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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058392 ID=TCONS_00058392|Name=TCONS_00058392|organism=Clytia hemisphaerica|type=transcript|length=2209bp
CCCTTAGCCAACGCGGGACGCACATGTGCGTCCGCGCCTATATACGAGGG
ACGCACATGTGCGTCCTGAGAGGGAGTCATCTTTGAGCTGAGTTTCTGAG
CTATAGGTTTGTTTATATCCTGATTGGTTGGGATCAGGTGAAAATAGATT
AAATTTCCGTTCTTTTGATACCAACCTTTTGAGTCACGCATGCGCAGAAG
TCTCAGAAAGCCGTCTCAAAGTTACATCATATTTTCGAGTCGCgggaaaa
acaacaaatcatTTGCTAAAAATTATGGAAAGATTTAAGACTTCTTCAGA
GCAAAATGAAGCCATTAAAAACTTTATTAACAACCTCTCAGATGTTGAAG
TGGATGATAACATAGATGAGGGATCTTCTGATGATGACTTTGACAATGAC
GACTACAACCCAGGAGCGGGGAATCAGGACGAGTATCGTAGAAGTGACGT
CTCATCAGATGAGGAGAGTTTGTTGGATACCGATAAAGAAAGACTGACAT
CTGACTCAAACTCTGAGTCAGATGGTGAAGTCAGCATGAGTTCTCTTCCC
TCATCCCCTGTAATACCTAAAACTCCTTCACCTACTCCATCATCCAAGTC
CTCCGAATTACTAACCGATCCCTCGGACATTGAGCGCACCCCGCCCTTGT
CGCCCACTTCATCTCTCCCGGACAAACCAGGTTCTCCCCCGCCTTCGTCG
CCCACTTCATCTCTCCCGGATATACCACGGTCTCCCCCTCCCAAAGAAAA
AGACTCTGATTTTAGTGACTGTGAATTTATTGAAGAAACCAATACACAAA
TAAACACTAATAAGAAAGAAAGGGTCACTCGCTCTACATATAATCAAGCA
AATGCGGAAACATCAGCTTGTCGTGATCCTGATCCAAAAGATGGTGCAAC
CGCTAGCCGTGGTAGAGTTGGTCGTGGTGGCGGAAGAGCTGGTCGACGAG
GTGGTAGAAGAGCTGGTCGTTCTGGTCGTGGCGTAGCAGGTCGTGGCGTA
TCTGGTCGTGGCGTAGCTGGTCGTGGTGTAGCTGGTCGTCGCGTAGCTAG
TCGTGTTACTCGTCGAAGGGGACCCCGCATCCGCGGCCCCGGAATCCCTC
GCCGATATGCTTCAGGTCGTCAAGGACATAGTACCATAAATGATTTTGTT
GAGAACGACACCGACGATGATAATCATGATCTTCAACCTTCTACCGAACA
TGGTACACAGGATTCAGTAGCTGAAGGAAATTTTACCGTCAAAGGTGTCG
TTCGCCGTGCCAAGAGAAAACTTCCTCAATCAAAGAAAACGAATAAAACC
AGTGGACCGAAGAAAGCCAAAACACGTGCTGCTTCTAAaaagaaagatga
aaagaaCTTAGAATTTGTGTGGGATACTAAAAGCAGGGACTACCGTGAAT
TTCCATTTACTGGAGATCTTGGGATAGTGATTGAAACTTACGACCCGACT
TGCCcgttacaaattttgaaagtcTTTCTAACAGATACATTGATTGAGGA
CATCGTGAAGCACACAAATACATATGCTGCTCTGGTTAGAGACCTTCCCG
AGGTCAAGGAAAGAATGGCAAACACCCATAGAAGTCTTTTTGCTTTATGG
ACTGATCTTACCAAGGATGAATTATGGGTCTATTTTTGCTTGCAAATTCT
TATGGGAATGATTCACAAACCCCGATACCACCTTTATTGGAGTAGGAAAT
TCATCATCACCACACCTATCTTCAGTCGTCTTATGAGAAGGGACAGATTT
GAGCAGATTCGAAAGATGATTCACTTCACTGATCCCTTGAGCGAGAATCC
