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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058250 ID=TCONS_00058250|Name=TCONS_00058250|organism=Clytia hemisphaerica|type=transcript|length=384bp
ATTCTATCTGCCTTCGATAGCACTCTTGATGATAGTACAATCTTTTAGAA
TGGAGTTTTTAATCTATTTGATTGGGATATTTTCAATTGCAGTTTTTTCG
ACGAATGCTTCATCTTGCCCAACTCGTTCCAATGTTATCACATTCGATGA
CATCAAACACTCAGCGCGAGCGTCAAGAGAAGTCTACAAAGATGATAAAG
CAGTTATTGGCGCTACAATCCGCAAAACACCATACAAGATTGTAAGAGTT
TTTGAAGAAGAATTATTTGAGAAAGGAGAAGGAATTCGTGTGGCGATTGC
AGATCATGGAAACACAAGAATGATCATTTTCAGAGGAACCGACGGCCTCA
TTCAGCTTCTACGCGAGGGAGCAAGATGCAAGAG Run BLAST on NCBI transcript from alignment at scaffold_309:544563..550005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058250 ID=TCONS_00058250|Name=TCONS_00058250|organism=Clytia hemisphaerica|type=transcript|length=5443bp|location=Sequence derived from alignment at scaffold_309:544563..550005+ (Clytia hemisphaerica)
ATTCTATCTGCCTTCGATAGCACTCTTGATGATAGTACAATCTTTTAGAA
TGGAGTTTTTAATCTATTTGATTGGGATATTTTCAATTGCAGTTTTTTCG
ACGAATGCTTCATCTTGCCCGTAAGTATATAAAgtcaatgttttattttt
tgtctcagacattttttaaagaagaattcgctgaaaaattgttggaaaat
atatttattttagcCATAACTCCCCCCCCCTTCGTACAGACCCCGTGAGA
TTTAATttgccagtgggggtaaaaataccGAACCAAAACTCAacggggat
tgatatttccattttgctcatgactggggatttgaatCTCATATTGTTTT
TGAgcaagaaaattcagtgggatggaaaaaatagcacaataatttgcagt
gaggattggcttatctgattatttccagtggggacaaaaattggaggaca
ATTTTCCACCAggaacgatattttggtcaattttttccaatggaAAGGCT
TCCCTTTAGGGCTGTGAAAAGGGAGCTATAATTTGAAATGATGAAAACCA
GAAgcttatcatgtttttatttaaaaattggaTATTCGAACTTCATAAAA
AAGGTTACTCGGCAGACTGTAAAAATCTATCAACAAGATAAgatcttaaa
aaaattatatctagTTAATAAAATTAGAAAGTTAACTATATAGAGAGCGA
GTTGATTGGATTGGTTTGTATAGGGCCCGGGAGGGGGTACTAAGGCAAAA
TGGGTTAAGGGGATGCGCCGCTGgacagggtaccttttttaacctccacg
agtcccaggtagggttgcaaaaacaccaatatagaaaaatcagtccctcg
cagggtgcctatttttggaaaatttgcgggaaaagtagaaaaatttagaa
aattttggaatttcagtcccattcagggtcacttttttcgcaaatttccg
CAAACAAACCAGTTTAATATTTCCGTATGGCTGCTATAGATGAAGAAAAC
TCGTACCTAGAGCGACTTGCACcccttttttgttattttgttactGAGAA
CAAACAAAATTCTATCAAAGTTGGTATCGAAGGTACAGGGttcatttttc
aaccatttCTCAACCGTTACAATCAATCCCagaaatgggctattccagaa
aaaatttgcacccaactttcgaccctcggagaaaacaaagaaatattttg
tgaattttacgacccttaccgggataaatttgaccaattttgaccaaatt
tcgatctttctgggcgtaaaaagttgaaattttcctatttctcctaccct
tagtgggactgaaattagattttctaatttttcagactTTGGAAATccta
aaaaggtacccttaagggcaacacataccgtaccctccatttagCTAAca
ccacccccccccccgggatttgcacccctatgttgaggaggtacTATTTG
GAAAGGTGTCCTcctgaattttttaaaaaaatttcaggaccAGCATGGAC
TttcaacctcattttactgaaGGATTTTTACACTCGGCAAGGAGACACCC
