Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=transcript|length=1212bp TTGAGATGTTGATATTGTTTCTATGAAGAGTCTAATGAAGTAAAATTGAG AAGTATTTTCAAGATGTTTTGACTTGGCAATGTACGTTAATGTACGTGTT TCATCGCTCACATTGAGACGTTTCATTCAACTGTTAGGATGAGATGTTAT GCATACTAACGGACaaagataaattttgaaaatcacaaaTACTTGCTTGC ACTGATAAACAAATACGCTTTGAAGCTACCATATTGAAACCGCGATACAC AATCTAACATCATGGTTGAGAAATCTCACGCTCACCAACCACGACGCTAT TTCGTAATTACAGCGATTCTATTGGTAATATATGGTGTTTGTTATGTGTT GTTTCTAAGTGATGAGAAAGTCAACTCGGATATATTGAAGAAAGATTATA ATGCTTTCAAACTGAAATTACTGATCGAAACGAGgattaaaaatcaaaag atgaaaCAAAAAGTCGAAGCAGANGAAATTACTGATCGAaacgaaaatta aaaatcaaaagatgaaaCGAAAAGTCGAAGCAGAACTTATGGAAAGAGAA CCCAAGATTTCGAATTTGGGGGATATTCAGAAAACACAAAAACCATTGAT GTCAACAGACTCCAAAGTGATGAATTTGGGAGATAGTCAGTATACAGAAA AACTGCCTGGAAAGGTTTTGATGACGATGGATTCCGAAATGTTGAATTCC GATGATACCcaggaaagaaagaaaccaaTTGGAAAGGCTTTGATAACGAC GTTAGAACCAACAGTTGTCAAGACGAAAATTCTACCAAAGAAAGCAACGC TAAATAAAAACgataatattttcaaagtgACGACGTTAAAACCTACCAAA CATCCATCGAAGGCTCCAAAATTGACAACAGTAAAATTTACACAAACTGA TAAATCTAGACCAATAGACAggaaatctcgaaaaatgaaacattcaaCAA CACCAGCTACAACTTCAAAATCAAGACCGTCATGTCCTCACCCAACCTTA CCTGTCAAAAGCGGGGTacaaaatacagaccagataacCTGTAAACCGAA CCAACTTTCTCAATCCGCTTGTCAGTACGTTACAAAAAATTACCCTTATG AGTTTAACAAAAACAAGTGTGGTAACGGCAAGGAAGAACTAACAATATGT ACATTTGATGTAAAGAATGTTAAATTCAAATGTAACTATAAAGCTTGTGG AAAGAACTTCAC Run BLAST on NCBI protein sequence of TCONS_00058331-protein >TCONS_00058331-protein ID=TCONS_00058331-protein|Name=TCONS_00058331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MKRKVEAELMEREPKISNLGDIQKTQKPLMSTDSKVMNLGDSQYTEKLPG KVLMTMDSEMLNSDDTQERKKPIGKALITTLEPTVVKTKILPKKATLNKN DNIFKVTTLKPTKHPSKAPKLTTVKFTQTDKSRPIDRKSRKMKHSTTPAT TSKSRPSCPHPTLPVKSGVQNTDQITCKPNQLSQSACQYVTKNYPYEFNK NKCGNGKEELTICTFDVKNVKFKCNYKACGKNF Run BLAST on NCBI transcript from alignment at scaffold_309:130718..131929 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_309:130718..131929 (Clytia hemisphaerica) GTGAAGTTCTTTCCACAAGCTTTATAGTTACATTTGAATTTAACATTCTT
TACATCAAATGTACATATTGTTAGTTCTTCCTTGCCGTTACCACACTTGT
TTTTGTTAAACTCATAAGGGTAATTTTTTGTAACGTACTGACAAGCGGAT
TGAGAAAGTTGGTTCGGTTTACAGgttatctggtctgtattttgtACCCC
GCTTTTGACAGGTAAGGTTGGGTGAGGACATGACGGTCTTGATTTTGAAG
TTGTAGCTGGTGTTGttgaatgtttcatttttcgagatttccTGTCTATT
GGTCTAGATTTATCAGTTTGTGTAAATTTTACTGTTGTCAATTTTGGAGC
CTTCGATGGATGTTTGGTAGGTTTTAACGTCGTcactttgaaaatattat
cGTTTTTATTTAGCGTTGCTTTCTTTGGTAGAATTTTCGTCTTGACAACT
