TCONS_00058254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058254
Unique NameTCONS_00058254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058254 ID=TCONS_00058254|Name=TCONS_00058254|organism=Clytia hemisphaerica|type=transcript|length=1657bp
gtttttacaagctcttatttgatttggttggtcgttaagatgtaataaaa
gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg
accaattagtgaagtatcttgtaaaaactccagctcatcccaaataTTTT
GGTGAATTTCGTCTAAACTtgccaaattcaccaaaattggTTCTCGCCAA
AAAAGCTTCACTTTAATCTACTTTATTCTTTATTCAATTTTAGACTTTTA
TTGAAATTATCATTTATTTCCgaagttgaaaaatgaaaaacaaatagCAG
TGACAAAGAGATGTGTATTGTGTTTCTATGGCGAAGGAACGCCAGCCAAC
CCAAAGGGCGCATCAAATTTGTACTTNTTGTGTTTCTATGGCGACGGAAC
GCCAGCCAACCCAAAGGGCGCATCAAATTTGTACTTGCCGGTAACCGAGA
CGAATTTTTCCACCGACCGGCCAAAGATGCAGATTATTGGGACGAAAACT
CTAATGTTCTGGGCGGTCGTGATATGACGGAAGGGGTATCAGGCGGAACA
TGGATGGGTGTAAACAAACACGGAAAAATCGGATTCCTAACCAATATTCG
CGGCTCAACTTTCGGTGTGGACCCTGCTAAAGCAAACATGAAAGGGCGAG
GTGCTTTGGTGTCAGACTTTCTGTTAAGCGAGCTATCAGCAGAAGCATAC
ATCAAGCAGCTTGAGAATGAGCGGATGCAATACAAACCTTTCAACTTGGT
GTGTGGGGATGTCCTTAACGACCAATATTTCTACTCCAATAGTGTGGACC
AGCAACCTGCTGAACTGTTAACTCAAGATTCCATCTCTCTGAGTAACGGA
ACGTTAGGATGTGGATGGTTTAAAGTCGATCGAAGTCgggaaaagttcga
aaaactGGTCAATGAAAATGTGGACAGTGAACCTACCGCGTTGTTAGAGA
AATTACAAACTTTCCTTGAATGTACCGAGAGAAACTTTCCAGACGAGAAC
ATTAAGGTAGAGAATCCATTCAATGAAGTCCTTTCATCCATTTTCATCCC
AATGCACCCTCAACACAACTATGGCACAAGAACGAACACGATGATGGTTG
TAGAGGAGAATAATCGTGCAACATTCCTCGAACGCACAATGTGTCAAGCT
AACGACCCTACTTCACAATGGAAAAAGTCCCTCTTTCAATTCGATATGAT
GGTCAACTAATTTGAATCTCCTTCTCACTAAACAAATCGCTATTGCCGAC
GTAGTTGCCTATGTAAAATTGGCTTTTGCCGACTTAATGTACTATAGAAC
CCAGAATCTTTTGCCGACGCAAATGAATCTGAATTAGAAAGGCTCTCGCT
CTcacttttagaaaattttcactGATTTATTGATTGTtaggtattcatga
tatgcaccattgcaatgtcttccattccacccaatagctgattggttcaa
agtgacgtattgactgattttacgtcacttacaaccaatcagctgttggg
tccgtgatgtaatgtcagaagacattgcagtggtgcatatcatgaattta
taATCCTTTGTGTATCCGAGTTGGTTACTTTTGTtatcattttatatttt
gtatttatcaattaaaaagaacaaaatgaaataaattgaaTTTTCATGTA
ATTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_309:584073..589098+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058254 ID=TCONS_00058254|Name=TCONS_00058254|organism=Clytia hemisphaerica|type=transcript|length=5026bp|location=Sequence derived from alignment at scaffold_309:584073..589098+ (Clytia hemisphaerica)
gtttttacaagctcttatttgatttggttggtcgttaagatgtaataaaa
gaatcttattactttttctaaagaacgcgtcatctctatcactttaaatg
accaattagtgaagtatcttgtaaaaactccagctcatcccaaataTTTT
GGTGAATTTCGTCTAAACTtgccaaattcaccaaaattggTTCTCGCCAA
AAAAGCTTCACTTTAATCTACTTTATTCTTTATTCAATTTTAGACTTTTA
TTGAAATTATCATTTATTTCCgaagttgaaaaatgaaaaacaaatagCAG
TGACAAAGAGATGTGTATTGTGTTTCTATGGCGAAGGAACGCCAGCCAAC
CCAAAGGGCGCATCAAATTTGTACTTNTTGTGTTTCTATGGCGACGGAAC
GCCAGCCAACCCAAAGGGCGCATCAAATTTGTACTTGCCGGTAACCGAGA
CGAATTTTTCCACCGACCGGCCAAAGATGCAGATTATTGGGACGAAAACT
CTAATGTTCTGGGCGGTAAATTAGTGATGTTTACTTCATTTAAAGATAGA
CTCCAGTTGGCTTGAANTGGTAAGTTGGTAATATGTTTACTTCACTTGAA
