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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058323 ID=TCONS_00058323|Name=TCONS_00058323|organism=Clytia hemisphaerica|type=transcript|length=4886bpRun BLAST on NCBI protein sequence of TCONS_00058323-protein >TCONS_00058323-protein ID=TCONS_00058323-protein|Name=TCONS_00058323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1152bp MFMSTRYKKRPEPLTRKRPIFSADDSLAKLCEVLNNESSVTKLITPKYKDRun BLAST on NCBI transcript from alignment at scaffold_309:871844..891112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058323 ID=TCONS_00058323|Name=TCONS_00058323|organism=Clytia hemisphaerica|type=transcript|length=19269bp|location=Sequence derived from alignment at scaffold_309:871844..891112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:871844..891112- >TCONS_00058323 ID=TCONS_00058323|Name=TCONS_00058323|organism=Clytia hemisphaerica|type=CDS|length=69180bp|location=Sequence derived from alignment at scaffold_309:871844..891112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058323 vs. Swiss-Prot (Human)
Match: MLXIP (MLX-interacting protein OS=Homo sapiens GN=MLXIP PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 1.212e-31 Identity = 94/306 (30.72%), Postives = 150/306 (49.02%), Query Frame = 2
Query: 2735 GCTTLDSAIALVALRHGSISPEVPVN------LSRSIKTGEEIPAKRITILRGGETITSSTETRPSVSTTGAVGEITIXXXXXXXXXDNRVKEVQD--RTVYNEHRRQCHLSAEQRRRGMIKNAFEELSNMLYLNNFIQGPINGKPPKLSNAAI-LQNTCDYIQELVQERASCDVNMNKIQQEIEEMRNEISKCQKRLPSSGADTSLEGSNTVEKGFLAYCKDLIKLDRKSWIFSAIVRPLFDSYNKSVRTKTIDDFVESVIQWVDSHFTLPNLRLVILETLTKLSTSTAILDDSDCLNDLAASAL 3625
G S+I + L HG+ SP PV+ + GE++P L GG + T +G S S N D ++R+ H+SAEQ+RR IK F+ L++++ N+ KL++ AI LQ T +YI +L QER ++++EIEE+ I CQ+ LP++G + + ++ F Y K + K WIFS I++PLF+S+ V T ++++ + + W+D H +LP LR ++L TL +LSTST+IL D L + A+ A+
Sbjct: 621 GVPEFHSSILVTDLGHGTSSPPAPVSRLFPSTAQDPLGKGEQVP------LHGGSPQVTVTGPSRDCPNSGQASPCASEQSPSPQSPQNNCSGKSDPKNVAALKNRQMKHISAEQKRRFNIKMCFDMLNSLISNNS-----------KLTSHAITLQKTVEYITKLQQERGQMQEEARRLREEIEELNATIISCQQLLPATGVPVTRRQFDHMKDMFDEYVKTRTLQNWKFWIFSIIIKPLFESFKGMVSTSSLEELHRTALSWLDQHCSLPILRPMVLSTLRQLSTSTSILTDPAQLPEQASKAV 909 HSP 2 Score: 106.301 bits (264), Expect = 7.736e-23 Identity = 74/209 (35.41%), Postives = 105/209 (50.24%), Query Frame = 2
Query: 365 FSADDSLAKLCEVLNNESSVTKLITPKYKDFRSQKLKFDQKTRLNNAIWRAWHIQYKMNTKARFLQFAAPFS---DETQHSISQAVLLEGKYWRRRLDAVLHEFKKWRRLHGEKLLKNSGAMIKSISAVQGXXXXXXXXXXXXXXXVPKPDLPVEKS--LDTLSAMYAFPDTLFSSCLDMQKDIDNNPKHQLSKDSSGMIQPSLNHLNP 976
S D SL KL E + S KL++PK+K+F+ KL++ K RLNNAIWRAW++QY K F P D +H +A+ EGKYW+ R++ V+ E+ KWR ++L ++ + S+ VQ D K +P+E+ LDT M F DTLFS+ Q NP+ ++ MIQP L L P
Sbjct: 120 LSIDASLTKLFECMTLAYS-GKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSL--VQDDDMLYWHKHGDGW----KTPVPMEEDPLLDTDMLMSEFSDTLFSTLSSHQPVAWPNPREIAHLGNADMIQPGLIPLQP 321 The following BLAST results are available for this feature:
BLAST of TCONS_00058323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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