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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058403 ID=TCONS_00058403|Name=TCONS_00058403|organism=Clytia hemisphaerica|type=transcript|length=1486bp
TTCTGCTTCAATGCTTACTGACAATACACAAGTGGTTCTCATGGATGAAT
GGACGCCGGAATGTCTTGGCTGTGACGATGCTAAAAGAATTCTCCAAGGT
GGTCTGCTGTTTTTACCCCAGAAGCACAAACAAGGCAACCGGATCAGATA
CAACTCTGGATTTTTCTTGACGACAAATGAAATGCCCGACTTTGTAAATG
ATATTGACAACCAAGCAATCGCGACACGTCTTGAGGTCTTCAATTGTGAT
TCACTCCcaaagaaagacaaaaaagtaACACGTTGGCTTCGTCAAAACTG
TATGCAAGTCTTTCATTATCTCGCCGAGGTGTTAAAGGACACGCCACTCT
TCGATAACGATATGGAGGAGACGCTCGAACACGGAGCGGTTTACAATGAT
TTTGACTGCACCCCAATGGAGAGTCTCATGGAAGCGGAAGAAACAGAACA
GTTCTCGTTCTCGCAGTGCAGCCCTCTGAAAACAAGCACGCCAAATGACC
ACCGAGTATCTTCCATTGAAAGCGCTGTGGATTCTGCTGTTATGGATGCG
GACAAAACTGAGGGCGTCCTGTACGATCAACTGCAATGGGAGTCTCCGCA
TTTCGACAATGAATCGGAAACGTGCGATGACGCATACTGCACAAAGGTTT
ACAACCTTCTTACTAACTTTGAAGGTGCCTGGGACGAAATTGTGATCTCC
GTAAACGCTGAAAAGATGTTCCATCGTCGATTGAGGATGAGCTGGGCTCT
TCCCGATTCCGTGTTTGATACATGGCTGTTGAGGAAAGGCTGGCAACGAA
GCTGGTTCGACCTTCACAATTTCTGCCTCCTCTTCCCAGACTATGAGGAC
AACATTCCAAAATCTCCTGAGCCGCTTCGAAAGAGAAACGTGCTGAGCTC
TAGCGATGATGAAATGGTGACGAAAACGAAAAGACAGCGACTTGTTTTTA
CAAGTGACAGTGAAAATGAGGCACTCAAAACCaacaatgaagatgaaaat
gcaGGAAATACTCCACCCCTACATCAGCCCGCTTCAACATCAGAAGAAAT
GGAACAAGACAAACCAGGTGAAACTAACGAAACAAAGGAAGATGATCAAA
AGCAATCCGAGATCGGAGAGGAGTTACCACCTGACAGTAACATGACAAAT
GGCAAAACTGAAGACGAAGATGGCAAAAAGGAACCACAACCAAAAGAAAA
GGAAGGTCAAATTAATGCATCGGACTCGGGTGTTTCGTTTAAAATCTCCG
AAGCAAACCTAGTTTCAGACGAAGACTGAATTCAGACATTTAACTTAATA
AAacgaaaattttaagttttaaaatttttatattttgtaagacGAAAAAC
CTTTTATAGAGCTGAAAAGTCGTGTTTTCAATGTTTTCTCTTCCACTGTT
CTTAGTTATATTGAAAGAGGTATTTCTCGACTTTCGGAACGCGTGCTTTT
GTGCTCAAGTattcgtgttttttaactcgtcaCGTT Run BLAST on NCBI protein sequence of TCONS_00058403-protein >TCONS_00058403-protein ID=TCONS_00058403-protein|Name=TCONS_00058403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
SASMLTDNTQVVLMDEWTPECLGCDDAKRILQGGLLFLPQKHKQGNRIRY
NSGFFLTTNEMPDFVNDIDNQAIATRLEVFNCDSLPKKDKKVTRWLRQNC
MQVFHYLAEVLKDTPLFDNDMEETLEHGAVYNDFDCTPMESLMEAEETEQ
FSFSQCSPLKTSTPNDHRVSSIESAVDSAVMDADKTEGVLYDQLQWESPH
FDNESETCDDAYCTKVYNLLTNFEGAWDEIVISVNAEKMFHRRLRMSWAL
PDSVFDTWLLRKGWQRSWFDLHNFCLLFPDYEDNIPKSPEPLRKRNVLSS
SDDEMVTKTKRQRLVFTSDSENEALKTNNEDENAGNTPPLHQPASTSEEM
EQDKPGETNETKEDDQKQSEIGEELPPDSNMTNGKTEDEDGKKEPQPKEK
EGQINASDSGVSFKISEANLVSDED Run BLAST on NCBI transcript from alignment at scaffold_310:226318..228098- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058403 ID=TCONS_00058403|Name=TCONS_00058403|organism=Clytia hemisphaerica|type=transcript|length=1781bp|location=Sequence derived from alignment at scaffold_310:226318..228098- (Clytia hemisphaerica)
