TCONS_00058378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058378
Unique NameTCONS_00058378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058378 ID=TCONS_00058378|Name=TCONS_00058378|organism=Clytia hemisphaerica|type=transcript|length=1122bp
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAG
AAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGATG
ATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAGAGAAGT
TTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACAT
TCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGAT
TTGATGATACAGCAGcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATG
AGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGGGAACCAGGAAT
TCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCAA
acAACAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATT
ATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAG
GTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCG
GCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAATATA
CCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAA
GTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTATATGG
TCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAATAACA
ATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaaacaa
aatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCC
TATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAGGAAG
TCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGg
aagcttatttttcaaatattttgttagctttttcctttgttgccatcaaa
agataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtactcctc
ttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:195..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058378 ID=TCONS_00058378|Name=TCONS_00058378|organism=Clytia hemisphaerica|type=transcript|length=3326bp|location=Sequence derived from alignment at scaffold_31:195..3520+ (Clytia hemisphaerica)
CGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCA
GGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGTTCt
ctttttctattgttatttttcGAAGTTTATtgattatattatttttatct
ACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATAT
GACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGA
AAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaa
tctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTccat
tgttatttttcattcacTTTGAAGTTTATtgattatattatttttatctA
CTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATG
ACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAA
GATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctt
ttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgt
tatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTACTT
AGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACA
GAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctttta
caaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgttat
ttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGA
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttgaa
aacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAACT
TGAATTTcttgggtcatttattaaatttggttcattggatcaaaagttat
cctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttgaaa
atcgacctatcaaatttttattctgaaattttcagtagcgACAGCTTTTG
CACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaaac
ttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTGTA
AAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaagaga
gaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAAAcg
atttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAAGA
TGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTTTT
TTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcgca
tctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAATTT
TCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgttttta
ttattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCCGA
ATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACATC
TCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGG
CGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGTCC
AGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTTAT
ATCTTAAACTACAGGTacatgaaattttattttcaaaactttttagatAT
AATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCATT
TTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTAGT
ATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaattc
tcttttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaaaa
gaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAA
CTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCAAA
AGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTAAA
GCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAATGA
CTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTCTC
AATCTCAATTACTctaataatttaattttgaattttgcaaaaaattttca
CCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaattt
tatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCTTT
TCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATCCA
GAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAGAT
ATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTATT
ATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGT
TCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAA
TATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATA
AAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTAT
ATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAAT
AACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaa
acaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCAC
GTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAG
GAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGT
CCGgaagcttatttttcaaatattttgttagctttttcctttgttgccat
caaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtact
cctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058378-exon-scaffold_31-1491911889:195..245TCONS_00058378-exon-scaffold_31-1491911889:195..245Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:195..245TCONS_00058378-exon-scaffold_31-1510915933:195..245Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:195..245TCONS_00058378-exon-scaffold_31-1575043694:195..245Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:600..731TCONS_00058378-exon-scaffold_31-1491911889:600..731Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:600..731TCONS_00058378-exon-scaffold_31-1510915933:600..731Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:600..731TCONS_00058378-exon-scaffold_31-1575043694:600..731Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:847..978TCONS_00058378-exon-scaffold_31-1491911889:847..978Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:847..978TCONS_00058378-exon-scaffold_31-1510915933:847..978Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:847..978TCONS_00058378-exon-scaffold_31-1575043694:847..978Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:1662..1733TCONS_00058378-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:1662..1733TCONS_00058378-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:1662..1733TCONS_00058378-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:2003..2065TCONS_00058378-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:2003..2065TCONS_00058378-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:2003..2065TCONS_00058378-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:2358..2457TCONS_00058378-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:2358..2457TCONS_00058378-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:2358..2457TCONS_00058378-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1491911889:2949..3520TCONS_00058378-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1510915933:2949..3520TCONS_00058378-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058378-exon-scaffold_31-1575043694:2949..3520TCONS_00058378-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:195..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0139132	0.382321	0	0	0	0	0	0	0.459311	0	0	0	1.19479	0	0.604232	2.35992	0.238095	0.0150335	0.526545	3.80429e-05	0.0418848	1.74262	0	1.12261	0	0	0.712944	0	0.430953	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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