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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp
TCAGAAGTATTAATGTAAAAATGGATGGATACATTCACTGTGAAAGCGAA
ATAACCTCAACACAATTTCATAATGACATTGCTCGACATCTTCAAAAGAA
CAGATTGTATGGTGATAAATTTACTTTGTTATTCATAAGTGATGATGGAA
AGGAAGATATCTCGaaggaagaagaaaatattGTTGTTTTATACAGAACG
AAGACGAGAAACGACTTTGCGAGTGACTATTTCGATCAATTAAAAACGCT
CGAATTGGGACACGTTTTGATCTATATGAAAAACATTACATCAACTATGG
ACTTAGTGCATTTACTCCGACCCATTGTCTCCACTAGAATGTTGGCAATT
GCTGAGAGACAAACAAGCGGACGCGGTAGGAGCAACACAAAATGGGAATC
GCCTCTCGGATGCGCTATGTTTACTTTTAACCTGGAATATGATTTGGATT
CCCCTCTTGGGCAATATCCAGCTTTTTTGGGCTACTTAACTGCTTCTAGT
ATAGTTCGTGCCGTCCAGGATTTGACTGAAGGTGTTATTCAACTAAGAAT
TAAGTGGCCCAATGACATTTTCGCGCCTGATTGCTCGACCAAGATTGGCG
GAACGCTACATGACGTCATACAAAATGGTAGCGGAGCTGTGATAGGTGTT
GGGTTTAACGTTGCGAACGAGAAACCGACTGTTTGTTTGAACGCTTTAAT
TGACGAATGGAATATGAATAACGGTCAAAAGACACGACAGCCAATCACCA
TTCAGCAGTTCGTGTCCTGCTTCATGAACCACTTCGAgcgttttttcaaa
ctttttcaaaatggaaaaCGTGAGgaacttttaaatgtttatttagcTAC
TTGGCTTCATCAAAACCAAACTTTCTCTAACCAAATCGATGAAAATATAA
ATCCATATGACGTCATTATCAGAGGTCTGGACAAGAAAGGTTGTTTATTC
TGTGAGAAGGTTTTAGACCAATCTGAAGAGAGTATTTCACCACATGGTCT
TTCGATGGATGTTGTGAAACAAATCATCCATAAAAAAATCTCACCCCCGT
CTTAATAAAAAGTACAGGATTCGTGATTTCGGAAAAGTCCCAAGAGAATC
AATAAAGATGGAAGGATAATAACTTTTATGACTTTTTATCGGActatatt
tttaatattatcaaaatatttcttatataatTTTCACGAATTTAATCCGA
CATATTAAATCTCCAATATTGAAACTCATTGGCTTGATTCGGAAATTCAC
CAGGTCAAATGAAgtaattcatttttttattaatct Run BLAST on NCBI protein sequence of TCONS_00058347-protein >TCONS_00058347-protein ID=TCONS_00058347-protein|Name=TCONS_00058347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
RSINVKMDGYIHCESEITSTQFHNDIARHLQKNRLYGDKFTLLFISDDGK
EDISKEEENIVVLYRTKTRNDFASDYFDQLKTLELGHVLIYMKNITSTMD
LVHLLRPIVSTRMLAIAERQTSGRGRSNTKWESPLGCAMFTFNLEYDLDS
PLGQYPAFLGYLTASSIVRAVQDLTEGVIQLRIKWPNDIFAPDCSTKIGG
TLHDVIQNGSGAVIGVGFNVANEKPTVCLNALIDEWNMNNGQKTRQPITI
QQFVSCFMNHFERFFKLFQNGKREELLNVYLATWLHQNQTFSNQIDENIN
PYDVIIRGLDKKGCLFCEKVLDQSEESISPHGLSMDVVKQIIHKKISPPS Run BLAST on NCBI transcript from alignment at scaffold_309:708782..710067 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica)
agattaataaaaaaatgaattacTTCATTTGACCTGGTGAATTTCCGAAT
CAAGCCAATGAGTTTCAATATTGGAGATTTAATATGTCGGATTAAATTCG
TGAAAattatataagaaatattttgataatattaaaaatatagTCCGATA
AAAAGTCATAAAAGTTATTATCCTTCCATCTTTATTGATTCTCTTGGGAC