CACCGACTTCAGTTGAGTTGAAACTGGAAAGTTAgttaatttgatttatt
ttgagTCATTAATATACCAAAGTCTGTAAGCAGTTTTGTTGAATCTCGAC
ATCCTTCGTCtgattccgacacccttctttaaaccTTGGGATCATAAAAG
GTTTGAGTCGCTATTCGCTTATAAACAACGGTCAAAGAGGAAAACATCTT
TTTatcaatcagtgattccaaaccttttttttttatcCTGTCTCTAATAA
GGttgtcggaattagatgagggatgtcgacattagaccaatttGTGGTAC
TCTTTATTTTACTATTATAACGTTTTTTTCACAGGTCGTGATATGACGGA
AGGGGTATCAGGCGGAACATGGATGGGTGTAAACAAACACGGAAAAATCG
GATTCCTAACCAATATTCGCGGCTCAACTTTCGGTGTGGACCCTGCTAAA
GCAAACATGAAAGGTCTAATATTGGTTCATAACGAATAGTTTTCAACATC
TACACCTTTTTTTTTagaagaacatccaaaatttttgaagccttgggatg
ttcttagcttttccggtttcaagcctaaaaatgttcttaacatgttctta
ttttcagcatattttgagtatttttatccatttcCCCTGAGaaaacaggt
gttttagagcccacgatgccttaaatattcttaacttgttcttaagattt
tggccaccgaagccttatgttcttatatagtttcttataaaaaaacgtgt
agttttcAAAATCTTGCTTATTAATTAGAGAGTCTAAAAATTAGTGTGAC
ATCAAATAATATGGAATCAGATTAACGCCTTCTTTACTTCCCTTTGTGTT
TTAGGGCGAGGTGCTTTGGTGTCAGACTTTCTGTTAAGCGAGCTATCAGC
AGAAGCATACATCAAGCAGCTTGAGAATGAGCGGATGCAATACAAACCTT
TCAACTTGGTGTGTGGGGATGTCCTTAACGACCAATATTTCTACTCCAAT
AGTGTGGACCAGCAACCTGCTGAACTGTTAACTCAAGGTACACTTTAAGT
CCTCGTAGCTTTCTAGCATTAGCGTGGTGTCAGAGGGTAGTGCTCCCCCA
TGTCAGAGGTTAGTACTTTCCCATGTCAGAGGGTAGTACTCCCCATGTCA
GTGGGTAGTGCTCCCCCGTGTCAGTGGGTAGTGCTCCCCCTATGTTAGGG
GGTATTGCTCCCCCATGACAGGTGGTATTGCTCCCCCATGACAGGTGGTA
TTGCTCCCCATGTCAGAGGGTATGGATCCTCATATTAGGGGGTATGGCTC
CCCTATGACAGGGGATAAGTGCTCCCCCAGTGTCTATTTTTAGGGGGTCA
CCAAAAGACAAGGACGTCAAAATTCTGCTCAGGTCATTTATTCGGCgctc
atttttatttaaaattcacTACATAGAGAATAGATTTTTAGCCAAAGAGA
GGAAAGAAATACCAAAGAAAAGATTCGTCCCGCTTCGTTCATGTATCCTA
TATCACTCCCCTTTTTATCGCGCCCTTCGGGGTGCAATAATGGCAATTTC
TTCAGATTTCTTCAATTAGCTTTTCCAGCTTTGGTCACCTTGCTGAAGCC
AGATTATTCTTTGATTTTATCGAGACTTTTTTCTGCTAGtcaaataaaat
tgacgttGGTCAATCATACACATGAAACAATGATAGCTAGGTAAAACTTT
TTATATTCAACATTGCTGTTAAAACCAGGCCCGATCAAttgaacttgtcg
aaccaatcgaacaatcgaactcaTATTGCTTCAAAGATTGCGAATGTTCG
ATAAGATTCGATTAGTTTTTTTGATAATTGGTTCGatcgttcgattggtt
cgacaagttcggtTTATCGGGTCTGGTTTAAACTCGTGAAGTTTTTATTC
CATTACAGATTCCATCTCTCTGAGTAACGGAACGTTAGGATGTGGATGGT
TTAAAGTCGATCGAAGTCgggaaaagttcgaaaaactGGTCAATGAAAAT
GTGGACAGTGAACCTACCGCGTTGTTAGAGAAATTACAAACTTTCCTTGA
ATGTACCGAGAGGTTTGAATTTCATATCtacgtacatgtttttttttcat
aaagaacatttgaaatttttgaagcctcaatttttttagttttattaagc
ctaaaatgttcttaacttgttcttattttcactattgtgtgaatattttt
gcccatttttctaagaaatcgggtgttttagattgtgtaaagccttaaaa
tgttcttaacttgttcttgatattttgttcatcgaagccttatgttctta
tctagttttttcttatgaaaaaacgtgtaggctGTTTAGCAATTTGCTTT
TTAAATGAACTAATAGAGGGAATGTAAAATTTACTCCTAATCCTGAGTTA
CAAGTAATTCACAACCACCAGACGAAGAGCGATcttagtgcagtggtaga
gcatccggctaagGTGCGCAAGATCGTGGGTTCATCCTCGGCCAGCTCAT
ATCAAAGACTACGTACTTAGTACGAAAATGTTACTTAATTAAAGTCTCAT
TAATGCCTCtcagcttgatgctcagcaattaattAAGAGTAGAATCAAGT
GTAGGTGGAGCAATCCAGAGAGAAAAGGTAGTGCCCTGCCCTGCCTTCGG
ATGGATAGAATATCGAGAGCCTTTGGATCGCCTCTGACTTTttggtcgca
gacttacttagaCAAAGAGTAGAGTTAgggatacacgctttttttaataa
gaatacactttgtAAGAATGTCcctgatgaaaatggccaaaaaattaaga
