TCONS_00058380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058380
Unique NameTCONS_00058380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058380 ID=TCONS_00058380|Name=TCONS_00058380|organism=Clytia hemisphaerica|type=transcript|length=987bp
TCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGAT
CAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAA
TGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATG
ATTTGGAGAGTGGATTTGATGATACAGCAGcTTCTATTGCACGCCCTATT
AGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAAC
CAGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAA
AAACATCAGCCTCAAacAACAATTCAATGAAACGCAAaagaaaagaggaa
aagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAA
AACTGATGATAATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTC
ATCTCCAGTGTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATT
AATCTTGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAG
ATTGAACAATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAAT
CGTATTTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTT
ACGAAGACAATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaa
tgaaaacaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGA
CTTTTTTGCACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACC
CCCATGTTGAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATA
AAAACCCTGGTCCGgaagcttatttttcaaatattttgttagctttttcc
tttgttgccatcaaaagataaaaatcaatttgctcAATTTTGGATCACGT
TACCGagtactcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:198..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058380 ID=TCONS_00058380|Name=TCONS_00058380|organism=Clytia hemisphaerica|type=transcript|length=3323bp|location=Sequence derived from alignment at scaffold_31:198..3520+ (Clytia hemisphaerica)
TCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGT
GagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGTTCtctt
tttctattgttatttttcGAAGTTTATtgattatattatttttatctACT
TAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGAC
AGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAA
AGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatct
ttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTccattgt
tatttttcattcacTTTGAAGTTTATtgattatattatttttatctACTT
AGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACA
GAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctttta
caaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgttat
ttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTACTTAGA
TCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGAT
GATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatcttttacaa
ataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttt
tcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGATCA
ACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATG
ATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGAT
GATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaatttgaaaac
aacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAAACTTGA
ATTTcttgggtcatttattaaatttggttcattggatcaaaagttatcct
aatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttgaaaatc
gacctatcaaatttttattctgaaattttcagtagcgACAGCTTTTGCAC
GAATAAGAGCATTACGTAGTAATTtagaaacataatttttttcaaacttg
agcctagaaagggtttaaaatcttcatcaaaatcatttccaTTTGTAAAA
GGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaagagagaa
acttttttgtggcgcaccagGTATATAATATCACTATATTGAAAAcgatt
tcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGA
GAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTTTTTTTT
CATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttcgcatct
TGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAATTTTCC
TTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgtttttatta
ttattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGCCGAATT
GAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTACATCTCT
TTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGA
AAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATGTCCAGG
GCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTTTATATC
TTAAACTACAGGTacatgaaattttattttcaaaactttttagatATAAT
CCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCCATTTTG
AGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCTAGTATG
GGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaattctct
tttattttagacAACAATTCAATGAAACGCAAaagaaaagaggaaaagaa
agagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTG
ATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATCAAAAGC
ACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATTAAAGCA
TACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAATGACTG
GTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTTCTCAAT
CTCAATTACTctaataatttaattttgaattttgcaaaaaattttcaCCC
AATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaattttat
ttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGCTTTTCT
AAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGATCCAGAG
GCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAAGATATT
TCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTTATTATA
GGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCC
GGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAATAT
ACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAA
AGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTATATG
GTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAATAAC
AATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaaaca
aaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTC
CTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAGGAA
GTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGTCCG
gaagcttatttttcaaatattttgttagctttttcctttgttgccatcaa
aagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtactcct
cttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058380-exon-scaffold_31-1491911889:198..245TCONS_00058380-exon-scaffold_31-1491911889:198..245Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:198..245TCONS_00058380-exon-scaffold_31-1510915933:198..245Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:198..245TCONS_00058380-exon-scaffold_31-1575043694:198..245Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1491911889:600..731TCONS_00058380-exon-scaffold_31-1491911889:600..731Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:600..731TCONS_00058380-exon-scaffold_31-1510915933:600..731Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:600..731TCONS_00058380-exon-scaffold_31-1575043694:600..731Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1491911889:1662..1733TCONS_00058380-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:1662..1733TCONS_00058380-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:1662..1733TCONS_00058380-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1491911889:2003..2065TCONS_00058380-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:2003..2065TCONS_00058380-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:2003..2065TCONS_00058380-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1491911889:2358..2457TCONS_00058380-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:2358..2457TCONS_00058380-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:2358..2457TCONS_00058380-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1491911889:2949..3520TCONS_00058380-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1510915933:2949..3520TCONS_00058380-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058380-exon-scaffold_31-1575043694:2949..3520TCONS_00058380-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:198..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05137e-07	0	0	5.47849e-05	0	0	0	0	8.08926e-06	0	0	0	0	0	0	0	0.0323425	0	0	0.0531615	2.76447e-05	0	0.842676	0	0	0	6.67918e-05	0	0.230725	5.06882e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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