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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058319 ID=TCONS_00058319|Name=TCONS_00058319|organism=Clytia hemisphaerica|type=transcript|length=1667bp
GTGGAAAGTAAATGACCGTAAATGATCTGGATTATTGCACTGTTTATGAC
TAGCTTTTTCCAGCCCaatgatacacccccttctcacagacccggtagga
ttctttcagccagtagggataaaaataacTGACTGAAACTTGATGGGGGG
GGGTTGGTATTCGCATATTTTTTATggttggggatttcaattcttttgtt
ttcaagtcaaaaaattcagtgggcaTGGGGAAAATAGCAtgatattttgc
agtgaaggttggtttatttgatcattttcagtggggacaaaaattggagt
ataattttccaccggggacgatatttttgccaatttttccagtgagaaAG
GGTCCCAGTGGGTATTTAAGATAGGGGTATCACCGATACTGTGTAATCAT
GAATCTCTATTTCTGTATATTCgttttagcaaaaaaaacatcactATTAC
CTGGAAACTTACAACATATGAGAAgaagtgaaaaaataataatttatatA
TAGAGAAAAAAGTTGAAGCATTTGTTGCTTCGAAGAGACAAGAGACTGTT
TTGGGTATGAGTCACCTCACCCATACAAAAACAATAAATAGCATTGTCAG
CAAAAAAGTCACGAAACAAACATGCAGGTCATATTGCTGGCGGTTATTCT
TTCGTGTGGtgtttttgtttccttggtGATAACAATCGTCTGTTGCTACA
TCCGCATCAGTAATAAAAAAGTGCAACGTCAGCGTTCTTTATATGCAGAA
TATTCAGATCAAGAACCGTTCGTGGATGGTTCAGTGCAAACAAACGATCA
CGTCATTAGCATAGATCCATCTCACGATTCACAATTGGATTTGGTAGATG
GCGAACATCTGGGCGTTCGTTTTGCACCTCAAACAGAACCGCCCTTAGAA
TCTCCTTTCAAACGTATTAAAAGTTATACCATCTCTGGCTGTTCACCAAG
GAATTCTAACAAATATAAAATGAGAACTCTCTCGGATGACTATACCGTCA
AAGATTGCAATAAAAACGAAACAGCCTTACGAACGTTGGCTGACACAATA
ACACGAGAAAACTCTATATTCGATAGCTTCTCAAAACTCAAAGACATTTA
CGATCATCAATCTACTCGCTTTGAAACTGATATTCCCTTACATGATGACA
GTGCTCATATTTCCGATACACAGCAACCGCACAGTGAAGGATTCGACCGC
GCGAAATACTTATATGATCGGTTTAAAGAAAGTATGGTCCCGATGGATGT
ACAGGACAGTGATGAAAAATTATCGGATGAAAAAAGTTGACGGAATTTTT
ACGAGAATCAACAGTGTCGAATGATTGAAGGATAGTCATTGTATGAGCTG
TGAGGGTACTACTAGCTTTCGTGGACGGTGACTATTTTTATCTACTTGGC
AGGATAATTGAAAGCTACTGACAAGATTGCTAAAATAGTTGTTGTTTTCG
TTGAAAAAAATGGATCATGGATGAAATAGCAGAAGGCTTGGATCATTTTT
TTGCAGGTTTTTATTTCGAAAAAAGACAAGaagaatttaatttaattatc
TAATTTATCTTCATTCTTATACGAATGGTGTCTGGAAAGAAGACAGGctg
agaaaaaatattgaaaataatctCACTACGGCAGATTTTAAATAAATAGA
AGAACAATTTCTCTGGG Run BLAST on NCBI protein sequence of TCONS_00058319-protein >TCONS_00058319-protein ID=TCONS_00058319-protein|Name=TCONS_00058319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MQVILLAVILSCGVFVSLVITIVCCYIRISNKKVQRQRSLYAEYSDQEPF
VDGSVQTNDHVISIDPSHDSQLDLVDGEHLGVRFAPQTEPPLESPFKRIK
SYTISGCSPRNSNKYKMRTLSDDYTVKDCNKNETALRTLADTITRENSIF
DSFSKLKDIYDHQSTRFETDIPLHDDSAHISDTQQPHSEGFDRAKYLYDR
FKESMVPMDVQDSDEKLSDEKS Run BLAST on NCBI transcript from alignment at scaffold_309:865983..868187- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058319 ID=TCONS_00058319|Name=TCONS_00058319|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at scaffold_309:865983..868187- (Clytia hemisphaerica)
