TCONS_00058367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058367
Unique NameTCONS_00058367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058367 ID=TCONS_00058367|Name=TCONS_00058367|organism=Clytia hemisphaerica|type=transcript|length=939bp
AACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAAT
GATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTCAACAAGATGA
TGATTTGGAGAGTGGATTTGATGATACAGCAGcTTCTATTGCACGCCCTA
TTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACA
ACCAGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAA
AAAAACATCAGCCTCAAacAACAATTCAATGAAACGCAAaagaaaagagg
aaaagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAA
AAAACTGATGATAATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTG
TCATCTCCAGTGTTCCGGCATAAAATATCGGACGTCAAAATATGACACTA
TTAATCTTGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAA
AGATTGAACAATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTA
ATCGTATTTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTT
TTACGAAGACAATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattg
aatgaaaacaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCG
GACTTTTTTGCACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAA
CCCCCATGTTGAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTA
TAAAAACCCTGGTCCGgaagcttatttttcaaatattttgttagcttttt
cctttgttgccatcaaaagataaaaatcaatttgctcAATTTTGGATCAC
GTTACCGagtactcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:114..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058367 ID=TCONS_00058367|Name=TCONS_00058367|organism=Clytia hemisphaerica|type=transcript|length=3407bp|location=Sequence derived from alignment at scaffold_31:114..3520+ (Clytia hemisphaerica)
AACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAAT
GATGAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAGATGA
TGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaa
atagaaattATCGTTATTTTTCTACGGTTCtctttttctattgttatttt
tcGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAG
AAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGG
ACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAG
AGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaaattA
TCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTT
TGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGA
AGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGA
CATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTG
GATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCG
TTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGA
AGTTTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAGAAGT
TTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACAT
TCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGTTA
TTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAAGT
TTATtgattatattatttttatctACTTAGATCAACATAAAAGAAGTTTT
CAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCT
CCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCCGAGT
AACAAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtcattt
attaaatttggttcattggatcaaaagttatcctaatttgaaaaaaaagt
tacttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaattttt
attctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCATTACG
TAGTAATTtagaaacataatttttttcaaacttgagcctagaaagggttt
aaaatcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTTTTAG
ATCTCTTTTTAGAATATTCACctgaaagagagaaacttttttgtggcgca
ccagGTATATAATATCACTATATTGAAAAcgatttcattttctttcagcT
TCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTC
GACTGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGATTCA
TGTCCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAAATGT
TGTCAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAACAAAA
TGAATCCTTATTATTGTTattcttgtttttattattattgtatTCAAAGA
TTCTATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCCCATA
GCAAACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACCAGGA
ATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTC
AAGTATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTACTCTT
GAAATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGGTaca
tgaaattttattttcaaaactttttagatATAATCCCTATTTCTTTTCCA
ATTGAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATATCGA
ATCTTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTCTGGC
TCTGGGTCATTTATTATCACAATTGtaattctcttttattttagacAACA
ATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGT
ACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTATGA
AGAGTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTAAAGA
TTATACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTTGTGA
AAATTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTTTAAC
CTACTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTctaata
atttaattttgaattttgcaaaaaattttcaCCCAATACATTTTTATTCC
GAAcccctgcttgttaatttttggaaaattttatttgaaagttatTTTCC
TTGCCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCTGTAA
TACCTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATAATAT
CTATATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGTTTTT
CATGTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAATGTGA
TGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGA
CGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGA
ACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTA
CTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTG
CGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTT
GAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCT
TTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAA
TCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAAT
ATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaa
atattttgttagctttttcctttgttgccatcaaaagataaaaatcaatt
tgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggtttga
gcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058367-exon-scaffold_31-1491911889:114..175TCONS_00058367-exon-scaffold_31-1491911889:114..175Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:114..175TCONS_00058367-exon-scaffold_31-1510915933:114..175Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:114..175TCONS_00058367-exon-scaffold_31-1575043694:114..175Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:416..430TCONS_00058367-exon-scaffold_31-1491911889:416..430Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:416..430TCONS_00058367-exon-scaffold_31-1510915933:416..430Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:416..430TCONS_00058367-exon-scaffold_31-1575043694:416..430Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:924..978TCONS_00058367-exon-scaffold_31-1491911889:924..978Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:924..978TCONS_00058367-exon-scaffold_31-1510915933:924..978Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:924..978TCONS_00058367-exon-scaffold_31-1575043694:924..978Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:1662..1733TCONS_00058367-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:1662..1733TCONS_00058367-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:1662..1733TCONS_00058367-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:2003..2065TCONS_00058367-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:2003..2065TCONS_00058367-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:2003..2065TCONS_00058367-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:2358..2457TCONS_00058367-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:2358..2457TCONS_00058367-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:2358..2457TCONS_00058367-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1491911889:2949..3520TCONS_00058367-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1510915933:2949..3520TCONS_00058367-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058367-exon-scaffold_31-1575043694:2949..3520TCONS_00058367-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:114..3520 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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