GTTGGTTCTAACGTCGTTATCAAAGCCTTTCCAAttggtttctttctttc
ctgGGTATCATCGGAATTCAACATTTCGGAATCCATCGTCATCAAAACCT
TTCCAGGCAGTTTTTCTGTATACTGACTATCTCCCAAATTCATCACTTTG
GAGTCTGTTGACATCAATGGTTTTTGTGTTTTCTGAATATCCCCCAAATT
CGAAATCTTGGGTTCTCTTTCCATAAGTTCTGCTTCGACTTTTCGtttca
tcttttgatttttaattttcgttTCGATCAGTAATTTCNTCTGCTTCGAC
TTTTTGtttcatcttttgatttttaatcCTCGTTTCGATCAGTAATTTCA
GTTTGAAAGCATTATAATCTTTCTTCAATATATCCGAGTTGACTTTCTCA
TCACTTAGAAACAACACATAACAAACACCATATATTACCAATAGAATCGC
TGTAATTACGAAATAGCGTCGTGGTTGGTGAGCGTGAGATTTCTCAACCA
TGATGTTAGATTGTGTATCGCGGTTTCAATATGGTAGCTTCAAAGCGTAT
TTGTTTATCAGTGCAAGCAAGTAtttgtgattttcaaaatttatctttGT
CCGTTAGTATGCATAACATCTCATCCTAACAGTTGAATGAAACGTCTCAA
TGTGAGCGATGAAACACGTACATTAACGTACATTGCCAAGTCAAAACATC
TTGAAAATACTTCTCAATTTTACTTCATTAGACTCTTCATAGAAACAATA
TCAACATCTCAA Coding sequence (CDS) from alignment at scaffold_309:130718..131929 >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_309:130718..131929 (Clytia hemisphaerica) GAAGTTCTTTCCACAAGCTTTATAGTTACATTTGAATTTAACATTCTTTA CATCAAATGTACATATTGTTAGTTCTTCCTTGCCGTTACCACACTTGTTT TTGTTAAACTCATAAGGGTAATTTTTTGTAACGTACTGACAAGCGGATTG AGAAAGTTGGTTCGGTTTACAGgttatctggtctgtattttgtACCCCGC TTTTGACAGGTAAGGTTGGGTGAGGACATGACGGTCTTGATTTTGAAGTT GTAGCTGGTGTTGttgaatgtttcatttttcgagatttccTGTCTATTGG TCTAGATTTATCAGTTTGTGTAAATTTTACTGTTGTCAATTTTGGAGCCT TCGATGGATGTTTGGTAGGTTTTAACGTCGTcactttgaaaatattatcG TTTTTATTTAGCGTTGCTTTCTTTGGTAGAATTTTCGTCTTGACAACTGT TGGTTCTAACGTCGTTATCAAAGCCTTTCCAAttggtttctttctttcct gGGTATCATCGGAATTCAACATTTCGGAATCCATCGTCATCAAAACCTTT CCAGGCAGTTTTTCTGTATACTGACTATCTCCCAAATTCATCACTTTGGA GTCTGTTGACATCAATGGTTTTTGTGTTTTCTGAATATCCCCCAAATTCG AAATCTTGGGTTCTCTTTCCATAAGTTCTGCTTCGACTTTTCGtttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058331-exon-scaffold_309-1491911889:130718..131929 | TCONS_00058331-exon-scaffold_309-1491911889:130718..131929 | Clytia hemisphaerica | exon |
TCONS_00058331-exon-scaffold_309-1510915933:130718..131929 | TCONS_00058331-exon-scaffold_309-1510915933:130718..131929 | Clytia hemisphaerica | exon |
TCONS_00058331-exon-scaffold_309-1575043694:130718..131929 | TCONS_00058331-exon-scaffold_309-1575043694:130718..131929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_309 | supercontig | scaffold_309:130718..131929 . |
Blast
The following BLAST results are available for this feature:
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