TCONS_00058368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058368
Unique NameTCONS_00058368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058368 ID=TCONS_00058368|Name=TCONS_00058368|organism=Clytia hemisphaerica|type=transcript|length=937bp
CATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGA
TGAAATGGACATTCTCCATAATAAGGCTCCGGTCACTCAACAAGATGATG
ATTTGGAGAGTGGATTTGATGATACAGCAGcTTCTATTGCACGCCCTATT
AGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAAC
CAGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAA
AAACATCAGCCTCAAacAACAATTCAATGAAACGCAAaagaaaagaggaa
aagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAA
AACTGATGATAATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTC
ATCTCCAGTGTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATT
AATCTTGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAG
ATTGAACAATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAAT
CGTATTTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTT
ACGAAGACAATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaa
tgaaaacaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGA
CTTTTTTGCACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACC
CCCATGTTGAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATA
AAAACCCTGGTCCGgaagcttatttttcaaatattttgttagctttttcc
tttgttgccatcaaaagataaaaatcaatttgctcAATTTTGGATCACGT
TACCGagtactcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:116..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058368 ID=TCONS_00058368|Name=TCONS_00058368|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at scaffold_31:116..3520+ (Clytia hemisphaerica)
CATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGA
TGAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAGATGATG
ATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaat
agaaattATCGTTATTTTTCTACGGTTCtctttttctattgttatttttc
GAAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAA
GTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGAC
ATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAG
TGGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaaattATC
GTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTG
AAGTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAG
TTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACA
TTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGA
TTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGTT
ATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAAG
TTTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAGAAGTTT
TCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACATTC
TCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTT
GATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGTTATT
TTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAAGTTT
ATtgattatattatttttatctACTTAGATCAACATAAAAGAAGTTTTCA
AAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATTCTCC
ATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGGATTT
GATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCCGAGTAA
CAAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtcatttat
taaatttggttcattggatcaaaagttatcctaatttgaaaaaaaagtta
cttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaatttttat
tctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCATTACGTA
GTAATTtagaaacataatttttttcaaacttgagcctagaaagggtttaa
aatcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTTTTAGAT
CTCTTTTTAGAATATTCACctgaaagagagaaacttttttgtggcgcacc
agGTATATAATATCACTATATTGAAAAcgatttcattttctttcagcTTC
TATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGA
CTGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGATTCATG
TCCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAAATGTTG
TCAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAACAAAATG
AATCCTTATTATTGTTattcttgtttttattattattgtatTCAAAGATT
CTATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCCCATAGC
AAACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACCAGGAAT
TCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAA
GTATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTACTCTTGA
AATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGGTacatg
aaattttattttcaaaactttttagatATAATCCCTATTTCTTTTCCAAT
TGAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATATCGAAT
CTTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTCTGGCTC
TGGGTCATTTATTATCACAATTGtaattctcttttattttagacAACAAT
TCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGTGTAC
GGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTATGAAG
AGTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTAAAGATT
ATACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTTGTGAAA
ATTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTTTAACCT
ACTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTctaataat
ttaattttgaattttgcaaaaaattttcaCCCAATACATTTTTATTCCGA
AcccctgcttgttaatttttggaaaattttatttgaaagttatTTTCCTT
GCCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCTGTAATA
CCTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATAATATCT
ATATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGTTTTTCA
TGTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAATGTGATG
CATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGACG
TCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGAAC
GTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTACT
CAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTGCG
AATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTTGA
ATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCTTT
CTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAATC
GCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAATAT
TCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaaat
attttgttagctttttcctttgttgccatcaaaagataaaaatcaatttg
ctcAATTTTGGATCACGTTACCGagtactcctcttgggattggtttgagc
aaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058368-exon-scaffold_31-1491911889:116..190TCONS_00058368-exon-scaffold_31-1491911889:116..190Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:116..190TCONS_00058368-exon-scaffold_31-1510915933:116..190Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:116..190TCONS_00058368-exon-scaffold_31-1575043694:116..190Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1491911889:924..978TCONS_00058368-exon-scaffold_31-1491911889:924..978Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:924..978TCONS_00058368-exon-scaffold_31-1510915933:924..978Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:924..978TCONS_00058368-exon-scaffold_31-1575043694:924..978Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1491911889:1662..1733TCONS_00058368-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:1662..1733TCONS_00058368-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:1662..1733TCONS_00058368-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1491911889:2003..2065TCONS_00058368-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:2003..2065TCONS_00058368-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:2003..2065TCONS_00058368-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1491911889:2358..2457TCONS_00058368-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:2358..2457TCONS_00058368-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:2358..2457TCONS_00058368-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1491911889:2949..3520TCONS_00058368-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1510915933:2949..3520TCONS_00058368-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058368-exon-scaffold_31-1575043694:2949..3520TCONS_00058368-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:116..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.267842	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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