acatggtaagagtatcaccatcatggaatttagcaactgaacctaagaat
gccattttttaagcattttcacCTGTAATACATCAGTTACGCTCAGTATT
CTCCAGACGTATAATTACATGTTAAATCTAGGTTAATCATTTTTTATTAT
AGAAACTTTCCAGACGAGAACATTAAGGTAGAGAATCCATTCAATGAAGT
CCTTTCATCCATTTTCATCCCAATGCACCCTCAACACAACTATGGCACAA
GGTGATGAACTTTTCATTCAACTCtctcaaaaatgatttgataATATGTG
AAATCGGCTGTTCAGTTAATAGCGCCCTCAGAAAAATATGATGTTAGATA
ATGGATTTGTTAGGCGTATCTCACGATGCTTGAAGAAGATCATCAACTTT
TTTCTGTGCCCAGAGGTGGGATTTTCCAGCGAATATTTACGCTTGAAATC
AGTCAATTTTCGGCTCCCCTTGCTTAAAATACAGTAGCTCATATCATTTT
TGATTAAGATACTAAAAtgtttttccccaaattttaaACTTCATTCCctc
aaagaattgaaaaatattgcttGCCGTCAAAGGGAAGTATTTGTTCAAAT
TTGTCTTCCACATCATACCATAgatccaacagctgattgtTGTGGAAGTG
acataaaatcagtcaatatgtcacttacaaccaatcagctgttgggtccg
tgatataatgttagaagacattgcaatggtgccatatcatgaatagaagt
AGCCTATAGTAGACGTCACCAGTGTTTTTTCTATGCAATCAGCGTCTATT
CTACTTTGTGACTTTTTCNTCGGGCTCTAAATATTCGAtcttttgacgtc
actttaatctttcgaagctcctgcagtagcgaaaaaatcaaatttgagtc
aaagcacttgaaaggcttctatttttcgaaaatcatcaaagtggaactca
ctaaaaaacggaatgaaaaaacccggtttttggtgaggtgctcaCTAGAA
TAGATGGAGATTTGTTCAaatgttctttctttttttgtcttGTGTACAGA
ACGAACACGATGATGGTTGTAGAGGAGAATAATCGTGCAACATTCCTCGA
ACGCACAATGTGTCAAGCTAACGACCCTACTTCACAATGGAAAAAGTCCC
TCTTTCAATTCGATATGATGGTCAACTAATTTGAATCTCCTTCTCACTAA
ACAAATCGCTATTGCCGACGTAGTTGCCTATGTAAAATTGGCTTTTGCCG
ACTTAATGTACTATAGAACCCAGAATCTTTTGCCGACGCAAATGAATCTG
AATTAGAAAGGCTCTCGCTCTcacttttagaaaattttcactGATTTATT
GATTGTtaggtattcatgatatgcaccattgcaatgtcttccattccacc
caatagctgattggttcaaagtgacgtattgactgattttacgtcactta
caaccaatcagctgttgggtccgtgatgtaatgtcagaagacattgcagt
ggtgcatatcatgaatttataATCCTTTGTGTATCCGAGTTGGTTACTTT
TGTtatcattttatattttgtatttatcaattaaaaagaacaaaatgaaa
taaattgaaTTTTCATGTAATTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036699XLOC_036699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058254-exon-scaffold_309-1491911889:584073..584587TCONS_00058254-exon-scaffold_309-1491911889:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:584073..584587TCONS_00058254-exon-scaffold_309-1510915933:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:584073..584587TCONS_00058254-exon-scaffold_309-1575043694:584073..584587Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:585007..585135TCONS_00058254-exon-scaffold_309-1491911889:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:585007..585135TCONS_00058254-exon-scaffold_309-1510915933:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:585007..585135TCONS_00058254-exon-scaffold_309-1575043694:585007..585135Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:585527..585709TCONS_00058254-exon-scaffold_309-1491911889:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:585527..585709TCONS_00058254-exon-scaffold_309-1510915933:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:585527..585709TCONS_00058254-exon-scaffold_309-1575043694:585527..585709Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