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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=transcript|length=1212bp
TTGAGATGTTGATATTGTTTCTATGAAGAGTCTAATGAAGTAAAATTGAG
AAGTATTTTCAAGATGTTTTGACTTGGCAATGTACGTTAATGTACGTGTT
TCATCGCTCACATTGAGACGTTTCATTCAACTGTTAGGATGAGATGTTAT
GCATACTAACGGACaaagataaattttgaaaatcacaaaTACTTGCTTGC
ACTGATAAACAAATACGCTTTGAAGCTACCATATTGAAACCGCGATACAC
AATCTAACATCATGGTTGAGAAATCTCACGCTCACCAACCACGACGCTAT
TTCGTAATTACAGCGATTCTATTGGTAATATATGGTGTTTGTTATGTGTT
GTTTCTAAGTGATGAGAAAGTCAACTCGGATATATTGAAGAAAGATTATA
ATGCTTTCAAACTGAAATTACTGATCGAAACGAGgattaaaaatcaaaag
atgaaaCAAAAAGTCGAAGCAGANGAAATTACTGATCGAaacgaaaatta
aaaatcaaaagatgaaaCGAAAAGTCGAAGCAGAACTTATGGAAAGAGAA
CCCAAGATTTCGAATTTGGGGGATATTCAGAAAACACAAAAACCATTGAT
GTCAACAGACTCCAAAGTGATGAATTTGGGAGATAGTCAGTATACAGAAA
AACTGCCTGGAAAGGTTTTGATGACGATGGATTCCGAAATGTTGAATTCC
GATGATACCcaggaaagaaagaaaccaaTTGGAAAGGCTTTGATAACGAC
GTTAGAACCAACAGTTGTCAAGACGAAAATTCTACCAAAGAAAGCAACGC
TAAATAAAAACgataatattttcaaagtgACGACGTTAAAACCTACCAAA
CATCCATCGAAGGCTCCAAAATTGACAACAGTAAAATTTACACAAACTGA
TAAATCTAGACCAATAGACAggaaatctcgaaaaatgaaacattcaaCAA
CACCAGCTACAACTTCAAAATCAAGACCGTCATGTCCTCACCCAACCTTA
CCTGTCAAAAGCGGGGTacaaaatacagaccagataacCTGTAAACCGAA
CCAACTTTCTCAATCCGCTTGTCAGTACGTTACAAAAAATTACCCTTATG
AGTTTAACAAAAACAAGTGTGGTAACGGCAAGGAAGAACTAACAATATGT
ACATTTGATGTAAAGAATGTTAAATTCAAATGTAACTATAAAGCTTGTGG
AAAGAACTTCAC Run BLAST on NCBI protein sequence of TCONS_00058331-protein >TCONS_00058331-protein ID=TCONS_00058331-protein|Name=TCONS_00058331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MKRKVEAELMEREPKISNLGDIQKTQKPLMSTDSKVMNLGDSQYTEKLPG
KVLMTMDSEMLNSDDTQERKKPIGKALITTLEPTVVKTKILPKKATLNKN
DNIFKVTTLKPTKHPSKAPKLTTVKFTQTDKSRPIDRKSRKMKHSTTPAT
TSKSRPSCPHPTLPVKSGVQNTDQITCKPNQLSQSACQYVTKNYPYEFNK
NKCGNGKEELTICTFDVKNVKFKCNYKACGKNF Run BLAST on NCBI transcript from alignment at scaffold_309:130718..131929 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_309:130718..131929 (Clytia hemisphaerica)
GTGAAGTTCTTTCCACAAGCTTTATAGTTACATTTGAATTTAACATTCTT
TACATCAAATGTACATATTGTTAGTTCTTCCTTGCCGTTACCACACTTGT
TTTTGTTAAACTCATAAGGGTAATTTTTTGTAACGTACTGACAAGCGGAT
TGAGAAAGTTGGTTCGGTTTACAGgttatctggtctgtattttgtACCCC
GCTTTTGACAGGTAAGGTTGGGTGAGGACATGACGGTCTTGATTTTGAAG
TTGTAGCTGGTGTTGttgaatgtttcatttttcgagatttccTGTCTATT
GGTCTAGATTTATCAGTTTGTGTAAATTTTACTGTTGTCAATTTTGGAGC
CTTCGATGGATGTTTGGTAGGTTTTAACGTCGTcactttgaaaatattat