TGAAGCCAGTCTATCAAAGCTTGATACGTTTTTTCAATCGCTCCGCACTA
AATTCCGGGAAGTCTATGTACCCACCCAACACGTTGCCGTCGATGAGTAC
CTCACTCTCTGGAAAGGACGCTTGAGGTTCCGGATGTACATCCCAAACAA
GAGAGAGAGGTATGGCATCAAAATCTACATGCTATGCGAAAGCAGCACTG
GCTACCTTAGTGATTTCATCGTGTACACTGGTGCTGATACTATCTACCCT
GCACCAGACGTACCCTTACCGAAAAACTTTCTTGAGTACACCAACCCATC
CAAAGTTGTCCTATCACTTATGACTGGATACTACAACAAAGGATACAATC
TTGCTCTGGATAATTTGTACACCTCTCCCGAATTACTGAAAGCATTGTAC
AAAAATGGT Run BLAST on NCBI protein sequence of TCONS_00058392-protein >TCONS_00058392-protein ID=TCONS_00058392-protein|Name=TCONS_00058392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp
MERFKTSSEQNEAIKNFINNLSDVEVDDNIDEGSSDDDFDNDDYNPGAGN
QDEYRRSDVSSDEESLLDTDKERLTSDSNSESDGEVSMSSLPSSPVIPKT
PSPTPSSKSSELLTDPSDIERTPPLSPTSSLPDKPGSPPPSSPTSSLPDI
PRSPPPKEKDSDFSDCEFIEETNTQINTNKKERVTRSTYNQANAETSACR
DPDPKDGATASRGRVGRGGGRAGRRGGRRAGRSGRGVAGRGVSGRGVAGR
GVAGRRVASRVTRRRGPRIRGPGIPRRYASGRQGHSTINDFVENDTDDDN
HDLQPSTEHGTQDSVAEGNFTVKGVVRRAKRKLPQSKKTNKTSGPKKAKT
RAASKKKDEKNLEFVWDTKSRDYREFPFTGDLGIVIETYDPTCPLQILKV
FLTDTLIEDIVKHTNTYAALVRDLPEVKERMANTHRSLFALWTDLTKDEL
WVYFCLQILMGMIHKPRYHLYWSRKFIITTPIFSRLMRRDRFEQIRKMIH
FTDPLSENPEASLSKLDTFFQSLRTKFREVYVPTQHVAVDEYLTLWKGRL
RFRMYIPNKRERYGIKIYMLCESSTGYLSDFIVYTGADTIYPAPDVPLPK
NFLEYTNPSKVVLSLMTGYYNKGYNLALDNLYTSPELLKALYKNG Run BLAST on NCBI transcript from alignment at scaffold_310:10358..12768+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058392 ID=TCONS_00058392|Name=TCONS_00058392|organism=Clytia hemisphaerica|type=transcript|length=2411bp|location=Sequence derived from alignment at scaffold_310:10358..12768+ (Clytia hemisphaerica)
CCCTTAGCCAACGCGGGACGCACATGTGCGTCCGCGCCTATATACGAGGG
ACGCACATGTGCGTCCTGAGAGGGAGTCATCTTTGAGCTGAGTTTCTGAG
CTATAGGTTTGTTTATATCCTGATTGGTTGGGATCAGGTGAAAATAGATT
AAATTTCCGTTCTTTTGATACCAACCTTTTGAGTCACGCATGCGCAGAAG
TCTCAGAAAGCCGTCTCAAAGTTACATCATATTTTCGAGTCGCgggaaaa
acaacaaatcatTTGCTAAAAATTATGGAAAGATTTAAGACTTCTTCAGA
GCAAAATGAAGCCATTAAAAACTTTATTAACAACCTCTCAGATGTTGAAG
TGGATGATAACATAGATGAGGGATCTTCTGATGATGGTAAGATTTGTTTA
TGTTcacttttttactcaatttttcctattttttctcaaattttgtggTA
GATTTGCCTTCAGAAGTAATATACCAAGTAAATTTTAGGATCTTGGGACA