tgagttttttattttccaaagcaccatagacctcctcaacatagggggta
cagactatttctggaatagcccaatctgttatattcatttttcaaagcCT
GTAATATTCATATTGAATTGGATCATAAATCTTATTAAGGATATCTTCTT
AGTCGATTCTCTAGATATTTATGAACTCTGCTCTAGGAACATACcagtta
aaaattttcaatgaaatttgatgTCCTAAATTTTTTAACGTTTTAGCCTA
AAAGTGTTCCTAAACATTCTAAAatcactattttgtgagtattttgatgt
gatttttgttttagagttcgTAAAGcttctcaaaatgttcttaatttttt
cttaatatCGTGGCCATCAAACCCTTTTGTTCCTATAAAGTATGTTCTTA
GTATAAAGCAAGATTTGATAGGATAATGGTAATTTTATCACTGTCCCTTC
AAACAAGCATCATAATCCTGCCCCATGATGAGCATCAGTTTAATGAAAGT
TTTTGTCTGGTATGTCAATCTGGGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
accctttgagagactttttcctaaattttggtccactttttccaaatttt
ggtttgattttcaccaaattttggtcaaaatttttggaaatcgtgatcct
ttgagagagaaatttttgattttcgtgattttgggaccctttcagagact
aacttttgaatttatacccctttgagagacttttgaggaatgagaaaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAATCT
GGGTATGCGTCcctcttttttataaattattgAGAGTCGTCTAAACCACA
TTGAGGTTTGCTGGATTCACGGTGTCCCCACTGCACACACAAATGACCTC
AAATCATGAAGAACAGTGAAGAAGATAGTGCTCAATAACAAGTAGAGCTA
AATCATTTCATGTATTTCTcttcaaatattaaaaacaaacattacACTGT
GTTTCACGCACAAGGCGATCATCAGATGtggataaaaatttttctaCGAA
CAAATTCTACTTGTAGAAATCGAAATACCTAGTCCCAAAGGGAATATCTA
AATAAAGCGttaaaatataaaacataatAGGATAGTGATTACATAATGTA
CAtgattaaaaagttgaaaaggtgCATATAAAACTATCAACTATCAACGA
CCCGGGCAAATTTTACATTGGTCTCACTGGCAACACGTTCAAGGATCGTT
GGAACACACACAAATACACACTGAGACACGAAGATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCGTCACTGACCCAATTCTC
TCCTGGGAAATTATTGATCAAGCTGCATCATACAAAAATGGAACAAAAAC
GTGCAACCTTTGTTTGGCAGAAAAATTTCACATTGGCTgtgtttagacca
gcctggcgtTTGTAAtagcttgcagtattcttttgaattctattgttccg
cgcaattgttcggtttgtcaaatgcctaatgatgccagcgtgttggcatt
acgttggcatttgaaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNacgttggcatttgaaatgccattttgagcaaaggaatccccttttc
tggcatttcaaatcaaacaaaggaaccaaaacaaagagaaaaaatgacat
ttttgaatttttatttgcacgttttttattcagttctttctatagattgt
aaaatttgcaaaatttgccatagcctagccctacggcaaaaagtttcagt
cttaatgaNCAAACTAGTGaacaaaaaaactgaattaGTCTCTAAATGCA
GGCATACAAACAGATTCATTCTAAAGAACTATAAATCAGTCCCTCCGGAC
AAATAGCTTTTATATGcaccttttcaactttttaatcaTGTACAATATGT
AATCACTATCCTattatgttttatattttaaCGCTTTATTTGGATATTCC
CTTTGGGACTAGGTATTTCGATTTCTACAAGTAGAATTTGTTCGtagaaa
aatttttatccaCATCTGATGATCGCCTTGTGCGTGAAACACAAATGACC
Tctatttttacacttttttctattgtttataggtgcgaaaaaaagactga
gatagttttagggtggtaaaacagaCGAAAAAATTACCACgcagcaattg
gcggctacggttgaaaaggtgtagtGCATTCCATGGCACGTTGTACCTTT
CTTAAAAACACCCGCATTTTTTCTCTTCGAGAAAATTTCTAATTAATCTC
ACTTTATGATCTTTAGAACTCGTTCCAATGTTATCACATTCGATGACATC
AAACACTCAGCGCGAGCGTCAAGAGAAGTCTACAAAGATGATAAAGCAGT
