TCONS_00058376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058376
Unique NameTCONS_00058376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058376 ID=TCONS_00058376|Name=TCONS_00058376|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAG
AAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTCAACAAG
ATGATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAAAGA
AGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGA
CATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGA
GTGGATTTGATGATACAGCAgcTTCTATTGCACGCCCTATTAGGAAAGCC
AAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGGGAACC
AGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAG
CCTCAAacAACAATTCAATGAAACGCAAaagaaaagaggaaaagaaagag
ACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGA
TAATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGT
GTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAA
AATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAA
TAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTT
ATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACA
ATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaa
aaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGC
ACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTG
AGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTG
GTCCGgaagcttatttttcaaatattttgttagctttttcctttgttgcc
atcaaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagta
ctcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:195..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058376 ID=TCONS_00058376|Name=TCONS_00058376|organism=Clytia hemisphaerica|type=transcript|length=3326bp|location=Sequence derived from alignment at scaffold_31:195..3520+ (Clytia hemisphaerica)
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGTTCt
ctttttctattgttatttttcGAAGTTTATtgattatattatttttatct
ACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATAT
GACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGA
AAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaa
tctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTccat
tgttatttttcattcacTTTGAAGTTTATtgattatattatttttatctA
CTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATG
ACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAA
GATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctt
ttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgt
tatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTACTT
AGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACA
GAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctttta
caaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgttat
ttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGA
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttgaa
aacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAACT
TGAATTTcttgggtcatttattaaatttggttcattggatcaaaagttat
cctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttgaaa
atcgacctatcaaatttttattctgaaattttcagtagcgACAGCTTTTG
CACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaaac
ttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTGTA
AAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaagaga
gaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAAAcg
atttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAAGA
TGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTTTT
TTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcgca
tctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAATTT
TCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgttttta
ttattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCCGA
ATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACATC
TCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGG
CGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGTCC
AGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTTAT
ATCTTAAACTACAGGTacatgaaattttattttcaaaactttttagatAT
AATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCATT
TTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTAGT
ATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaattc
tcttttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaaaa
gaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAA
CTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCAAA
AGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTAAA
GCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAATGA
CTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTCTC
AATCTCAATTACTctaataatttaattttgaattttgcaaaaaattttca
CCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaattt
tatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCTTT
TCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATCCA
GAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAGAT
ATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTATT
ATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGT
TCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAA
TATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATA
AAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTAT
ATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAAT
AACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaa
acaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCAC
GTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAG
GAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGT
CCGgaagcttatttttcaaatattttgttagctttttcctttgttgccat
caaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtact
cctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058376-exon-scaffold_31-1491911889:195..245TCONS_00058376-exon-scaffold_31-1491911889:195..245Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:195..245TCONS_00058376-exon-scaffold_31-1510915933:195..245Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:195..245TCONS_00058376-exon-scaffold_31-1575043694:195..245Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:351..430TCONS_00058376-exon-scaffold_31-1491911889:351..430Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:351..430TCONS_00058376-exon-scaffold_31-1510915933:351..430Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:351..430TCONS_00058376-exon-scaffold_31-1575043694:351..430Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:924..978TCONS_00058376-exon-scaffold_31-1491911889:924..978Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:924..978TCONS_00058376-exon-scaffold_31-1510915933:924..978Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:924..978TCONS_00058376-exon-scaffold_31-1575043694:924..978Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:1094..1228TCONS_00058376-exon-scaffold_31-1491911889:1094..1228Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:1094..1228TCONS_00058376-exon-scaffold_31-1510915933:1094..1228Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:1094..1228TCONS_00058376-exon-scaffold_31-1575043694:1094..1228Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:1662..1733TCONS_00058376-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:1662..1733TCONS_00058376-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:1662..1733TCONS_00058376-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:2003..2065TCONS_00058376-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:2003..2065TCONS_00058376-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:2003..2065TCONS_00058376-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:2358..2457TCONS_00058376-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:2358..2457TCONS_00058376-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:2358..2457TCONS_00058376-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1491911889:2949..3520TCONS_00058376-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1510915933:2949..3520TCONS_00058376-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058376-exon-scaffold_31-1575043694:2949..3520TCONS_00058376-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:195..3520 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top