TTCTGCTTCAATGCTTACTGACAATACACAAGTGGTTCTCATGGATGAAT
GGACGCCGGAATGTCTTGGCTGTGACGATGCTAAAAGAATTCTCCAAGGT
AATGCATGTTTTTCTTGATAAAGTTTTATTGCATGTATTGCAAGCTTTAT
TGCATGTATTAAAAGCTTTATTTGACAAAGAAACACAATAGTTTTCGTCT
TTACATAATTGCTTTTTTGATTTCCTTTTAGGTGGTCTGCTGTTTTTACC
CCAGAAGCACAAACAAGGCAACCGGATCAGATACAACTCTGGATTTTTCT
TGACGACAAATGAAATGCCCGACTTTGTAAATGATATTGACAACCAAGCA
ATCGCGACACGTCTTGAGGTCTTCAATTGTGATTCACTCCCAAAGAAAGA
CAAAAAAGTAACACGTAAGTATTGTCTTTCGTCTTTCAGGGTAATAGAAC
GAGCATACCTTGATCAAAACCGACAAGTATTTTGTTATGCTTTTTGATTT
AGCATTTGGAGCATATTCAGTAATTAGATGAACTAGCTGGCCATACTTTG
TCATATCTTTGTCTCACTTTTCTCAGGTTGGCTTCGTCAAAACTGTATGC
AAGTCTTTCATTATCTCGCCGAGGTGTTAAAGGACACGCCACTCTTCGAT
AACGATATGGAGGAGACGCTCGAACACGGAGCGGTTTACAATGATTTTGA
CTGCACCCCAATGGAGAGTCTCATGGAAGCGGAAGAAACAGAACAGTTCT
CGTTCTCGCAGTGCAGCCCTCTGAAAACAAGCACGCCAAATGACCACCGA
GTATCTTCCATTGAAAGCGCTGTGGATTCTGCTGTTATGGATGCGGACAA
AACTGAGGGCGTCCTGTACGATCAACTGCAATGGGAGTCTCCGCATTTCG
ACAATGAATCGGAAACGTGCGATGACGCATACTGCACAAAGGTTTACAAC
CTTCTTACTAACTTTGAAGGTGCCTGGGACGAAATTGTGATCTCCGTAAA
CGCTGAAAAGATGTTCCATCGTCGATTGAGGATGAGCTGGGCTCTTCCCG
ATTCCGTGTTTGATACATGGCTGTTGAGGAAAGGCTGGCAACGAAGCTGG
TTCGACCTTCACAATTTCTGCCTCCTCTTCCCAGACTATGAGGACAACAT
TCCAAAATCTCCTGAGCCGCTTCGAAAGAGAAACGTGCTGAGCTCTAGCG
ATGATGAAATGGTGACGAAAACGAAAAGACAGCGACTTGTTTTTACAAGT
GACAGTGAAAATGAGGCACTCAAAACCAACAATGAAGATGAAAATGCAGG
AAATACTCCACCCCTACATCAGCCCGCTTCAACATCAGAAGAAATGGAAC
AAGACAAACCAGGTGAAACTAACGAAACAAAGGAAGATGATCAAAAGCAA
TCCGAGATCGGAGAGGAGTTACCACCTGACAGTAACATGACAAATGGCAA
AACTGAAGACGAAGATGGCAAAAAGGAACCACAACCAAAAGAAAAGGAAG
GTCAAATTAATGCATCGGACTCGGGTGTTTCGTTTAAAATCTCCGAAGCA
AACCTAGTTTCAGACGAAGACTGAATTCAGACATTTAACTTAATAAAACG
AAAATTTTAAGTTTTAAAATTTTTATATTTTGTAAGACGAAAAACCTTTT
ATAGAGCTGAAAAGTCGTGTTTTCAATGTTTTCTCTTCCACTGTTCTTAG
TTATATTGAAAGAGGTATTTCTCGACTTTCGGAACGCGTGCTTTTGTGCT
CAAGTATTCGTGTTTTTTAACTCGTCACGTT Coding sequence (CDS) from alignment at scaffold_310:226318..228098- >TCONS_00058403 ID=TCONS_00058403|Name=TCONS_00058403|organism=Clytia hemisphaerica|type=CDS|length=3834bp|location=Sequence derived from alignment at scaffold_310:226318..228098- (Clytia hemisphaerica)
GTTGGCTTCGTCAAAACTGTATGCAAGTCTTTCATTATCTCGCCGAGGTG
TTAAAGGACACGCCACTCTTCGATAACGATATGGAGGAGACGCTCGAACA
CGGAGCGGTTTACAATGATTTTGACTGCACCCCAATGGAGAGTCTCATGG
AAGCGGAAGAAACAGAACAGTTCTCGTTCTCGCAGTGCAGCCCTCTGAAA
ACAAGCACGCCAAATGACCACCGAGTATCTTCCATTGAAAGCGCTGTGGA
TTCTGCTGTTATGGATGCGGACAAAACTGAGGGCGTCCTGTACGATCAAC
TGCAATGGGAGTCTCCGCATTTCGACAATGAATCGGAAACGTGCGATGAC