AACATGAAGGGAAGGGAAGTATTTAGTGGGCTAATTCTAGTAGTCAGGAG
GCTCAGTTActtagtttttcttttgtttttcctcTAAGACTTTGACAATG
ACGACTACAACCCAGGAGCGGGGAATCAGGACGAGTATCGTAGAAGTGAC
GTCTCATCAGATGAGGAGAGTTTGTTGGATACCGATAAAGAAAGACTGAC
ATCTGACTCAAACTCTGAGTCAGATGGTGAAGTCAGCATGAGTTCTCTTC
CCTCATCCCCTGTAATACCTAAAACTCCTTCACCTACTCCATCATCCAAG
TCCTCCGAATTACTAACCGATCCCTCGGACATTGAGCGCACCCCGCCCTT
GTCGCCCACTTCATCTCTCCCGGACAAACCAGGTTCTCCCCCGCCTTCGT
CGCCCACTTCATCTCTCCCGGATATACCACGGTCTCCCCCTCCCAAAGAA
AAAGACTCTGATTTTAGTGACTGTGAATTTATTGAAGAAACCAATACACA
AATAAACACTAATAAGAAAGAAAGGGTCACTCGCTCTACATATAATCAAG
CAAATGCGGAAACATCAGCTTGTCGTGATCCTGATCCAAAAGATGGTGCA
ACCGCTAGCCGTGGTAGAGTTGGTCGTGGTGGCGGAAGAGCTGGTCGACG
AGGTGGTAGAAGAGCTGGTCGTTCTGGTCGTGGCGTAGCAGGTCGTGGCG
TATCTGGTCGTGGCGTAGCTGGTCGTGGTGTAGCTGGTCGTCGCGTAGCT
AGTCGTGTTACTCGTCGAAGGGGACCCCGCATCCGCGGCCCCGGAATCCC
TCGCCGATATGCTTCAGGTCGTCAAGGACATAGTACCATAAATGATTTTG
TTGAGAACGACACCGACGATGATAATCATGATCTTCAACCTTCTACCGAA
CATGGTACACAGGATTCAGTAGCTGAAGGAAATTTTACCGTCAAAGGTGT
CGTTCGCCGTGCCAAGAGAAAACTTCCTCAATCAAAGAAAACGAATAAAA
CCAGTGGACCGAAGAAAGCCAAAACACGTGCTGCTTCTAAaaagaaagat
gaaaagaaCTTAGAATTTGTGTGGGATACTAAAAGCAGGGACTACCGTGA
ATTTCCATTTACTGGAGATCTTGGGATAGTGATTGAAACTTACGACCCGA
CTTGCCcgttacaaattttgaaagtcTTTCTAACAGATACATTGATTGAG
GACATCGTGAAGCACACAAATACATATGCTGCTCTGGTTAGAGACCTTCC
CGAGGTCAAGGAAAGAATGGCAAACACCCATAGAAGTCTTTTTGCTTTAT
GGACTGATCTTACCAAGGATGAATTATGGGTCTATTTTTGCTTGCAAATT
CTTATGGGAATGATTCACAAACCCCGATACCACCTTTATTGGAGTAGGAA
ATTCATCATCACCACACCTATCTTCAGTCGTCTTATGAGAAGGGACAGAT
TTGAGCAGATTCGAAAGATGATTCACTTCACTGATCCCTTGAGCGAGAAT
CCTGAAGCCAGTCTATCAAAGCTTGATACGTTTTTTCAATCGCTCCGCAC
TAAATTCCGGGAAGTCTATGTACCCACCCAACACGTTGCCGTCGATGAGT
ACCTCACTCTCTGGAAAGGACGCTTGAGGTTCCGGATGTACATCCCAAAC
AAGAGAGAGAGGTATGGCATCAAAATCTACATGCTATGCGAAAGCAGCAC
TGGCTACCTTAGTGATTTCATCGTGTACACTGGTGCTGATACTATCTACC
CTGCACCAGACGTACCCTTACCGAAAAACTTTCTTGAGTACACCAACCCA
TCCAAAGTTGTCCTATCACTTATGACTGGATACTACAACAAAGGATACAA
TCTTGCTCTGGATAATTTGTACACCTCTCCCGAATTACTGAAAGCATTGT
