAT
TGAAAGAAGCATTAAAAGCCTTAGAACCGGTTTCTAGAAAAACGAAATTC
AAGAAACGTTTCGAGAGCAGACGTGATgctatgaaatattttttgagcac
TCGAAAGTCGGATTCGGAGCTAGATTTTGATATAAGCACAAGAGGTGAAT
TTATTGTCGAAGAATTACGTAATGATTTGAATAGTCAATATTGGTAAtca
aataagTATGAAAGTATGATtacaaatttttgttgtttatgCATTTATAA
AGGAgcttataatttatttttcagattcaaaaaaaagtttaaaagacaAA
TCCTGATAATAATTAATAATATGACTATGGCAACAATTACAGCAAATTTA
CCTGATAACCAAAACAATGATGCATTAATTGCTTATCAATTCTTGGatta
caataaaaatgaaaccaTCAAAGAAAATATCCTTATGGTAGATGAgatct
ttcaaaatataaaagacATTCGATCGTTACACAGTCAGAAAAAGACGTTG
AATCAAACAAAGAGATTTCTTTTACATAGATCACTTCAAAAACGACATGC
GAATCGTGGAACCAGGGAGGATGCAGATGATATTTGTAAACCAGTGACTA
ATAACAGGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAATGGCTGTC
CCCTTGATCGGTGATTATATCAAAGCACAAGAAGAATATATCCAAAATGC
TGTTAAAAATATAACAGATTATGTGGGTGATATCACAAAGGAATTATTAT
CGACCAAGATGGAATACAGTCTAAATCTAGCCTGTAAACAAGTTCAATAT
CAGCCTCCAGTCACGTGTCTCACGTCAAAGAAGAAACATgaaaaattacg
catgcgtaatgAGGAAGCAGAAAAAATTCTTCACAAATGCGAGCAATTGA
AAGAAGCATTAAAAGCCTTAGAACCGGTTTCTAGAAAAACGAAATTCAAG
AAACGTTTCGAGAGCAGACGTGATgctatgaaatattttttgagcacTCG
AAAGTCGGATTCGGAGCTAGATTTTGATATAAGCACAAGAGGTGAATTTA
TTGTCGAAGAATTACGTAATGATTTGAATAGTCAATATTGGTAAtcaaat
aagTATGAAAGTATGATtacaaatttttgttgtttatgCATTTATAAAGG
AgcttataatttatttttcagattcaaaaaaaagtttaaaagacaAATCC
TGATAATAATTAATAATATGACTATGGCAACAATTACAGCAAATTTACCT
GATAACCAAAACAATGATGCATTAATTGCTTATCAATTCTTGGattacaa
taaaaatgaaaccaTCAAAGAAAATATCCTTATGGTAGATGAgatctttc
aaaatataaaagacATTCGATCGTTACACAGTCAGAAAAAGACGTTGAAT
CAAACAAAGAGATTTCTTTTACATAGATCACTTCAAAAACGACATGCGAA
TCGTGGAACCAGGGAGGATGCAGATGATATTTGTAAACCAGTGACTAATA
ACAGGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAATGGCTGTCCCC
TTGATCGGTGATTATATCAAAGCACAAGAAGAATATATCCAAAATGCTGT
TAAAAATATAACAGATTATGTGGGTGATATCACAAAGGAATTATTATCGA
CCAAGATGGAATACAGTCTAAATCTAGCCTGTAAACAAGTTCAATATCAG
CCTCCAGTCACGTGTCTCACGTCAAAGAAGAAACATgaaaaattacgcat
gcgtaatgAGGAAGCAGAAAAAATTCTTCACAAATGCGAGCAATTGAAAG
AAGCATTAAAAGCCTTAGAACCGGTTTCTAGAAAAACGAAATTCAAGAAA
CGTTTCGAGAGCAGACGTGATgctatgaaatattttttgagcacTCGAAA
GTCGGATTCGGAGCTAGATTTTGATATAAGCACAAGAGGTGAATTTATTG
TCGAAGAATTACGTAATGATTTGAATAGTCAATATTGGTAAtcaaataag
TATGAAAGTATGATtacaaatttttgttgtttatgCATTTATAAAGGAgc
ttataatttatttttcagattcaaaaaaaagtttaaaagacaAATCCTGA
TAATAATTAATAATATGACTATGGCAACAATTACAGCAAATTTACCTGAT
AACCAAAACAATGATGCATTAATTGCTTATCAATTCTTGGattacaataa
aaatgaaaccaTCAAAGAAAATATCCTTATGGTAGATGAgatctttcaaa
atataaaagacATTCGATCGTTACACAGTCAGAAAAAGACGTTGAATCAA
ACAAAGAGATTTCTTTTACATAGATCACTTCAAAAACGACATGCGAATCG
TGGAACCAGGGAGGATGCAGATGATATTTGTAAACCAGTGACTAATAACA
GGCGCGAATGGCAGGACCGTAGAGATTTGTTGAAAATGGCTGTCCCCTTG
ATCGGTGATTATATCAAAGCACAAGAAGAATATATCCAAAATGCTGTTAA
AAATATAACAGATTATGTGGGTGATATCACAAAGGAATTATTATCGACCA
AGATGGAATACAGTCTAAATCTAGCCTGTAAACAAGTTCAATATCAGCCT
CCAGTCACGTGTCTCACGTCAAAGAAGAAACATgaaaaattacgcatgcg
taatgAGGAAGCAGAAAAAATTCTTCACAAATGCGAGCAATTGAAAGAAG
CATTAAAAGCCTTAGAACCGGTTTCTAGAAAAACGAAATTCAAGAAACGT
TTCGAGAGCAGACGTGATgctatgaaatattttttgagcacTCGAAAGTC
GGATTCGGAGCTAGATTTTGATATAAGCACAAGAGGTGAATTTATTGTCG
AAGAATTACGTAATGATTTGAATAGTCAATATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058226-exon-scaffold_309-1491911889:268078..268224 | TCONS_00058226-exon-scaffold_309-1491911889:268078..268224 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1510915933:268078..268224 | TCONS_00058226-exon-scaffold_309-1510915933:268078..268224 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1575043694:268078..268224 | TCONS_00058226-exon-scaffold_309-1575043694:268078..268224 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1491911889:269037..269259 | TCONS_00058226-exon-scaffold_309-1491911889:269037..269259 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1510915933:269037..269259 | TCONS_00058226-exon-scaffold_309-1510915933:269037..269259 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1575043694:269037..269259 | TCONS_00058226-exon-scaffold_309-1575043694:269037..269259 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1491911889:269751..269911 | TCONS_00058226-exon-scaffold_309-1491911889:269751..269911 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1510915933:269751..269911 | TCONS_00058226-exon-scaffold_309-1510915933:269751..269911 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1575043694:269751..269911 | TCONS_00058226-exon-scaffold_309-1575043694:269751..269911 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1491911889:270715..271123 | TCONS_00058226-exon-scaffold_309-1491911889:270715..271123 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1510915933:270715..271123 | TCONS_00058226-exon-scaffold_309-1510915933:270715..271123 | Clytia hemisphaerica | exon |
| TCONS_00058226-exon-scaffold_309-1575043694:270715..271123 | TCONS_00058226-exon-scaffold_309-1575043694:270715..271123 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:268078..271123 + |
Blast
The following BLAST results are available for this feature:
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