GCATACTGCACAAAGGTTTACAACCTTCTTACTAACTTTGAAGGTGCCTG
GGACGAAATTGTGATCTCCGTAAACGCTGAAAAGATGTTCCATCGTCGAT
TGAGGATGAGCTGGGCTCTTCCCGATTCCGTGTTTGATACATGGCTGTTG
AGGAAAGGCTGGCAACGAAGCTGGTTCGACCTTCACAATTTCTGCCTCCT
CTTCCCAGACTATGAGGACAACATTCCAAAATCTCCTGAGCCGCTTCGAA
AGAGAAACGTGCTGAGCTCTAGCGATGATGAAATGGTGACGAAAACGAAA
AGACAGCGACTTGTTTTTACAAGTGACAGTGAAAATGAGGCACTCAAAAC
CAACAATGAAGATGAAAATGCAGGAAATACTCCACCCCTACATCAGCCCG
CTTCAACATCAGAAGAAATGGAACAAGACAAACCAGGTGAAACTAACGAA
ACAAAGGAAGATGATCAAAAGCAATCCGAGATCGGAGAGGAGTTACCACC
TGACAGTAACATGACAAATGGCAAAACTGAAGACGAAGATGGCAAAAAGG
AACCACAACCAAAAGAAAAGGAAGGTCAAATTAATGCATCGGACTCGGGT
GTTTCGTTTAAAATCTCCGAAGCAAACCTAGTTTCAGACGAAGACTGAGT
GGTCTGCTGTTTTTACCCCAGAAGCACAAACAAGGCAACCGGATCAGATA
CAACTCTGGATTTTTCTTGACGACAAATGAAATGCCCGACTTTGTAAATG
ATATTGACAACCAAGCAATCGCGACACGTCTTGAGGTCTTCAATTGTGAT
TCACTCCCAAAGAAAGACAAAAAAGTAACACTCTGCTTCAATGCTTACTG
ACAATACACAAGTGGTTCTCATGGATGAATGGACGCCGGAATGTCTTGGC
TGTGACGATGCTAAAAGAATTCTCCAAGGTTGGCTTCGTCAAAACTGTAT
GCAAGTCTTTCATTATCTCGCCGAGGTGTTAAAGGACACGCCACTCTTCG
ATAACGATATGGAGGAGACGCTCGAACACGGAGCGGTTTACAATGATTTT
GACTGCACCCCAATGGAGAGTCTCATGGAAGCGGAAGAAACAGAACAGTT
CTCGTTCTCGCAGTGCAGCCCTCTGAAAACAAGCACGCCAAATGACCACC
GAGTATCTTCCATTGAAAGCGCTGTGGATTCTGCTGTTATGGATGCGGAC
AAAACTGAGGGCGTCCTGTACGATCAACTGCAATGGGAGTCTCCGCATTT
CGACAATGAATCGGAAACGTGCGATGACGCATACTGCACAAAGGTTTACA
ACCTTCTTACTAACTTTGAAGGTGCCTGGGACGAAATTGTGATCTCCGTA
AACGCTGAAAAGATGTTCCATCGTCGATTGAGGATGAGCTGGGCTCTTCC
CGATTCCGTGTTTGATACATGGCTGTTGAGGAAAGGCTGGCAACGAAGCT
GGTTCGACCTTCACAATTTCTGCCTCCTCTTCCCAGACTATGAGGACAAC
ATTCCAAAATCTCCTGAGCCGCTTCGAAAGAGAAACGTGCTGAGCTCTAG
CGATGATGAAATGGTGACGAAAACGAAAAGACAGCGACTTGTTTTTACAA
GTGACAGTGAAAATGAGGCACTCAAAACCAACAATGAAGATGAAAATGCA
GGAAATACTCCACCCCTACATCAGCCCGCTTCAACATCAGAAGAAATGGA
ACAAGACAAACCAGGTGAAACTAACGAAACAAAGGAAGATGATCAAAAGC
AATCCGAGATCGGAGAGGAGTTACCACCTGACAGTAACATGACAAATGGC
AAAACTGAAGACGAAGATGGCAAAAAGGAACCACAACCAAAAGAAAAGGA
AGGTCAAATTAATGCATCGGACTCGGGTGTTTCGTTTAAAATCTCCGAAG
CAAACCTAGTTTCAGACGAAGACTGAGTGGTCTGCTGTTTTTACCCCAGA
AGCACAAACAAGGCAACCGGATCAGATACAACTCTGGATTTTTCTTGACG
ACAAATGAAATGCCCGACTTTGTAAATGATATTGACAACCAAGCAATCGC
GACACGTCTTGAGGTCTTCAATTGTGATTCACTCCCAAAGAAAGACAAAA
AAGTAACACTCTGCTTCAATGCTTACTGACAATACACAAGTGGTTCTCAT
GGATGAATGGACGCCGGAATGTCTTGGCTGTGACGATGCTAAAAGAATTC
TCCAAGGTTGGCTTCGTCAAAACTGTATGCAAGTCTTTCATTATCTCGCC
GAGGTGTTAAAGGACACGCCACTCTTCGATAACGATATGGAGGAGACGCT
CGAACACGGAGCGGTTTACAATGATTTTGACTGCACCCCAATGGAGAGTC
TCATGGAAGCGGAAGAAACAGAACAGTTCTCGTTCTCGCAGTGCAGCCCT
CTGAAAACAAGCACGCCAAATGACCACCGAGTATCTTCCATTGAAAGCGC
TGTGGATTCTGCTGTTATGGATGCGGACAAAACTGAGGGCGTCCTGTACG
ATCAACTGCAATGGGAGTCTCCGCATTTCGACAATGAATCGGAAACGTGC