GTGGAAAGTAAATGACCGTAAATGATCTGGATTATTGCACTGTTTATGAC
TAGCTTTTTCCAGCCCAATGATACACCCCCTTCTCACAGACCCGGTAGGA
TTCTTTCAGCCAGTAGGGATAAAAATAACTGACTGAAACTTGATGGGGGG
GGGTTGGTATTCGCATATTTTTTATGGTTGGGGATTTCAATTCTTTTGTT
TTCAAGTCAAAAAATTCAGTGGGCATGGGGAAAATAGCATGATATTTTGC
AGTGAAGGTTGGTTTATTTGATCATTTTCAGTGGGGACAAAAATTGGAGT
ATAATTTTCCACCGGGGACGATATTTTTGCCAATTTTTCCAGTGAGAAAG
GGTCCCAGTGGGTATTTAAGATAGGGGTATCACCGATACTGTGTAATCAT
GAATCTCTATTTCTGTATATTCGTTTTAGCAAAAAAAACATCACTATTAC
CTGGAAACTTACAACATATGAGAAGAAGTGAAAAAATAATAATTTATATA
TAGAGAAAAAAGTTGAAGCATTTGTTGCTTCGAAGAGACAAGAGACTGTT
TTGGGTATGAGTCACCTCACCCATACAAAAACAATAAATAGCATTGTCAG
CAAAAAAGTCACGAAACAAACATGCAGGTCATATTGCTGGCGGTTATTCT
TTCGTGTGGTGTTTTTGTTTCCTTGGTGATAACAATCGTCTGTTGCTACA
TCCGCATCAGTAATAAAAAAGTGCAACGTCAGCGTTCTTTATATGCAGAA
TATTCAGATCAAGAACCGTTCGTGGATGGTTCAGTGCAAACAAACGATCA
CGTCATTAGCATAGATCCATCTCACGATTCACAATTGGATTTGGTAGATG
GCGAACATCTGGGCGTTCGTTTTGCACCTCAAACAGAACCGCCCTTAGAA
TCTCCTTTCAAACGTATTAAAAGTTATACCATCTCTGGCTGTTCACCAAG
GAATTCTAACAAATATAAAATGAGAACTCTCTCGGGTAAGGCCAATTTGT
TTAATTCAGTAGTTCGATATCTATGTCATAGGCACGGAATCCTGAATTTA
ACTTTTTCCAAGCAATATGTTTTATGAAGTGCGTATTTTCTGGTCGTTGC
GTTGAGGCTGAAAATCAATTGTTGTTATCGTATGAAATTCTTAAATCGAA
GCTAATACGACAATGTTTTTAATATCCCTGTCTCAGTTATCCAGGAGAGT
TCTTTACTCAGTCAACTAACTTAATACATATGGGGAGTACCCGGAGGAGG
CACAATTTGGTATGGGACGTGCCGCTGGTCAGGTCCCTTTTTTTGGCTCT
AAAGATATCTGACATGGTCCAAAATTTACTAATTTCCGAGACGTATATCT
GGCAGGGTCGACTTAGCAAAATTATCAAGTTATTTCAGGGTGGAAGGCAA
AAAAAATTTATTTTTTGTTCCGGCAGGGTCCCAAATTTACCAAACAATAA
TATCTGACAGGTTCCACTTTTTTCTGCAACGCAGAATATTTCTTAAAGTT
TTTAACAATACTTCCTCCTTTAGATGACTATACCGTCAAAGATTGCAATA
AAAACGAAACAGCCTTACGAACGTTGGCTGACACAATAACACGAGAAAAC
TCTATATTCGATAGCTTCTCAAAACTCAAAGACATTTACGATCATCAATC
TACTCGCTTTGAAACTGATATTCCCTTACATGATGACAGTGCTCATATTT
CCGATACACAGCAACCGCACAGTGAAGGATTCGACCGCGCGAAATACTTA
TATGATCGGTTTAAAGAAAGTATGGTCCCGATGGATGTACAGGACAGTGA
TGAAAAATTATCGGATGAAAAAAGTTGACGGAATTTTTACGAGAATCAAC
AGTGTCGAATGATTGAAGGATAGTCATTGTATGAGCTGTGAGGGTACTAC
TAGCTTTCGTGGACGGTGACTATTTTTATCTACTTGGCAGGATAATTGAA
AGCTACTGACAAGATTGCTAAAATAGTTGTTGTTTTCGTTGAAAAAAATG
GATCATGGATGAAATAGCAGAAGGCTTGGATCATTTTTTTGCAGGTTTTT
ATTTCGAAAAAAGACAAGAAGAATTTAATTTAATTATCTAATTTATCTTC
ATTCTTATACGAATGGTGTCTGGAAAGAAGACAGGCTGAGAAAAAATATT
GAAAATAATCTCACTACGGCAGATTTTAAATAAATAGAAGAACAATTTCT
CTGGG Coding sequence (CDS) from alignment at scaffold_309:865983..868187- >TCONS_00058319 ID=TCONS_00058319|Name=TCONS_00058319|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_309:865983..868187- (Clytia hemisphaerica)
