TCONS_00058349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058349
Unique NameTCONS_00058349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058349 ID=TCONS_00058349|Name=TCONS_00058349|organism=Clytia hemisphaerica|type=transcript|length=270bp
ATCAACCGACAGCTGACCAATTGTCAACAATCACAGACTGGATCATAGAC
ATAATTAAGGAATATGTACCAAAACGAAAACCAAACACTAAAAGATTTCA
GAAGATACCACGCGAGCGAAAGATTTtattcagaaaaagaaaaaacattt
ttagaaaatttctaAACCcaatgaaaaatgcaaaatccaaacaaaaatta
atagaCATTGAAACTAAACTAAAGCTATCCTACGAATCAGAGAAGAAAAG
CCAGGAAAGGAAGGCAACNN
Run BLAST on NCBI

transcript from alignment at scaffold_309:844619..844888

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058349 ID=TCONS_00058349|Name=TCONS_00058349|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_309:844619..844888 (Clytia hemisphaerica)
NNGTTGCCTTCCTTTCCTGGCTTTTCTTCTCTGATTCGTAGGATAGCTTT
AGTTTAGTTTCAATGtctattaatttttgtttggattttgcatttttcat
tgGGTTtagaaattttctaaaaatgttttttctttttctgaataAAATCT
TTCGCTCGCGTGGTATCTTCTGAAATCTTTTAGTGTTTGGTTTTCGTTTT
GGTACATATTCCTTAATTATGTCTATGATCCAGTCTGTGATTGTTGACAA
TTGGTCAGCTGTCGGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036758XLOC_036758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058349-exon-scaffold_309-1491911889:844619..844888TCONS_00058349-exon-scaffold_309-1491911889:844619..844888Clytia hemisphaericaexon
TCONS_00058349-exon-scaffold_309-1510915933:844619..844888TCONS_00058349-exon-scaffold_309-1510915933:844619..844888Clytia hemisphaericaexon
TCONS_00058349-exon-scaffold_309-1575043694:844619..844888TCONS_00058349-exon-scaffold_309-1575043694:844619..844888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:844619..844888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30813	2.17868	0	5.04602	20.1833	6.30278	16.4662	24.8315	7.00514	4.36241	3.23384	8.21106	2.64343	6.57427	2.48553	1.01206	2.26612	1.49913	1.16189	0	5.09908	5.1764	4.24157	3.6877	0	4.96659	0.498234	4.31246	3.15051	0.00970778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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