ACAAAAATGGT Coding sequence (CDS) from alignment at scaffold_310:10358..12768+ >TCONS_00058392 ID=TCONS_00058392|Name=TCONS_00058392|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at scaffold_310:10358..12768+ (Clytia hemisphaerica)
ATGGAAAGATTTAAGACTTCTTCAGAGCAAAATGAAGCCATTAAAAACTT
TATTAACAACCTCTCAGATGTTGAAGTGGATGATAACATAGATGAGGGAT
CTTCTGATGATGACTTTGACAATGACGACTACAACCCAGGAGCGGGGAAT
CAGGACGAGTATCGTAGAAGTGACGTCTCATCAGATGAGGAGAGTTTGTT
GGATACCGATAAAGAAAGACTGACATCTGACTCAAACTCTGAGTCAGATG
GTGAAGTCAGCATGAGTTCTCTTCCCTCATCCCCTGTAATACCTAAAACT
CCTTCACCTACTCCATCATCCAAGTCCTCCGAATTACTAACCGATCCCTC
GGACATTGAGCGCACCCCGCCCTTGTCGCCCACTTCATCTCTCCCGGACA
AACCAGGTTCTCCCCCGCCTTCGTCGCCCACTTCATCTCTCCCGGATATA
CCACGGTCTCCCCCTCCCAAAGAAAAAGACTCTGATTTTAGTGACTGTGA
ATTTATTGAAGAAACCAATACACAAATAAACACTAATAAGAAAGAAAGGG
TCACTCGCTCTACATATAATCAAGCAAATGCGGAAACATCAGCTTGTCGT
GATCCTGATCCAAAAGATGGTGCAACCGCTAGCCGTGGTAGAGTTGGTCG
TGGTGGCGGAAGAGCTGGTCGACGAGGTGGTAGAAGAGCTGGTCGTTCTG
GTCGTGGCGTAGCAGGTCGTGGCGTATCTGGTCGTGGCGTAGCTGGTCGT
GGTGTAGCTGGTCGTCGCGTAGCTAGTCGTGTTACTCGTCGAAGGGGACC
CCGCATCCGCGGCCCCGGAATCCCTCGCCGATATGCTTCAGGTCGTCAAG
GACATAGTACCATAAATGATTTTGTTGAGAACGACACCGACGATGATAAT
CATGATCTTCAACCTTCTACCGAACATGGTACACAGGATTCAGTAGCTGA
AGGAAATTTTACCGTCAAAGGTGTCGTTCGCCGTGCCAAGAGAAAACTTC
CTCAATCAAAGAAAACGAATAAAACCAGTGGACCGAAGAAAGCCAAAACA
CGTGCTGCTTCTAAaaagaaagatgaaaagaaCTTAGAATTTGTGTGGGA
TACTAAAAGCAGGGACTACCGTGAATTTCCATTTACTGGAGATCTTGGGA
TAGTGATTGAAACTTACGACCCGACTTGCCcgttacaaattttgaaagtc
TTTCTAACAGATACATTGATTGAGGACATCGTGAAGCACACAAATACATA
TGCTGCTCTGGTTAGAGACCTTCCCGAGGTCAAGGAAAGAATGGCAAACA
CCCATAGAAGTCTTTTTGCTTTATGGACTGATCTTACCAAGGATGAATTA
TGGGTCTATTTTTGCTTGCAAATTCTTATGGGAATGATTCACAAACCCCG
ATACCACCTTTATTGGAGTAGGAAATTCATCATCACCACACCTATCTTCA
GTCGTCTTATGAGAAGGGACAGATTTGAGCAGATTCGAAAGATGATTCAC
TTCACTGATCCCTTGAGCGAGAATCCTGAAGCCAGTCTATCAAAGCTTGA
TACGTTTTTTCAATCGCTCCGCACTAAATTCCGGGAAGTCTATGTACCCA
CCCAACACGTTGCCGTCGATGAGTACCTCACTCTCTGGAAAGGACGCTTG
AGGTTCCGGATGTACATCCCAAACAAGAGAGAGAGGTATGGCATCAAAAT
CTACATGCTATGCGAAAGCAGCACTGGCTACCTTAGTGATTTCATCGTGT
ACACTGGTGCTGATACTATCTACCCTGCACCAGACGTACCCTTACCGAAA
AACTTTCTTGAGTACACCAACCCATCCAAAGTTGTCCTATCACTTATGAC
TGGATACTACAACAAAGGATACAATCTTGCTCTGGATAATTTGTACACCT