TTTTCCGAAATCACGAATCCTGTACTTTTTATTAAGACGGGGGTGAGATT
TTTTTATGGATGATTTGTTTCACAACATCCATCGAAAGACCATGTGGTGA
AATACTCTCTTCAGATTGGTCTAAAACCTTCTCACAGAATAAACAACCTT
TCTTGTCCAGACCTCTGATAATGACGTCATATGGATTTATATTTTCATCG
ATTTGGTTAGAGAAAGTTTGGTTTTGATGAAGCCAAGTAgctaaataaac
atttaaaagttcCTCACGttttccattttgaaaaagtttgaaaaaacgcT
CGAAGTGGTTCATGAAGCAGGACACGAACTGCTGAATGGTGATTGGCTGT
CGTGTCTTTTGACCGTTATTCATATTCCATTCGTCAATTAAAGCGTTCAA
ACAAACAGTCGGTTTCTCGTTCGCAACGTTAAACCCAACACCTATCACAG
CTCCGCTACCATTTTGTATGACGTCATGTAGCGTTCCGCCAATCTTGGTC
GAGCAATCAGGCGCGAAAATGTCATTGGGCCACTTAATTCTTAGTTGAAT
AACACCTTCAGTCAAATCCTGGACGGCACGAACTATACTAGAAGCAGTTA
AGTAGCCCAAAAAAGCTGGATATTGCCCAAGAGGGGAATCCAAATCATAT
TCCAGGTTAAAAGTAAACATAGCGCATCCGAGAGGCGATTCCCATTTTGT
GTTGCTCCTACCGCGTCCGCTTGTTTGTCTCTCAGCAATTGCCAACATTC
TAGTGGAGACAATGGGTCGGAGTAAATGCACTAAGTCCATAGTTGATGTA
ATGTTTTTCATATAGATCAAAACGTGTCCCAATTCGAGCGTTTTTAATTG
ATCGAAATAGTCACTCGCAAAGTCGTTTCTCGTCTTCGTTCTGTATAAAA
CAACaatattttcttcttccttCGAGATATCTTCCTTTCCATCATCACTT
ATGAATAACAAAGTAAATTTATCACCATACAATCTGTTCTTTTGAAGATG
TCGAGCAATGTCATTATGAAATTGTGTTGAGGTTATTTCGCTTTCACAGT
GAATGTATCCATCCATTTTTACATTAATACTTCTGA Coding sequence (CDS) from alignment at scaffold_309:708782..710067 >TCONS_00058347 ID=TCONS_00058347|Name=TCONS_00058347|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_309:708782..710067 (Clytia hemisphaerica)
TTAAGACGGGGGTGAGATTTTTTTATGGATGATTTGTTTCACAACATCCA
TCGAAAGACCATGTGGTGAAATACTCTCTTCAGATTGGTCTAAAACCTTC
TCACAGAATAAACAACCTTTCTTGTCCAGACCTCTGATAATGACGTCATA
TGGATTTATATTTTCATCGATTTGGTTAGAGAAAGTTTGGTTTTGATGAA
GCCAAGTAgctaaataaacatttaaaagttcCTCACGttttccattttga
aaaagtttgaaaaaacgcTCGAAGTGGTTCATGAAGCAGGACACGAACTG
CTGAATGGTGATTGGCTGTCGTGTCTTTTGACCGTTATTCATATTCCATT
CGTCAATTAAAGCGTTCAAACAAACAGTCGGTTTCTCGTTCGCAACGTTA
AACCCAACACCTATCACAGCTCCGCTACCATTTTGTATGACGTCATGTAG
CGTTCCGCCAATCTTGGTCGAGCAATCAGGCGCGAAAATGTCATTGGGCC
ACTTAATTCTTAGTTGAATAACACCTTCAGTCAAATCCTGGACGGCACGA
ACTATACTAGAAGCAGTTAAGTAGCCCAAAAAAGCTGGATATTGCCCAAG
AGGGGAATCCAAATCATATTCCAGGTTAAAAGTAAACATAGCGCATCCGA
GAGGCGATTCCCATTTTGTGTTGCTCCTACCGCGTCCGCTTGTTTGTCTC
TCAGCAATTGCCAACATTCTAGTGGAGACAATGGGTCGGAGTAAATGCAC
TAAGTCCATAGTTGATGTAATGTTTTTCATATAGATCAAAACGTGTCCCA
ATTCGAGCGTTTTTAATTGATCGAAATAGTCACTCGCAAAGTCGTTTCTC
GTCTTCGTTCTGTATAAAACAACaatattttcttcttccttCGAGATATC
TTCCTTTCCATCATCACTTATGAATAACAAAGTAAATTTATCACCATACA
