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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=transcript|length=2213bp
TTTCTTTGTAAATAATTTAGGATACAAAGtgtcaagaaattttttttttt
ttattgtttttttaatttttttaatcagttGAAGAAAATAATACACCGTA
GTTGTCagggttaaagaaaagaaacgagatgaagaaatttttgataaatt
aatttttcaccatTAAATAAACCATATTATATATAATTTATCTTATTACA
CTTTAAATTTCTTGCAGGGTTAATTTTTCGTTCTAACCCCTTGTTTTTGT
TAAGAGTTCTACAATACTTGAATTACTATAATGAGGAAAATTActtttga
gaatttgagaagTCGAAAGAGTTTTTTGACCCTTGACTTTTTAGCGATAT
TATTTTTCTAGACTAAAGGCAGTATCAAAGCAATGAAAtccaataaaatt
ttcaaaacactaCGGagtatcaaatttttcacttttatgtatcaaattat
gattttaaaacttacgaaataaaatataaatgataatgttattataataa
tGAGAATACTATAGGAATATTCTAAATTAAATGATTTAGCGTAGGAAGTA
GGAAGCAGCCAGGTAAAATAACCAATTGTAAAATGCGGACCCTAGGAGTG
TATTTTTGAAGTAAacgctttttttatgagaacatccaaacaatttttaa
gccttcatatatttttaacttttattttcacaattttttgagtatttttg
tccattttcttaagaaattgggtgttttagagtccacaaatccttaaaat
gttcttaaattgttcttatataatttgttcttataaaagaaaggtgTACC
CAAAATGCAATTCAAGGGTGTGCAATTTGTTGAGTGCTCTGTAACAGTAT
AATTTTTAGTTCTAGAGAAAACACACAATAAGTATAGCTTTGTATATAGG
GAAAATCATTATCCATTGCAAAATCATTACTACCAAAGTTGAAAGAGTAC
ATCAGGTTGATCAAGATGCTAAAAAGTCCAAAGGTTGGATATAGAAAGTA
GAGGTATGAAAATATATTAAACAATTATTGCTACTTATATGAGTTTTAAG
GTCAAAAGTTCACCTAcagttctttttctttgtagttCTGTGCAActaca
acacccctgtctcacagccccggtggaaattttttcctcagtggtgataa
aaattccaattgaaatcccaatggggatagaaattctattgttccaaggt
taaaaaatctagTGATGGTGGTTttaaagtgcaatttttaaacatggaat
ttcgaatggggacgACAATTTCCCAGTGGACCTGAAATTACaggtttttt
taccaccggggacgaaatttttgccaaacttTCTAGGGGGCGCGCTgggg
ttccagtgggtctgtgacacagtggTGCACTACAACAACTGCTATAATGC
TATTAATAAAACACATTGTACTGTTTATTAAATATTTATCTCGTAGATTC
TTCTTCCAATATTATCGAATGAATGTCAAAGTGGCGGGTGAATCTGCTTC
AAATGTTTAGAAACAACGAGTGGTCAAAGAAGCcaagaaatcaaaaattc
cTGGGTAATAAAGCGAATTATAATCACTTTGCAAACCACTGGCAACTCTT
GTTCCATTCTTCTTGACCCATATATCAACCACAAGCTCTGTGCTGTTGTT
GATTGTAATAGTGCTACCAGAATCCGAATTTGAAGCATGTCCTTTACTGA
AACCAGAGCTAAAGTAATAATAACAGAACACATTCAACGGGTCATCTCCA
GAATTCGCAACACCATTACTACTTAAACGCTGTTTTTCTGAAGATGATAA
TCCACCATTGTTTGGTAATTGTTGTGTTAATGCAACCATCTGGCTTCTCA
AACTATCAAGTTGTCTTCGAATTTCAGCTTCTTTTGTAGCTTGGTTTATT
GGCTTTTCAGTTGGTTGACCATTCGGGCCTATTTTTCGGTACCAATTCTT
GGGTATGGGTTTAGTATCATGTGTAACAAAGAAAGCagaaaacaacaata
aaacCCAAACTGTGTTCGCCATAGTTGACGGTATTTTAACCACCAAAGTT