CTCCCGAATTACTGAAAGCATTGTACAAAAATGGTATGGAAAGATTTAAG
ACTTCTTCAGAGCAAAATGAAGCCATTAAAAACTTTATTAACAACCTCTC
AGATGTTGAAGTGGATGATAACATAGATGAGGGATCTTCTGATGATGACT
TTGACAATGACGACTACAACCCAGGAGCGGGGAATCAGGACGAGTATCGT
AGAAGTGACGTCTCATCAGATGAGGAGAGTTTGTTGGATACCGATAAAGA
AAGACTGACATCTGACTCAAACTCTGAGTCAGATGGTGAAGTCAGCATGA
GTTCTCTTCCCTCATCCCCTGTAATACCTAAAACTCCTTCACCTACTCCA
TCATCCAAGTCCTCCGAATTACTAACCGATCCCTCGGACATTGAGCGCAC
CCCGCCCTTGTCGCCCACTTCATCTCTCCCGGACAAACCAGGTTCTCCCC
CGCCTTCGTCGCCCACTTCATCTCTCCCGGATATACCACGGTCTCCCCCT
CCCAAAGAAAAAGACTCTGATTTTAGTGACTGTGAATTTATTGAAGAAAC
CAATACACAAATAAACACTAATAAGAAAGAAAGGGTCACTCGCTCTACAT
ATAATCAAGCAAATGCGGAAACATCAGCTTGTCGTGATCCTGATCCAAAA
GATGGTGCAACCGCTAGCCGTGGTAGAGTTGGTCGTGGTGGCGGAAGAGC
TGGTCGACGAGGTGGTAGAAGAGCTGGTCGTTCTGGTCGTGGCGTAGCAG
GTCGTGGCGTATCTGGTCGTGGCGTAGCTGGTCGTGGTGTAGCTGGTCGT
CGCGTAGCTAGTCGTGTTACTCGTCGAAGGGGACCCCGCATCCGCGGCCC
CGGAATCCCTCGCCGATATGCTTCAGGTCGTCAAGGACATAGTACCATAA
ATGATTTTGTTGAGAACGACACCGACGATGATAATCATGATCTTCAACCT
TCTACCGAACATGGTACACAGGATTCAGTAGCTGAAGGAAATTTTACCGT
CAAAGGTGTCGTTCGCCGTGCCAAGAGAAAACTTCCTCAATCAAAGAAAA
CGAATAAAACCAGTGGACCGAAGAAAGCCAAAACACGTGCTGCTTCTAAa
aagaaagatgaaaagaaCTTAGAATTTGTGTGGGATACTAAAAGCAGGGA
CTACCGTGAATTTCCATTTACTGGAGATCTTGGGATAGTGATTGAAACTT
ACGACCCGACTTGCCcgttacaaattttgaaagtcTTTCTAACAGATACA
TTGATTGAGGACATCGTGAAGCACACAAATACATATGCTGCTCTGGTTAG
AGACCTTCCCGAGGTCAAGGAAAGAATGGCAAACACCCATAGAAGTCTTT
TTGCTTTATGGACTGATCTTACCAAGGATGAATTATGGGTCTATTTTTGC
TTGCAAATTCTTATGGGAATGATTCACAAACCCCGATACCACCTTTATTG
GAGTAGGAAATTCATCATCACCACACCTATCTTCAGTCGTCTTATGAGAA
GGGACAGATTTGAGCAGATTCGAAAGATGATTCACTTCACTGATCCCTTG
AGCGAGAATCCTGAAGCCAGTCTATCAAAGCTTGATACGTTTTTTCAATC
GCTCCGCACTAAATTCCGGGAAGTCTATGTACCCACCCAACACGTTGCCG
TCGATGAGTACCTCACTCTCTGGAAAGGACGCTTGAGGTTCCGGATGTAC
ATCCCAAACAAGAGAGAGAGGTATGGCATCAAAATCTACATGCTATGCGA
AAGCAGCACTGGCTACCTTAGTGATTTCATCGTGTACACTGGTGCTGATA
CTATCTACCCTGCACCAGACGTACCCTTACCGAAAAACTTTCTTGAGTAC
ACCAACCCATCCAAAGTTGTCCTATCACTTATGACTGGATACTACAACAA
AGGATACAATCTTGCTCTGGATAATTTGTACACCTCTCCCGAATTACTGA
AAGCATTGTACAAAAATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058392-exon-scaffold_310-1491911889:10358..10743 | TCONS_00058392-exon-scaffold_310-1491911889:10358..10743 | Clytia hemisphaerica | exon |
| TCONS_00058392-exon-scaffold_310-1510915933:10358..10743 | TCONS_00058392-exon-scaffold_310-1510915933:10358..10743 | Clytia hemisphaerica | exon |
| TCONS_00058392-exon-scaffold_310-1575043694:10358..10743 | TCONS_00058392-exon-scaffold_310-1575043694:10358..10743 | Clytia hemisphaerica | exon |
| TCONS_00058392-exon-scaffold_310-1491911889:10946..12768 | TCONS_00058392-exon-scaffold_310-1491911889:10946..12768 | Clytia hemisphaerica | exon |
| TCONS_00058392-exon-scaffold_310-1510915933:10946..12768 | TCONS_00058392-exon-scaffold_310-1510915933:10946..12768 | Clytia hemisphaerica | exon |
| TCONS_00058392-exon-scaffold_310-1575043694:10946..12768 | TCONS_00058392-exon-scaffold_310-1575043694:10946..12768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_310 | supercontig | scaffold_310:10358..12768 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029526 | PGBD |
Blast
BLAST of TCONS_00058392 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 1.861e-44 Identity = 95/285 (33.33%), Postives = 156/285 (54.74%), Query Frame = 2
Query: 1370 WDTKSRDYRE-FPFTGDLGIVIETYDPTCPLQILKVFLTDTLIEDIVKHTNTYAALVRDLPEVKERMANTHRSLFALWTDLTKDELWVYFCLQILMGMIHKPRYHLYWSRKFIITTPIFSRLMRRDRFEQIRKMIHFTDPLS-----ENPEASLSKLDTFFQSLRTKFREVYVPTQHVAVDEYLTLWKGRLRFRMYIPNKRERYGIKIYMLCESSTGYLSDFIVYTGADTIYPAPDVPLPKNFLEYTNPSKVVLSLMTGYYNKGYNLALDNLYTSPELLKALYKN 2206
W ++ R+ + FTG G ++ D T PLQ ++F T+ L+ I + TN AAL+ P + + + W D DEL V+F + +L G++ KP ++WS + ++ TP ++M +RF + + +HF + S + SL K+ F L KF VY P +++AVDE L L+KG L + Y+P KR R+G+K+Y+LCES +GY+ + +V+TG P + L K+ + S++VL+L+ +GY + LDN SP L + L++N
Sbjct: 75 WSARAMIPRQRYDFTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDK-----WKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTG-------PGMNL-KDSADGLKSSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQN 346
The following BLAST results are available for this feature:
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