ATGACTATACCGTCAAAGATTGCAATAAAAACGAAACAGCCTTACGAACG
TTGGCTGACACAATAACACGAGAAAACTCTATATTCGATAGCTTCTCAAA
ACTCAAAGACATTTACGATCATCAATCTACTCGCTTTGAAACTGATATTC
CCTTACATGATGACAGTGCTCATATTTCCGATACACAGCAACCGCACAGT
GAAGGATTCGACCGCGCGAAATACTTATATGATCGGTTTAAAGAAAGTAT
GGTCCCGATGGATGTACAGGACAGTGATGAAAAATTATCGGATGAAAAAA
GTTGAATGCAGGTCATATTGCTGGCGGTTATTCTTTCGTGTGGTGTTTTT
GTTTCCTTGGTGATAACAATCGTCTGTTGCTACATCCGCATCAGTAATAA
AAAAGTGCAACGTCAGCGTTCTTTATATGCAGAATATTCAGATCAAGAAC
CGTTCGTGGATGGTTCAGTGCAAACAAACGATCACGTCATTAGCATAGAT
CCATCTCACGATTCACAATTGGATTTGGTAGATGGCGAACATCTGGGCGT
TCGTTTTGCACCTCAAACAGAACCGCCCTTAGAATCTCCTTTCAAACGTA
TTAAAAGTTATACCATCTCTGGCTGTTCACCAAGGAATTCTAACAAATAT
AAAATGAGAACTCTCTCGGATGACTATACCGTCAAAGATTGCAATAAAAA
CGAAACAGCCTTACGAACGTTGGCTGACACAATAACACGAGAAAACTCTA
TATTCGATAGCTTCTCAAAACTCAAAGACATTTACGATCATCAATCTACT
CGCTTTGAAACTGATATTCCCTTACATGATGACAGTGCTCATATTTCCGA
TACACAGCAACCGCACAGTGAAGGATTCGACCGCGCGAAATACTTATATG
ATCGGTTTAAAGAAAGTATGGTCCCGATGGATGTACAGGACAGTGATGAA
AAATTATCGGATGAAAAAAGTTGAATGCAGGTCATATTGCTGGCGGTTAT
TCTTTCGTGTGGTGTTTTTGTTTCCTTGGTGATAACAATCGTCTGTTGCT
ACATCCGCATCAGTAATAAAAAAGTGCAACGTCAGCGTTCTTTATATGCA
GAATATTCAGATCAAGAACCGTTCGTGGATGGTTCAGTGCAAACAAACGA
TCACGTCATTAGCATAGATCCATCTCACGATTCACAATTGGATTTGGTAG
ATGGCGAACATCTGGGCGTTCGTTTTGCACCTCAAACAGAACCGCCCTTA
GAATCTCCTTTCAAACGTATTAAAAGTTATACCATCTCTGGCTGTTCACC
AAGGAATTCTAACAAATATAAAATGAGAACTCTCTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058319-exon-scaffold_309-1575043694:867203..868187 | TCONS_00058319-exon-scaffold_309-1575043694:867203..868187 | Clytia hemisphaerica | exon |
| TCONS_00058319-exon-scaffold_309-1575043694:865983..866664 | TCONS_00058319-exon-scaffold_309-1575043694:865983..866664 | Clytia hemisphaerica | exon |
| TCONS_00058319-exon-scaffold_309-1510915933:867203..868187 | TCONS_00058319-exon-scaffold_309-1510915933:867203..868187 | Clytia hemisphaerica | exon |
| TCONS_00058319-exon-scaffold_309-1510915933:865983..866664 | TCONS_00058319-exon-scaffold_309-1510915933:865983..866664 | Clytia hemisphaerica | exon |
| TCONS_00058319-exon-scaffold_309-1491911889:867203..868187 | TCONS_00058319-exon-scaffold_309-1491911889:867203..868187 | Clytia hemisphaerica | exon |
| TCONS_00058319-exon-scaffold_309-1491911889:865983..866664 | TCONS_00058319-exon-scaffold_309-1491911889:865983..866664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:865983..868187 - |
Blast
The following BLAST results are available for this feature:
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