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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058275 ID=TCONS_00058275|Name=TCONS_00058275|organism=Clytia hemisphaerica|type=transcript|length=2961bpRun BLAST on NCBI protein sequence of TCONS_00058275-protein >TCONS_00058275-protein ID=TCONS_00058275-protein|Name=TCONS_00058275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=742bp MSQSKAKVTNMASKGRGSDDSTSIYRIPPYYYIHILDQNTNVTSVEVGPKRun BLAST on NCBI transcript from alignment at scaffold_309:272442..284326- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058275 ID=TCONS_00058275|Name=TCONS_00058275|organism=Clytia hemisphaerica|type=transcript|length=11885bp|location=Sequence derived from alignment at scaffold_309:272442..284326- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:272442..284326- >TCONS_00058275 ID=TCONS_00058275|Name=TCONS_00058275|organism=Clytia hemisphaerica|type=CDS|length=26748bp|location=Sequence derived from alignment at scaffold_309:272442..284326- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058275 vs. Swiss-Prot (Human)
Match: MVP (Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4) HSP 1 Score: 889.026 bits (2296), Expect = 0.000e+0 Identity = 438/684 (64.04%), Postives = 543/684 (79.39%), Query Frame = 1
Query: 352 LDQNTNVTSVEVGPKTYIRQDNEKVVFGPQQMITIPPRHYCVIENPVSIDAEGKVIFDENGQAKLKHADLEIRLAQDPFPLYPGETLKKPKTPLQVVPANSALRLRALLDFTSDAKKDYVAGDEWLFEGPGTYIPRKEVEVVETIRAVIIKPNQAIKLRARKETLDRESNPRVTGEEWVVKKTGAYLPGAYEEVVEIVDAYVLTDKVALHMRATRTFNDEKLKKTRKNGEEWLISLEDTETHIPNVYEEVVDVVNITTLNNRQYCIICDPVGADGKPQLGQKKLVKGEKSFFLQPGERFEKGTQNVYVLGEDEGLILKTTEEFMDGKEK----RAPGDRWMIRGPREYXXXXXXXXTSHRKAIPLDANEGVYVRNIKTGQVRAVVGQTYMLDQDEELWAKELPPVVEDLLAQGKDPLADRSERGSKGASK---ARDKTKVVVFRVPHNAAVQIYDYKDKKARVNFGPDLVMLLPDEQFTVLSISGGKPKRPNVIKALCLLLGPDFCTDIVVVETADHARLSLQLSYNWHFA----HEAKDGARLFSVPDFIGDACKAIASRIRGAVASVKFDDFHKNSAKIIRASVFGLDEKN----------KVREKFTFPANGLNITSVDIQSVEPVDQRTRDALQKSVQLAIEITTASQEASAKHEADRLEQEARGRLERQKIQDEPHLKK 2340
LDQN+NV+ VEVGPKTYIRQDNE+V+F P +M+T+PPRHYC + NPVS DA+G V+FD GQ +L+HADLEIRLAQDPFPLYPGE L+K TPLQVV N+AL L+ALLDF VAGDEWLFEGPGTYIPRKEVEVVE I+A II+ NQA++LRARKE DR+ RVTGEEW+V GAYLP +EEV+++VDA +LT+K ALH+RA R F D + +R+ GEEWL++++DTE H+P+V+EEV+ VV ITTL YC+I DPVG DGK QLGQK++VKGEKSFFLQPGE+ E+G Q+VYVL E +GL+L+ + +G+++ GD W+IRGP EYVP +VEV R+AIPLD NEG+YV+++KTG+VRAV+G TYML QDE LW KELPP VE+LL +G+DPLADR E+ + + + R+KT+VV +RVPHNAAVQ+YDY++K+ARV FGP+LV L P+EQFTVLS+S G+PKRP+ +ALCLLLGPDF TD++ +ETADHARL LQL+YNWHF + ++ A+LFSVPDF+GDACKAIASR+RGAVASV FDDFHKNSA+IIR +VFG + + R++ FP NGL ++SVD+QSVEPVDQRTRDALQ+SVQLAIEITT SQEA+AKHEA RLEQEARGRLERQKI D+ +K
Sbjct: 19 LDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFR-GVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701 HSP 2 Score: 151.754 bits (382), Expect = 2.402e-37 Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = 3
Query: 2331 SEKARRELLQLQAESAAVESTGXXXXXXXXXXXXXXXXXXXXVQQAQLKAEASNIEAASELKRLTAARDAETKYIKDQNELEINKTQELAHIESAKFKHMVDAIGPNTIQSIATAGPEMQVKLLKSLGLQSTMITDGKSPINLFNTAEGLIS 2786
+EKAR+ELL+L+A S AVESTG AKAEA+SRAEAARIEGE +V QA+LKA+A IE +EL+R+ R+ E Y + Q ELE++K Q+LA +E KFK M +AIGP+TI+ +A AGPEMQVKLL+SLGL+ST+ITDG +PINLFNTA GL+
Sbjct: 699 AEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLG 850 The following BLAST results are available for this feature:
BLAST of TCONS_00058275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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