TCONS_00058396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058396
Unique NameTCONS_00058396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058396 ID=TCONS_00058396|Name=TCONS_00058396|organism=Clytia hemisphaerica|type=transcript|length=522bp
AAGTatctttgtaccaaaaattaGGTTTTTAGCACTTAATGACAAGAAAA
CTAAGATTAGTGCTCACATAAGGGAAAGGACATTAGTAATAAACAAAGCA
GCAATCCAAAATTGGACATGACTTCATGGCTTATTGAAACGAATATTGGT
AGAAAAGATCGCAATAAGACGATAAATATAAATTATCTTGATGTTGACTG
GCCACTTATATCGCAATAAGACGATGCTTATCAAATTACAGCTAGCTGGA
GTCGGGACGGATGGCAGACTACATCGCAATAAGACGATACATATTAAAAG
TGACAGCTAGACGGATTCGGACATCAAATTTTGGATACCATCCCTCTATT
TGACttcaggtttaaaaaagtagTTGTAAGAAGTAAGAAACGGTAACTCT
TAGTTATTAcatgttttacttttttccgTATATCCTTAAATTTTCtcgca
aaataaaaaacaaatgcaaTAAATGTCACTGGTTTAAGGTCGTTGCAGTT
TCTAATCTTTCTTTGAACCCAC
Run BLAST on NCBI

transcript from alignment at scaffold_310:147533..148257+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058396 ID=TCONS_00058396|Name=TCONS_00058396|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at scaffold_310:147533..148257+ (Clytia hemisphaerica)
AAGTatctttgtaccaaaaattaGGTTTTTAGCACTTAATGACAAGAAAA
CTAAGATTAGTGCTCACATAAGGGAAAGGACATTAGTAATAAACAAAGCA
GCAATCCAAAATTGGACATGACTTCATGGCTTATTGAAACGAATATTGGT
AGAAAAGATCGCAATAAGACGATAAATATAAATTATCTTGATGTTGACTG
GCCACTTATATCGCAATAAGACGATGCTTATCAAATTACAGCTAGCTGGA
GTCGGGACGGATGGCAGACTACATCGCAATAAGAGGATAGATATAAAAGT
ATATGTTGCCATACTATAAATCGCAATAAGACGATACGTATTAAAAATAA
ACTGCCAGCTAGCCGGAGTTGGACATCACCAAATGCTAAAGTCTGAACAT
GGGTGGTAGGGAGGCAGACTATAAATCGCAATAAGACGATTGATTTTAAA
TTATCTGTATGTTGGCAGACCATACATCGCAATAAGACGATACATATTAA
AAGTGACAGCTAGACGGATTCGGACATCAAATTTTGGATACCATCCCTCT
ATTTGACttcaggtttaaaaaagtagTTGTAAGAAGTAAGAAACGGTAAC
TCTTAGTTATTAcatgttttacttttttccgTATATCCTTAAATTTTCtc
gcaaaataaaaaacaaatgcaaTAAATGTCACTGGTTTAAGGTCGTTGCA
GTTTCTAATCTTTCTTTGAACCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036785XLOC_036785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058396-exon-scaffold_310-1491911889:147533..147804TCONS_00058396-exon-scaffold_310-1491911889:147533..147804Clytia hemisphaericaexon
TCONS_00058396-exon-scaffold_310-1510915933:147533..147804TCONS_00058396-exon-scaffold_310-1510915933:147533..147804Clytia hemisphaericaexon
TCONS_00058396-exon-scaffold_310-1575043694:147533..147804TCONS_00058396-exon-scaffold_310-1575043694:147533..147804Clytia hemisphaericaexon
TCONS_00058396-exon-scaffold_310-1491911889:148008..148257TCONS_00058396-exon-scaffold_310-1491911889:148008..148257Clytia hemisphaericaexon
TCONS_00058396-exon-scaffold_310-1510915933:148008..148257TCONS_00058396-exon-scaffold_310-1510915933:148008..148257Clytia hemisphaericaexon
TCONS_00058396-exon-scaffold_310-1575043694:148008..148257TCONS_00058396-exon-scaffold_310-1575043694:148008..148257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:147533..148257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.892934	1.10408	0.329942	0.556635	0	0	0	0	0	0	1.20236	0	1.49371	0	0	0.339577	0	0	0	0	0.78688	0.215632	0.0146066	0	0	0	0.783333	0	0	0.139215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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