:586581..586734TCONS_00058254-exon-scaffold_309-1491911889:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:586581..586734TCONS_00058254-exon-scaffold_309-1510915933:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:586581..586734TCONS_00058254-exon-scaffold_309-1575043694:586581..586734Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:587625..587723TCONS_00058254-exon-scaffold_309-1491911889:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:587625..587723TCONS_00058254-exon-scaffold_309-1510915933:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:587625..587723TCONS_00058254-exon-scaffold_309-1575043694:587625..587723Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1491911889:588522..589098TCONS_00058254-exon-scaffold_309-1491911889:588522..589098Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1510915933:588522..589098TCONS_00058254-exon-scaffold_309-1510915933:588522..589098Clytia hemisphaericaexon
TCONS_00058254-exon-scaffold_309-1575043694:588522..589098TCONS_00058254-exon-scaffold_309-1575043694:588522..589098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:584073..589098 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.4095	27.9858	13.6551	13.4976	8.94615	7.32394	12.7717	13.899	13.8227	14.7976	12.1516	15.765	16.5696	17.284	19.4818	20.6345	16.7545	20.2498	8.83739	10.7253	12.0654	11.8325	13.5161	11.3815	28.1193	25.5197	13.0588	13.6565	14.379	13.6752
Blast
[Close]
BLAST of TCONS_00058254 vs. Swiss-Prot (Human)
Match: TNG2 (Transport and Golgi organization protein 2 homolog OS=Homo sapiens GN=TANGO2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.683e-35
Identity = 84/268 (31.34%), Postives = 132/268 (49.25%), Query Frame = 2 
Query:  413 KGRIKFVLAGNRDEFFHRPAKDADYWDENSNVLGGRDMTEGVSGGTWMGVNKHGKIGFLTNIRGSTFGVDPAKANMKGRGALVSDFLLSELSAEAYIKQLENERMQYKPFNLVCGDVLNDQ----YFYSNSVDQQPAELLTQDSISLSNGTLGCGWFKVDRSREKFEKLVNENVDSEPTALLEKLQTFLECTERNFPDENIKVENP--FNEVLSSIFIPMHPQHNYGTRTNTMMVVEENNRATFLERTMCQANDPTSQWKKSLFQFDM 1198
            K   + +LA NRDEF+ RP+K AD+W  N+ +L G DM EG  GGTW+G++  GK+  LTN               +GRG LV+ FL +++ + +Y+K++  E   Y  FNL+  D+   +     +Y N  +  P  +LT  +  LSN  L   W K+   ++ F + V  +       L+  L   L   E   PD  I+ +       +LS           YGTRTNT+++V+ +   TF ER+M   +   S W+   ++F +
Sbjct:   15 KNAYRLILAANRDEFYSRPSKLADFWGNNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPQL-----DWQARGRGELVTHFLTTDVDSLSYLKKVSMEGHLYNGFNLIAADLSTAKGDVICYYGNRGEPDPI-VLTPGTYGLSNALLETPWRKLCFGKQLFLEAVERSQALPKDVLIASLLDVLNNEEAQLPDPAIEDQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVDADGHVTFTERSMMDKD--LSHWETRTYEFTL 274
The following BLAST results are available for this feature:
BLAST of TCONS_00058254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TNG23.683e-3531.34Transport and Golgi organization protein 2 homolog... [more]
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