TCONS_00058366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058366
Unique NameTCONS_00058366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058366 ID=TCONS_00058366|Name=TCONS_00058366|organism=Clytia hemisphaerica|type=transcript|length=1073bp
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAATAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAGAGAAG
TTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACA
TTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGA
TTTGATGATACAGCAGcTTCTATTGCACGCCCTATTAGGAAAGCCAAGAT
GAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGGGAACCAGGAA
TTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCA
AacAACAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTAT
TATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATA
GGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCC
GGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAATAT
ACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAA
AGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTATATG
GTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAATAAC
AATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaaaca
aaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTC
CTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAGGAA
GTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGTCCG
gaagcttatttttcaaatattttgttagctttttcctttgttgccatcaa
aagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtactcct
cttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:112..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058366 ID=TCONS_00058366|Name=TCONS_00058366|organism=Clytia hemisphaerica|type=transcript|length=3409bp|location=Sequence derived from alignment at scaffold_31:112..3520+ (Clytia hemisphaerica)
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttac
aaatagaaattATCGTTATTTTTCTACGGTTCtctttttctattgttatt
tttcGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAA
AGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAAT
GGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGG
AGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaaat
tATCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcac
TTTGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAAA
GAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATG
GACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAG
TGGATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTAT
CGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTT
GAAGTTTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAGAA
GTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGAC
ATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGG
ATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGT
TATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAA
GTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAGTT
TTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATT
CTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGG
ATTTGATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCCGA
GTAACAAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtcat
ttattaaatttggttcattggatcaaaagttatcctaatttgaaaaaaaa
gttacttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaattt
ttattctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCATTA
CGTAGTAATTtagaaacataatttttttcaaacttgagcctagaaagggt
ttaaaatcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTTTT
AGATCTCTTTTTAGAATATTCACctgaaagagagaaacttttttgtggcg
caccagGTATATAATATCACTATATTGAAAAcgatttcattttctttcag
cTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAG
TCGACTGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGATT
CATGTCCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAAAT
GTTGTCAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAACAA
AATGAATCCTTATTATTGTTattcttgtttttattattattgtatTCAAA
GATTCTATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCCCA
TAGCAAACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACCAG
GAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCC
TCAAGTATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTACTC
TTGAAATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGGTa
catgaaattttattttcaaaactttttagatATAATCCCTATTTCTTTTC
CAATTGAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATATC
GAATCTTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTCTG
GCTCTGGGTCATTTATTATCACAATTGtaattctcttttattttagacAA
CAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGT
GTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTAT
GAAGAGTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTAAA
GATTATACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTTGT
GAAAATTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTTTA
ACCTACTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTctaa
taatttaattttgaattttgcaaaaaattttcaCCCAATACATTTTTATT
CCGAAcccctgcttgttaatttttggaaaattttatttgaaagttatTTT
CCTTGCCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCTGT
AATACCTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATAAT
ATCTATATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGTTT
TTCATGTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAATGT
GATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCG
GACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTA
GAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTT
TACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTT
TGCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTC
TTGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGT
CTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCT
AATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAA
ATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttc
aaatattttgttagctttttcctttgttgccatcaaaagataaaaatcaa
tttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggttt
gagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058366-exon-scaffold_31-1491911889:112..190TCONS_00058366-exon-scaffold_31-1491911889:112..190Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:112..190TCONS_00058366-exon-scaffold_31-1510915933:112..190Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:112..190TCONS_00058366-exon-scaffold_31-1575043694:112..190Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:677..731TCONS_00058366-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:677..731TCONS_00058366-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:677..731TCONS_00058366-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:847..978TCONS_00058366-exon-scaffold_31-1491911889:847..978Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:847..978TCONS_00058366-exon-scaffold_31-1510915933:847..978Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:847..978TCONS_00058366-exon-scaffold_31-1575043694:847..978Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:1662..1733TCONS_00058366-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:1662..1733TCONS_00058366-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:1662..1733TCONS_00058366-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:2003..2065TCONS_00058366-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:2003..2065TCONS_00058366-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:2003..2065TCONS_00058366-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:2358..2457TCONS_00058366-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:2358..2457TCONS_00058366-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:2358..2457TCONS_00058366-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1491911889:2949..3520TCONS_00058366-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1510915933:2949..3520TCONS_00058366-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058366-exon-scaffold_31-1575043694:2949..3520TCONS_00058366-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:112..3520 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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