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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058229 ID=TCONS_00058229|Name=TCONS_00058229|organism=Clytia hemisphaerica|type=transcript|length=2218bpRun BLAST on NCBI protein sequence of TCONS_00058229-protein >TCONS_00058229-protein ID=TCONS_00058229-protein|Name=TCONS_00058229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp MKQLMRSWTILKLCSHNFIVDNAEKFFLLGRRVVPSSLFQRIMASTFYGHRun BLAST on NCBI transcript from alignment at scaffold_309:376440..388097+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058229 ID=TCONS_00058229|Name=TCONS_00058229|organism=Clytia hemisphaerica|type=transcript|length=11658bp|location=Sequence derived from alignment at scaffold_309:376440..388097+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:376440..388097+ >TCONS_00058229 ID=TCONS_00058229|Name=TCONS_00058229|organism=Clytia hemisphaerica|type=CDS|length=11286bp|location=Sequence derived from alignment at scaffold_309:376440..388097+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058229 vs. Swiss-Prot (Human)
Match: HYPDH (Hydroxyproline dehydrogenase OS=Homo sapiens GN=PRODH2 PE=1 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.720e-58 Identity = 132/429 (30.77%), Postives = 220/429 (51.28%), Query Frame = 2
Query: 626 FRQQTMKQLMRSWTILKLCSHNFIVDNAEKFFLLGRRVVPSSLFQRIMASTFYGHFTAGSDAQSSKPTIHALHEAGIKTMLMIPIENVFEDA-KEKEKAFADNFQSILGCVEMI-AELEPRGFS-----QLKITSLEDIKLYKELNRHLIDFETDHKEPG---DWDIGRVASLVKEKKFQELTFSDLSEADNKSFQTLLQRVDAICQAGQEKDIHVMIDAEQTYIQAALGYIILVMQAVYN---QNKCSVFNTYQCYRKDTLDKVKADQALGERLCFKIAGKFVRGAYMIEERALAKKNGTEDPINESYEKTGEMYHACVDYVLPKIKMREAF--FMFATHNEESVDYVTRQLTVHDIDIQEENYCFGQIYGMCDHVSFTLGRYGYRIFKSVPVGTIDDTLLYLTRRAMENKSVLWRTKKERLIILEEL 1867
F + +L R+ +L+LC+ +V + RR++ S L + ++ YG F AG A+ K + L ++ +L +P E + A K E + N ++L CV++ LEP + QLK+T+L +L KEL + + PG + R+A + Q L S L+ N+ + L R+ + Q + + + +++DAE T + AL ++ + +N + V+NTYQ KDT +++ D R K VRGAY+ +ERA+A+ +G EDP YE T + Y C++ +L + M A+HNEESV T+++ I + + CFGQ+ GMCDHVS LG+ GY ++KS+P G++++ + YL RRA EN+SVL ++E+ ++ +EL
Sbjct: 105 FHLKGTGELTRALLVLRLCAWPPLVTHGLLLQAWSRRLLGSRLSGAFLRASVYGQFVAGETAEEVKGCVQQLRTLSLRPLLAVPTEEEPDSAAKSGEAWYEGNLGAMLRCVDLSRGLLEPPSLAEASLMQLKVTALTSTRLCKELASWV-------RRPGASLELSPERLAEAMDSG--QNLQVSCLNAEQNQHLRASLSRLHRVAQYARAQHVRLLVDAEYTSLNPALSLLVAALAVRWNSPGEGGPWVWNTYQACLKDTFERLGRDAEAAHRAGLAFGVKLVRGAYLDKERAVAQLHGMEDPTQPDYEATSQSYSRCLELMLTHVARHGPMCHLMVASHNEESVRQATKRMWELGIPL-DGTVCFGQLLGMCDHVSLALGQAGYVVYKSIPYGSLEEVIPYLIRRAQENRSVLQGARREQELLSQEL 523 The following BLAST results are available for this feature:
BLAST of TCONS_00058229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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