ATGATATCAAATATTCTCACCTCTTCTTTGACAATCTTTCTCGACCAAAA
CACACCGAAACACACTTTATAAGATGTGATGTAGGTTGTTGACAAAAGGC
AAGAGATGTCAGAATGTTTGATCAAATCTCTTATTTAATAGATTATGAGC
ACAAATCATTATA Run BLAST on NCBI protein sequence of TCONS_00058344-protein >TCONS_00058344-protein ID=TCONS_00058344-protein|Name=TCONS_00058344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MANTVWVLLLFSAFFVTHDTKPIPKNWYRKIGPNGQPTEKPINQATKEAE
IRRQLDSLRSQMVALTQQLPNNGGLSSSEKQRLSSNGVANSGDDPLNVFC
YYYFSSGFSKGHASNSDSGSTITINNSTELVVDIWVKKNGTRVASGLQSD
YNSLYYPGIFDFLASLTTRCF Run BLAST on NCBI transcript from alignment at scaffold_309:527220..529432 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=transcript|length=2213bp|location=Sequence derived from alignment at scaffold_309:527220..529432 (Clytia hemisphaerica)
TATAATGATTTGTGCTCATAATCTATTAAATAAGAGATTTGATCAAACAT
TCTGACATCTCTTGCCTTTTGTCAACAACCTACATCACATCTTATAAAGT
GTGTTTCGGTGTGTTTTGGTCGAGAAAGATTGTCAAAGAAGAGGTGAGAA
TATTTGATATCATAACTTTGGTGGTTAAAATACCGTCAACTATGGCGAAC
ACAGTTTGGgttttattgttgttttctGCTTTCTTTGTTACACATGATAC
TAAACCCATACCCAAGAATTGGTACCGAAAAATAGGCCCGAATGGTCAAC
CAACTGAAAAGCCAATAAACCAAGCTACAAAAGAAGCTGAAATTCGAAGA
CAACTTGATAGTTTGAGAAGCCAGATGGTTGCATTAACACAACAATTACC
AAACAATGGTGGATTATCATCTTCAGAAAAACAGCGTTTAAGTAGTAATG
GTGTTGCGAATTCTGGAGATGACCCGTTGAATGTGTTCTGTTATTATTAC
TTTAGCTCTGGTTTCAGTAAAGGACATGCTTCAAATTCGGATTCTGGTAG
CACTATTACAATCAACAACAGCACAGAGCTTGTGGTTGATATATGGGTCA
AGAAGAATGGAACAAGAGTTGCCAGTGGTTTGCAAAGTGATTATAATTCG
CTTTATTACCCAggaatttttgatttcttgGCTTCTTTGACCACTCGTTG
TTTCTAAACATTTGAAGCAGATTCACCCGCCACTTTGACATTCATTCGAT
AATATTGGAAGAAGAATCTACGAGATAAATATTTAATAAACAGTACAATG
TGTTTTATTAATAGCATTATAGCAGTTGTTGTAGTGCAccactgtgtcac
agacccactggaaccccAGCGCGCCCCCTAGAaagtttggcaaaaatttc
gtccccggtggtaaaaaaacctGTAATTTCAGGTCCACTGGGAAATTGTc
gtccccattcgaaattccatgtttaaaaattgcactttaaAACCACCATC
Actagattttttaaccttggaacaatagaatttctatccccattgggatt
tcaattggaatttttatcaccactgaggaaaaaatttccaccggggctgt
gagacaggggtgttgtagTTGCACAGaactacaaagaaaaagaactgTAG
GTGAACTTTTGACCTTAAAACTCATATAAGTAGCAATAATTGTTTAATAT
ATTTTCATACCTCTACTTTCTATATCCAACCTTTGGACTTTTTAGCATCT
TGATCAACCTGATGTACTCTTTCAACTTTGGTAGTAATGATTTTGCAATG
GATAATGATTTTCCCTATATACAAAGCTATACTTATTGTGTGTTTTCTCT
AGAACTAAAAATTATACTGTTACAGAGCACTCAACAAATTGCACACCCTT