ATCTGTTCTTTTGAAGATGTCGAGCAATGTCATTATGAAATTGTGTTGAG
GTTATTTCGCTTTCACAGTGAATGTATCCATCCATTTTTACATTAATACT
TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058347-exon-scaffold_309-1491911889:708782..710067 | TCONS_00058347-exon-scaffold_309-1491911889:708782..710067 | Clytia hemisphaerica | exon |
| TCONS_00058347-exon-scaffold_309-1510915933:708782..710067 | TCONS_00058347-exon-scaffold_309-1510915933:708782..710067 | Clytia hemisphaerica | exon |
| TCONS_00058347-exon-scaffold_309-1575043694:708782..710067 | TCONS_00058347-exon-scaffold_309-1575043694:708782..710067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:708782..710067 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004143 | BPL_LPL_catalytic |
| IPR004408 | Biotin_CoA_COase_ligase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006464 | cellular protein modification process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004077 | biotin-[acetyl-CoA-carboxylase] ligase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006464 |
cellular protein modification process |
| molecular_function |
GO:0004077 |
biotin-[acetyl-CoA-carboxylase] ligase activity |
Blast
BLAST of TCONS_00058347 vs. Swiss-Prot (Human)
Match: BPL1 (Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.372e-34 Identity = 94/287 (32.75%), Postives = 148/287 (51.57%), Query Frame = 3
Query: 216 FASDYFD------QLKTLELGHVLIYMKNITSTMDLVH--LLRPIVSTRMLAIAERQTSGRGRSNTKWESPLGCAMFTFNLEYDLDSPLGQYPAFLGYLTASSIVRAVQDLTE-GVIQLRIKWPNDIFAPDCSTKIGGTLHDVIQNGSG--AVIGVGFNVANEKPTVCLNALIDEWNMNNGQKTRQPITIQQFVSCFMNHFERFFKLFQNGKREELLNVYLATWLHQNQTFSNQIDENINPYDVIIRGLDKKGCLFCEKVLDQSEE--SISPHGLSMDVVKQIIHKK 1037
F+S++F+ L+T +LG V+++ + +TM L+ + + ++ IA RQT G+GR W SP+GCA+ T + L S LGQ F+ +L + ++V AV+ + E I LR+KWPNDI+ D KIGG L + G +IG GFNV N PT+C+N LI E+N + + + P+ ++ + E+ K FQ+ +L +Y W+H Q E V I GLD G L +V + E ++ P G S D+++ +I K
Sbjct: 446 FSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTPQEMGLIVIAARQTEGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDINLRVKWPNDIYYSDL-MKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELK-PLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPK---VSIVGLDDSGFL---QVHQEGGEVVTVHPDGNSFDMLRNLILPK 724
The following BLAST results are available for this feature:
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