cGTTTTTATTTAGCGTTGCTTTCTTTGGTAGAATTTTCGTCTTGACAACT
GTTGGTTCTAACGTCGTTATCAAAGCCTTTCCAAttggtttctttctttc
ctgGGTATCATCGGAATTCAACATTTCGGAATCCATCGTCATCAAAACCT
TTCCAGGCAGTTTTTCTGTATACTGACTATCTCCCAAATTCATCACTTTG
GAGTCTGTTGACATCAATGGTTTTTGTGTTTTCTGAATATCCCCCAAATT
CGAAATCTTGGGTTCTCTTTCCATAAGTTCTGCTTCGACTTTTCGtttca
tcttttgatttttaattttcgttTCGATCAGTAATTTCNTCTGCTTCGAC
TTTTTGtttcatcttttgatttttaatcCTCGTTTCGATCAGTAATTTCA
GTTTGAAAGCATTATAATCTTTCTTCAATATATCCGAGTTGACTTTCTCA
TCACTTAGAAACAACACATAACAAACACCATATATTACCAATAGAATCGC
TGTAATTACGAAATAGCGTCGTGGTTGGTGAGCGTGAGATTTCTCAACCA
TGATGTTAGATTGTGTATCGCGGTTTCAATATGGTAGCTTCAAAGCGTAT
TTGTTTATCAGTGCAAGCAAGTAtttgtgattttcaaaatttatctttGT
CCGTTAGTATGCATAACATCTCATCCTAACAGTTGAATGAAACGTCTCAA
TGTGAGCGATGAAACACGTACATTAACGTACATTGCCAAGTCAAAACATC
TTGAAAATACTTCTCAATTTTACTTCATTAGACTCTTCATAGAAACAATA
TCAACATCTCAA Coding sequence (CDS) from alignment at scaffold_309:130718..131929 >TCONS_00058331 ID=TCONS_00058331|Name=TCONS_00058331|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_309:130718..131929 (Clytia hemisphaerica)
GAAGTTCTTTCCACAAGCTTTATAGTTACATTTGAATTTAACATTCTTTA
CATCAAATGTACATATTGTTAGTTCTTCCTTGCCGTTACCACACTTGTTT
TTGTTAAACTCATAAGGGTAATTTTTTGTAACGTACTGACAAGCGGATTG
AGAAAGTTGGTTCGGTTTACAGgttatctggtctgtattttgtACCCCGC
TTTTGACAGGTAAGGTTGGGTGAGGACATGACGGTCTTGATTTTGAAGTT
GTAGCTGGTGTTGttgaatgtttcatttttcgagatttccTGTCTATTGG
TCTAGATTTATCAGTTTGTGTAAATTTTACTGTTGTCAATTTTGGAGCCT
TCGATGGATGTTTGGTAGGTTTTAACGTCGTcactttgaaaatattatcG
TTTTTATTTAGCGTTGCTTTCTTTGGTAGAATTTTCGTCTTGACAACTGT
TGGTTCTAACGTCGTTATCAAAGCCTTTCCAAttggtttctttctttcct
gGGTATCATCGGAATTCAACATTTCGGAATCCATCGTCATCAAAACCTTT
CCAGGCAGTTTTTCTGTATACTGACTATCTCCCAAATTCATCACTTTGGA
GTCTGTTGACATCAATGGTTTTTGTGTTTTCTGAATATCCCCCAAATTCG
AAATCTTGGGTTCTCTTTCCATAAGTTCTGCTTCGACTTTTCGtttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058331-exon-scaffold_309-1491911889:130718..131929 | TCONS_00058331-exon-scaffold_309-1491911889:130718..131929 | Clytia hemisphaerica | exon |
| TCONS_00058331-exon-scaffold_309-1510915933:130718..131929 | TCONS_00058331-exon-scaffold_309-1510915933:130718..131929 | Clytia hemisphaerica | exon |
| TCONS_00058331-exon-scaffold_309-1575043694:130718..131929 | TCONS_00058331-exon-scaffold_309-1575043694:130718..131929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:130718..131929 . |
Blast
The following BLAST results are available for this feature:
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