GATGACGCATACTGCACAAAGGTTTACAACCTTCTTACTAACTTTGAAGG
TGCCTGGGACGAAATTGTGATCTCCGTAAACGCTGAAAAGATGTTCCATC
GTCGATTGAGGATGAGCTGGGCTCTTCCCGATTCCGTGTTTGATACATGG
CTGTTGAGGAAAGGCTGGCAACGAAGCTGGTTCGACCTTCACAATTTCTG
CCTCCTCTTCCCAGACTATGAGGACAACATTCCAAAATCTCCTGAGCCGC
TTCGAAAGAGAAACGTGCTGAGCTCTAGCGATGATGAAATGGTGACGAAA
ACGAAAAGACAGCGACTTGTTTTTACAAGTGACAGTGAAAATGAGGCACT
CAAAACCAACAATGAAGATGAAAATGCAGGAAATACTCCACCCCTACATC
AGCCCGCTTCAACATCAGAAGAAATGGAACAAGACAAACCAGGTGAAACT
AACGAAACAAAGGAAGATGATCAAAAGCAATCCGAGATCGGAGAGGAGTT
ACCACCTGACAGTAACATGACAAATGGCAAAACTGAAGACGAAGATGGCA
AAAAGGAACCACAACCAAAAGAAAAGGAAGGTCAAATTAATGCATCGGAC
TCGGGTGTTTCGTTTAAAATCTCCGAAGCAAACCTAGTTTCAGACGAAGA
CTGAGTGGTCTGCTGTTTTTACCCCAGAAGCACAAACAAGGCAACCGGAT
CAGATACAACTCTGGATTTTTCTTGACGACAAATGAAATGCCCGACTTTG
TAAATGATATTGACAACCAAGCAATCGCGACACGTCTTGAGGTCTTCAAT
TGTGATTCACTCCCAAAGAAAGACAAAAAAGTAACACTCTGCTTCAATGC
TTACTGACAATACACAAGTGGTTCTCATGGATGAATGGACGCCGGAATGT
CTTGGCTGTGACGATGCTAAAAGAATTCTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058403-exon-scaffold_310-1575043694:228001..228098 | TCONS_00058403-exon-scaffold_310-1575043694:228001..228098 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1575043694:227685..227867 | TCONS_00058403-exon-scaffold_310-1575043694:227685..227867 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1575043694:226318..227522 | TCONS_00058403-exon-scaffold_310-1575043694:226318..227522 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1510915933:228001..228098 | TCONS_00058403-exon-scaffold_310-1510915933:228001..228098 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1510915933:227685..227867 | TCONS_00058403-exon-scaffold_310-1510915933:227685..227867 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1510915933:226318..227522 | TCONS_00058403-exon-scaffold_310-1510915933:226318..227522 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1491911889:228001..228098 | TCONS_00058403-exon-scaffold_310-1491911889:228001..228098 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1491911889:227685..227867 | TCONS_00058403-exon-scaffold_310-1491911889:227685..227867 | Clytia hemisphaerica | exon |
| TCONS_00058403-exon-scaffold_310-1491911889:226318..227522 | TCONS_00058403-exon-scaffold_310-1491911889:226318..227522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_310 | supercontig | scaffold_310:226318..228098 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011993 | PH_dom-like |
Blast
The following BLAST results are available for this feature:
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