TCONS_00058280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058280
Unique NameTCONS_00058280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058280 ID=TCONS_00058280|Name=TCONS_00058280|organism=Clytia hemisphaerica|type=transcript|length=488bp
AGACATACCTTGAAAAACTAAACCAGAACAAGCGCGATTTCAGAGATTTT
GTCATCAGTAAAATCATTGAGAGCACACTCGGTCATATACGGTATCACTT
CCTCGATTCAAATGGTCCGAAATATGGTGCTGTGACTGAAGAGCACTCCA
TTGCTGTCAGATATTTCTGTTATCCATTCAAAGATGCTAATCTCACGGCT
GACGAAGAACTCGCGGAATCTCCTTCGAATGCTAATCTCATAATGGCGCA
CAACGGCTGGGTTGCTGGAGGTGATATCTTGAAAGGTTTCGTGGGTGAAG
ATTCCCATGTATTTCTATGCAGAGAACTGTTTGCTTGGGGTGATTCCATT
AAGCTGCGGTATGGTGATTCCCCGGACGACGTTCCGTTCCTTTGGGAATA
CATGAAACAGTACACTGAACAGATGGCAAGAATGTTCCACGGTGTTCGAT
TGGATAATTGTCACAATACACCTTTACACGTTGCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00058280-protein

>TCONS_00058280-protein ID=TCONS_00058280-protein|Name=TCONS_00058280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
TYLEKLNQNKRDFRDFVISKIIESTLGHIRYHFLDSNGPKYGAVTEEHSI
AVRYFCYPFKDANLTADEELAESPSNANLIMAHNGWVAGGDILKGFVGED
SHVFLCRELFAWGDSIKLRYGDSPDDVPFLWEYMKQYTEQMARMFHGVRL
DNCHNTPLHVAE
Run BLAST on NCBI

transcript from alignment at scaffold_309:310285..312859-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058280 ID=TCONS_00058280|Name=TCONS_00058280|organism=Clytia hemisphaerica|type=transcript|length=2575bp|location=Sequence derived from alignment at scaffold_309:310285..312859- (Clytia hemisphaerica)
AGACATACCTTGAAAAACTAAACCAGAACAAGCGCGATTTCAGAGATTTT
GTCATCAGTAAAATCATTGAGAGCACACTCGGTCATATACGGTATCACTT
CCTCGATTCAAATGGTCCGAAATATGGTGCTGTGACTGAAGAGCACTCCA
TTGCTGTCAGGTGAGTGTCCATTTATTTTTACTTTATTTGCTCGTTTTCC
TGATACCTAAAACTACAGTTGAGGCATAGTGTCAGCCCCCCTGCTGGTTG
GGAGGGGGGTTACACCCTAAATTTTTTCCAAAAAAGGAGGGGGCTGGAAG
TACACCAATTTTTTGGGGGGACCTATGTACTTGGGGGGACCTAAAATCTC
ATCACTTAACGTGGGGGCTAAAATAATTCAGCTTAATAGTTGGCTTCAAT
TACTCCAATTCTGAAAAATTTTCGAAATATTTTATCTTAAACTTAGAACT
GAACGCAATTTATATTGGAAAACCCTTTTTTACTGGATCAATTTTTTGAA
AGTGTCAAAAGTCCTGGGGGCTACTAAAAAAATCATAAATCTTTGGGGGG
ACTTGAAACTCAGGGGGGACCTAATTTTTGCCTTGGACCTAAACCCAGGC
TGACGCTATGTGAGCCACTTTAACTCGAACCTTTATAACTCAAGCATCCC
CTGAAAAAAATTTCTCGTCCCTTCAGTTAATGTTTTTTAAACCTTACTCC
ATATCTCGAAACAAATTTCTGTTCACCGTACGTTTTCGAGTTATGGAGAG
TATACTGTATTACTGCGTAACGCCCTTAATACCTATAACTTCGAGAAGGT
ACTTCTAATCAATTAAGATGAGACTTTCAATAACCCAGCTGGCACACGAC
GTTGTTTTAACGTTTATATAACGTTCACAACGTCCATATAACGTTAGATG
AACGTTAAAACAACGTCGTGTGCCAGTTGGGAATGTGGATACAGTGGAGT
CTCCATTACTCGAGCCTCTATAACTCGAATGTTTTCACCGTCACAAACTT
GAACATTTTTCTAGTTCCCTTCAGTTAACAACGCCCTTTAAACCAGTCTG
CATAATGGAGACTCCGCTGTAAAGGCAATTCCATTCAGGCGAGTAAAAAT
AACAGCAAGAATAAAAAATAGTTATCAGAGTGTTGGTCGTACCCAATAGC
CCTAATTACATTTTATTTGTCAACTGAAAAGAGCCTCGGCCTCCTGCAGG
CTAGTTAAAAAACAAGGACACTACTACGTCTCGTAGACCTTTACTGAGTT
CTGTATTTACCTATTTGCAGATATTTCTGTTATCCATTCAAAGATGCTAA
TCTCACGGCTGACGAAGAACTCGCGGAATCTCCTTCGAATGCTAATCTCA
TAATGGCGCACAACGGCTGGGTTGCTGGAGGTGATATCTTGAAAGGTTTC
