TCONS_00058384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058384
Unique NameTCONS_00058384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058384 ID=TCONS_00058384|Name=TCONS_00058384|organism=Clytia hemisphaerica|type=transcript|length=280bp
ttttcttttaagatcTTATACACCTAGCACTCCTGCATAAAATTGGTGGA
TGTACAAGATGTCACcagatataaaaaatatatatcatatATCCTATACA
TGtataataaaaaagtgtctCTACAGCGTATTTACAGttaaaatatttct
ctttttcGTATTAAAATATAAAGTACCTAAAATTTACCAAACAGTAGACT
TCCCGGCTATGATATTTCCTTTTCAAAGTTCGTAAACTAAGCAATTATGA
AAAAGTCCCTATAAAAAAACCCGgcctgga
Run BLAST on NCBI

transcript from alignment at scaffold_31:3577..3856

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058384 ID=TCONS_00058384|Name=TCONS_00058384|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_31:3577..3856 (Clytia hemisphaerica)
tccaggcCGGGTTTTTTTATAGGGACTTTTTCATAATTGCTTAGTTTACG
AACTTTGAAAAGGAAATATCATAGCCGGGAAGTCTACTGTTTGGTAAATT
TTAGGTACTTTATATTTTAATACgaaaaagagaaatattttaaCTGTAAA
TACGCTGTAGagacacttttttattataCATGTATAGGATatatgatata
tattttttatatctgGTGACATCTTGTACATCCACCAATTTTATGCAGGA
GTGCTAGGTGTATAAgatcttaaaagaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036774XLOC_036774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058384-exon-scaffold_31-1491911889:3577..3856TCONS_00058384-exon-scaffold_31-1491911889:3577..3856Clytia hemisphaericaexon
TCONS_00058384-exon-scaffold_31-1510915933:3577..3856TCONS_00058384-exon-scaffold_31-1510915933:3577..3856Clytia hemisphaericaexon
TCONS_00058384-exon-scaffold_31-1575043694:3577..3856TCONS_00058384-exon-scaffold_31-1575043694:3577..3856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:3577..3856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97748	0	0.559751	0	0.666685	1.58047	0	0.595032	1.24979	0	0	1.64624	1.97274	1.36581	0.842159	1.20502	2.59785	0	1.05105	1.09985	6.69179	3.49716	1.7005	3.09201	0	0	2.03364	1.4469	2.74356	2.2362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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