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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058311 ID=TCONS_00058311|Name=TCONS_00058311|organism=Clytia hemisphaerica|type=transcript|length=1988bpRun BLAST on NCBI protein sequence of TCONS_00058311-protein >TCONS_00058311-protein ID=TCONS_00058311-protein|Name=TCONS_00058311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp MVGSSSHVVDERRLRPIYDALDNLNNKQAIKLADALLKKQKECACAKALKRun BLAST on NCBI transcript from alignment at scaffold_309:734219..781504- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058311 ID=TCONS_00058311|Name=TCONS_00058311|organism=Clytia hemisphaerica|type=transcript|length=47286bp|location=Sequence derived from alignment at scaffold_309:734219..781504- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:734219..781504- >TCONS_00058311 ID=TCONS_00058311|Name=TCONS_00058311|organism=Clytia hemisphaerica|type=CDS|length=35853bp|location=Sequence derived from alignment at scaffold_309:734219..781504- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058311 vs. Swiss-Prot (Human)
Match: NAA25 (N-alpha-acetyltransferase 25, NatB auxiliary subunit OS=Homo sapiens GN=NAA25 PE=1 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 2.972e-101 Identity = 221/654 (33.79%), Postives = 353/654 (53.98%), Query Frame = 3
Query: 105 VGSSSHVVD--ERRLRPIYDALDNLNNKQAIKLADXXXXXXXXXXXXXXXXXXXXXRSHKKVESNNLLENIKETTTKFDDPTLQAMTMCYKESSNIEGIITIYELAVKQCKENGKENEEFLSHLFMAYVRVGNFSKQQQVAMNLYKAHPKNPYYFWAVMSNVMQAITTE-EGKKRTMFLSLAERMVKKFIGEGKMESQEEKDLYMMILELMGKHEEILKFLK----EESALKRRDLEIECLA---KLGRNVELNVLYKDMLTDYPDEWSHITGLINTCLELKDYKPDAPIDTEN--KQPIH-TIENLTEFISNL----GNNNSFMRGPPLGGLEICKLTKDVEGARVQ---------LIEYFKRFGGKPCCYNDMRPYLHLIDDELPNK---KFIDDLKST---HTPTQDGSSHSEKINKLNREICIECIAMQLNYHSELSKDEKFAKAKQYVLKYNESLSLGKDLKPTEPQYGDTLIQLSFHILVELNNEIGDDSKLWHIILMLEEAVEKSKTFPAFKLFLIFLYAQLGASSACEKLLEDLEVKYIVYDSLGYFFSNATYNTGQFQLTQRIYDHTFSFYKASERDIPEQLASGYKYGSFRQVEEMTELKDRLKRSAHRYHIVMEQMFINIAKECNNMLDTRKKFNTAFAEQLQ 1970
+ + HV D +RRLRPIYD LDN NNK AI+ AD LLKK K+ CAK LKA+ L R+ K+ E+ L + + DD +LQA+T+ Y+E E + +YE AVK+ + EE+ SHLFMAY RVG + K QQ M LYK PKNPYYFW+VMS +MQ+I+ + E +TMFL LAERMV+K + E K+E++ E +LY MILE +GK++E L ++ E+ + + E +C+A KL R E N L + +L D+W ++ L + P + E+ + +H + E +FI + ++ +RGP L LE+ + + +G + + +YFK+FG KPCC+ D++ ++ D LP KFI+ L TPT+D + I L + +C+ + L + + K++K + ++ +L+Y L GK TE Q+ D L+ H L+++ E GD++ +W + +LEE + S + FKL L+ +Y LGA L L+ K+I +D++GY + + GQ+ + + F+ ++++D E + YKYG+F ++ E ++RL S H + E+M +++ E N +T+ AE ++
Sbjct: 1 MATRGHVQDPNDRRLRPIYDYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPT-DDNSLQALTILYREMHRPELVTKLYEAAVKKVPNS----EEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAMYKKLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGEHSLEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRS-QGCNDEYKLGDPEELMFQYFKKFGDKPCCFTDLKVFV----DLLPATQCTKFINQLLGVVPLSTPTEDKLALPADIRALQQHLCVVQLTRLLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWRETGDETTVWQALTLLEEGLTHSPSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYIIQAYKYGAFEKIPEFIAFRNRLNNSLHFAQVRTERMLLDLLLEAN--------ISTSLAESIK 636 The following BLAST results are available for this feature:
BLAST of TCONS_00058311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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