GTGGGTGAAGATTCCCATGTATTTCTATGCAGAGAACTGTTTGCTTGGGG
TGATTCCATTAAGCTGCGGTATGGTGATTCCCCGGACGACGTTCCGTTCC
TTTGGGAATACATGAAACAGTACACTGAACAGATGGCAAGGTACGATTTG
TTCGTTCAGTTTTAATACCTCTTTCGTCTTAGTGTAAAATTCTTCATAAT
TCACCAAAATTTCAAAAATTTATGCTAATTTGCTGTTTAAAATCCATTTT
CCGTCTCAGATTTAAAACCTTGCTTTGACCGCTGTTCTTTTTTTCCCCTG
GTACTATTTTACAGAAGAACTAATAATTTTCATGGCAGCAATTTCGGGTT
CTCTGAATTTTGTTCACGATCGAACAAATTTGAACGAAAACTGCGATCGA
ACCAATGGAATGTAATCGAACGCAATCAAATAATTGCTATTCGATTGACT
CCTTCAGAACTTTAGCATGAAGAGTGAGTGCATTAGTACCACACGAAGGC
AAATAAATCAATCGAATGTACTTTATTTGTTCGGAAATCGAATTGCAATT
ACCTTATCGGGGAAAAAATGTCGGAGTTATTTTTAGTCGGGGTTTTTTTT
TCGATGGGGAAAAATTTTGTCACCTAGAGGTATTTTCGTCACTTTCCCCC
GACCAGAATTTCAAGTTCTTCGCTTTTCCCTGACGAAATTTACAATTTAG
TCACTTTCACCCAACTAAATTGTCCAAATGAAATGGCTTCCTTCACTAGC
TCGAAAAGAAATCTTGTAATTCGACGTTTAAAACACTAATTTCGGTTAAT
AAAGGTGTAAAAAATTTAGACTTTAATTTTGGTTGGGGTTTGAAAAATTG
GGTAAAAGTTTTGGTCGGGCGATAAAATATCGGGGAAAAGATTCGTTGGG
GGAAAATTTCGTCACCTCCTCAAAATTTCGTCACTTTCCCCCGACATTTT
TTTTCCCGATAAGGTATTCGATTGCGTTCGATTGTGTTCAATTGATTCGA
CGTTTGATTCGTTCGATTGATACCATTTGGCTTTAACAATGAATGAAAAA
TGTTAAACAATTTTCAGCTTTAAACAGCCATTGGTAAACCTTTTCCACTT
GTTGTCTATAATTTCAGAATGTTCCACGGTGTTCGATTGGATAATTGTCA
CAATACACCTTTACACGTTGCAGAG

Coding sequence (CDS) from alignment at scaffold_309:310285..312859-

>TCONS_00058280 ID=TCONS_00058280|Name=TCONS_00058280|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_309:310285..312859- (Clytia hemisphaerica)
AATGTTCCACGGTGTTCGATTGGATAATTGTCACAATACACCTTTACACG
TTGCAGAGATATTTCTGTTATCCATTCAAAGATGCTAATCTCACGGCTGA
CGAAGAACTCGCGGAATCTCCTTCGAATGCTAATCTCATAATGGCGCACA
ACGGCTGGGTTGCTGGAGGTGATATCTTGAAAGGTTTCGTGGGTGAAGAT
TCCCATGTATTTCTATGCAGAGAACTGTTTGCTTGGGGTGATTCCATTAA
GCTGCGGTATGGTGATTCCCCGGACGACGTTCCGTTCCTTTGGGAATACA
TGAAACAGTACACTGAACAGATGGCAAGACATACCTTGAAAAACTAAACC
AGAACAAGCGCGATTTCAGAGATTTTGTCATCAGTAAAATCATTGAGAGC
ACACTCGGTCATATACGGTATCACTTCCTCGATTCAAATGGTCCGAAATA
TGGTGCTGTGACTGAAGAGCACTCCATTGCTGTCAGAATGTTCCACGGTG
TTCGATTGGATAATTGTCACAATACACCTTTACACGTTGCAGAGATATTT
CTGTTATCCATTCAAAGATGCTAATCTCACGGCTGACGAAGAACTCGCGG
AATCTCCTTCGAATGCTAATCTCATAATGGCGCACAACGGCTGGGTTGCT
GGAGGTGATATCTTGAAAGGTTTCGTGGGTGAAGATTCCCATGTATTTCT
ATGCAGAGAACTGTTTGCTTGGGGTGATTCCATTAAGCTGCGGTATGGTG
ATTCCCCGGACGACGTTCCGTTCCTTTGGGAATACATGAAACAGTACACT
GAACAGATGGCAAGACATACCTTGAAAAACTAAACCAGAACAAGCGCGAT
TTCAGAGATTTTGTCATCAGTAAAATCATTGAGAGCACACTCGGTCATAT
ACGGTATCACTTCCTCGATTCAAATGGTCCGAAATATGGTGCTGTGACTG
AAGAGCACTCCATTGCTGTCAGAATGTTCCACGGTGTTCGATTGGATAAT
TGTCACAATACACCTTTACACGTTGCAGAGATATTTCTGTTATCCATTCA
AAGATGCTAATCTCACGGCTGACGAAGAACTCGCGGAATCTCCTTCGAAT
GCTAATCTCATAATGGCGCACAACGGCTGGGTTGCTGGAGGTGATATCTT
GAAAGGTTTCGTGGGTGAAGATTCCCATGTATTTCTATGCAGAGAACTGT
TTGCTTGGGGTGATTCCATTAAGCTGCGGTATGGTGATTCCCCGGACGAC
GTTCCGTTCCTTTGGGAATACATGAAACAGTACACTGAACAGATGGCAAG
ACATACCTTGAAAAACTAAACCAGAACAAGCGCGATTTCAGAGATTTTGT
CATCAGTAAAATCATTGAGAGCACACTCGGTCATATACGGTATCACTTCC
TCGATTCAAATGGTCCGAAATATGGTGCTGTGACTGAAGAGCACTCCATT
GCTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036712XLOC_036712Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058280-proteinTCONS_00058280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058280-exon-scaffold_309-1575043694:312700..312859TCONS_00058280-exon-scaffold_309-1575043694:312700..312859Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1575043694:311320..311589TCONS_00058280-exon-scaffold_309-1575043694:311320..311589Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1575043694:310285..310342TCONS_00058280-exon-scaffold_309-1575043694:310285..310342Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1510915933:312700..312859TCONS_00058280-exon-scaffold_309-1510915933:312700..312859Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1510915933:311320..311589TCONS_00058280-exon-scaffold_309-1510915933:311320..311589Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1510915933:310285..310342TCONS_00058280-exon-scaffold_309-1510915933:310285..310342Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1491911889:312700..312859TCONS_00058280-exon-scaffold_309-1491911889:312700..312859Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1491911889:311320..311589TCONS_00058280-exon-scaffold_309-1491911889:311320..311589Clytia hemisphaericaexon
TCONS_00058280-exon-scaffold_309-1491911889:310285..310342TCONS_00058280-exon-scaffold_309-1491911889:310285..310342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:310285..312859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48518	3.96804	38.586	37.1869	41.3274	36.1807	24.8497	29.6922	14.0374	20.0422	19.3246	10.3319	14.2078	16.248	8.80911	8.91111	21.0009	17.4159	8.78633	12.5891	14.1388	14.0327	7.28998	9.94147	26.4861	29.365	5.92831	9.49028	8.32715	4.17012
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032792AGL_glucanoTrfase
Blast
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BLAST of TCONS_00058280 vs. Swiss-Prot (Human)
Match: GDE (Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 1.797e-48
Identity = 76/160 (47.50%), Postives = 105/160 (65.62%), Query Frame = 3 
Query:    9 LEKLNQNKRDFRDFVISKIIESTLGHIRYHFLDSNGPKYGAVTEEHSIAVRYFCYPFKDANLTADEELAESPSNANLIMAHNGWVAGGDILKGFVGEDSHVFLCRELFAWGDSIKLRYGDSPDDVPFLWEYMKQYTEQMARMFHGVRLDNCHNTPLHVAE 488
            +E+LN  K    ++   + +   LG++ Y  L  +GPK G VT +H +  RYF +PF++ + + +E +   P+ A  +MAHNGWV G D L+ F    S V+L REL  WGDS+KLRYG+ P+D P+LW +MK+YTE  A  F GVRLDNCH+TPLHVAE
Sbjct:  378 MEELNSEKHRLINYHQEQAVNCLLGNVFYERLAGHGPKLGPVTRKHPLVTRYFTFPFEEIDFSMEESMIHLPNKACFLMAHNGWVMGDDPLRNFAEPGSEVYLRRELICWGDSVKLRYGNKPEDCPYLWAHMKKYTEITATYFQGVRLDNCHSTPLHVAE 537
The following BLAST results are available for this feature:
BLAST of TCONS_00058280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GDE1.797e-4847.50Glycogen debranching enzyme OS=Homo sapiens GN=AGL... [more]
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