GAATTGCATTTTGGGTAcacctttcttttataagaacaaattatataaga
acaatttaagaacattttaaggatttgtggactctaaaacacccaatttc
ttaagaaaatggacaaaaatactcaaaaaattgtgaaaataaaagttaaa
aatatatgaaggcttaaaaattgtttggatgttctcataaaaaaagcgtT
TACTTCAAAAATACACTCCTAGGGTCCGCATTTTACAATTGGTTATTTTA
CCTGGCTGCTTCCTACTTCCTACGCTAAATCATTTAATTTAGAATATTCC
TATAGTATTCTCattattataataacattatcatttatattttatttcgt
aagttttaaaatcataatttgatacataaaagtgaaaaatttgatactCC
GtagtgttttgaaaattttattggaTTTCATTGCTTTGATACTGCCTTTA
GTCTAGAAAAATAATATCGCTAAAAAGTCAAGGGTCAAAAAACTCTTTCG
ActtctcaaattctcaaaagTAATTTTCCTCATTATAGTAATTCAAGTAT
TGTAGAACTCTTAACAAAAACAAGGGGTTAGAACGAAAAATTAACCCTGC
AAGAAATTTAAAGTGTAATAAGATAAATTATATATAATATGGTTTATTTA
atggtgaaaaattaatttatcaaaaatttcttcatctcgtttcttttctt
taaccctGACAACTACGGTGTATTATTTTCTTCaactgattaaaaaaatt
aaaaaaacaataaaaaaaaaaaaatttcttgacaCTTTGTATCCTAAATT
ATTTACAAAGAAA Coding sequence (CDS) from alignment at scaffold_309:527220..529432 >TCONS_00058344 ID=TCONS_00058344|Name=TCONS_00058344|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_309:527220..529432 (Clytia hemisphaerica)
ATGGCGAACACAGTTTGGgttttattgttgttttctGCTTTCTTTGTTAC
ACATGATACTAAACCCATACCCAAGAATTGGTACCGAAAAATAGGCCCGA
ATGGTCAACCAACTGAAAAGCCAATAAACCAAGCTACAAAAGAAGCTGAA
ATTCGAAGACAACTTGATAGTTTGAGAAGCCAGATGGTTGCATTAACACA
ACAATTACCAAACAATGGTGGATTATCATCTTCAGAAAAACAGCGTTTAA
GTAGTAATGGTGTTGCGAATTCTGGAGATGACCCGTTGAATGTGTTCTGT
TATTATTACTTTAGCTCTGGTTTCAGTAAAGGACATGCTTCAAATTCGGA
TTCTGGTAGCACTATTACAATCAACAACAGCACAGAGCTTGTGGTTGATA
TATGGGTCAAGAAGAATGGAACAAGAGTTGCCAGTGGTTTGCAAAGTGAT
TATAATTCGCTTTATTACCCAggaatttttgatttcttgGCTTCTTTGAC
CACTCGTTGTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058344-exon-scaffold_309-1491911889:527220..529432 | TCONS_00058344-exon-scaffold_309-1491911889:527220..529432 | Clytia hemisphaerica | exon |
| TCONS_00058344-exon-scaffold_309-1510915933:527220..529432 | TCONS_00058344-exon-scaffold_309-1510915933:527220..529432 | Clytia hemisphaerica | exon |
| TCONS_00058344-exon-scaffold_309-1575043694:527220..529432 | TCONS_00058344-exon-scaffold_309-1575043694:527220..529432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:527220..529432 . |
Blast
The following BLAST results are available for this feature:
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