TATTGGCGCTACAATCCGCAAAACACCATACAAGATTGTAAGAGTTTTTG
AAGAAGAATTATTTGAGAAAGGAGAAGGAATTCGTGTGGCGATTGCAGAT
CATGGAAACACAAGAATGATCATTTTCAGAGGAACCGACGGGTAACATAC
TGATTTTTTCATGTTCTTAATGggttattccagaaaaaatttgtaccccc
tatgttgaagagatctttttttaagaagataaccccctggatttttttcc
aatttttcaggacccccttggatttttttctcccatttttttggaccacc
ctggattttcgacctcgttatacttaccaccctggattttcaaccccggg
gggggggtactagggttggcgaatgaggggtatgtgcggacgggacctcc
gaaaaccgacccttagagagattgatttttgctgaaaaggtgacccttag
agagactttgaaagatgaaaaaaccgACACATAGctatcatccatttttg
cctaagtacccctcccccgGGTTTTCAACCCAATTTTACTGACCACTCTG
GATTTTATCATCCACCTTGgagtttttattttccaaaccaCCCTGGAAGT
CACAtttcctcaacatagggggtacagactatttctggaataaccTGCAG
CCATAGTTCGGAGGCACACAACGGCTTCTCCCTGAATTCCTCAAGTTACC
CTTGATCATTGAGCATCAAGAGGCATCAACCTTACTGGAGATTGAACCTA
AGCCTTGCACTCCTTTAGCACCACAGAGCGCTGTTCTTGATAAGTTTAGA
AATTAAATTACAAAtataatcataaaatatgaAGGACGGGTGCAATTGAa
tttgttttagtttttaaaCACATCGGGTGCTACCAAATggttgcaaaaaa
aacaaagaaactgaACTACCAATCTTGAACTtgcttctttctttttcaag
ccAGCCTCATTCAGCTTCTACGCGAGGGAGCAAGATGCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058250-exon-scaffold_309-1491911889:544563..544682 | TCONS_00058250-exon-scaffold_309-1491911889:544563..544682 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1510915933:544563..544682 | TCONS_00058250-exon-scaffold_309-1510915933:544563..544682 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1575043694:544563..544682 | TCONS_00058250-exon-scaffold_309-1575043694:544563..544682 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1491911889:548929..549153 | TCONS_00058250-exon-scaffold_309-1491911889:548929..549153 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1510915933:548929..549153 | TCONS_00058250-exon-scaffold_309-1510915933:548929..549153 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1575043694:548929..549153 | TCONS_00058250-exon-scaffold_309-1575043694:548929..549153 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1491911889:549967..550005 | TCONS_00058250-exon-scaffold_309-1491911889:549967..550005 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1510915933:549967..550005 | TCONS_00058250-exon-scaffold_309-1510915933:549967..550005 | Clytia hemisphaerica | exon |
| TCONS_00058250-exon-scaffold_309-1575043694:549967..550005 | TCONS_00058250-exon-scaffold_309-1575043694:549967..550005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:544563..550005 + |
Blast
The following BLAST results are available for this feature:
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