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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058449 ID=TCONS_00058449|Name=TCONS_00058449|organism=Clytia hemisphaerica|type=transcript|length=2240bp
TTTCCGTAACTAAAcacttaaattttgaaactgaagggtcgaaagggttt
aaaatcttcattagaatcattttaatttacttttaccgaaattctcCTCA
GATCTTTGGTtgtagactggataaagtcgaTGTAGGGCTGGgtgtacctc
aaaacccatatctgatgtattttatgaattttgccagatttctttgcctt
tttcgacgaattttcttccatttGTTATAATTCAacattcctttatataa
caaaaagtcatttagacagctaattatcatttttgattactgaaacgaaa
atactgatgcatcatgtaattatgcttctgtttaatttgataggtccatt
tttaacgtttttgagcactttcaaaaactaactttttgatttaattgagc
ataacttttgatctaaagaatcaaatttaataaaatgactcctcaaaatt
taagtctatctttcttctttccgatgaaataagaatggttcttttaaaaa
tgttatatttcgagaaaattagttttaaagagagaaacttttttgtggcg
cacccggtatatgttgaaattatgaaataaaaagtactccaggctcagag
caaagttaagtttccttataaaaaaaaaacgtgtaaacgaTGAGCGAATA
ACTTAACTTAATAATAGCCTGGCCTCTTTTTTTGGGCTCTTGGAGATCAA
AGAGACCGCTAGTGTTCTGTCTGAAAAAACCATATTGGGAGTTTTCGATA
CAACGAACACGTTGAGGATGGTTAAAATTCTGAGGTTTACGACCTAATAA
AAAGGGAAATCGCACTATAAAGTTGCTTGtatgtaaaaaaagaaaagcaa
aaaatgaGTTTTATGTTCCACTTAATTAAAATTTCCACCGATAGCTTTTC
AAAACTCCAATTTGTGTATATTTCAGTTCATGTAAACGACTCTTTATGTC
ACGTGtcctttttttaattgtttcatGACCCCAATTAATAAACTATCCAA
AAATGTTATTATTCATtcttgaaaataagaaacatgatgATCGAGCATTT
TCCACCAAAATAATGATCATTGGTAACACCAGGATGACGCCATATTTCGA
ACCCTTTGTGTTCACTGTTACCATTATTCTCCATACACATTTCTCTTTGT
TTCGGGTGTAACAAAAAtgattttgcatttttcaattcttctttaTTATC
ATGATTCACAGTGAGATTGTTAGGTCCGTCGAAATTACCAACGTTTCTCC
TTttgggaaaaagaaaaagagtggcTTTTGTTGCAGGCATTTCCCATCTt
atgaaaatcattttctttcctTCTGAATTCACATTTACTTGTACTTTATT
TTCCAACAAACCAGAGATAGCTTCAAACCACTTCTGATAAGATGCATAAA
GATTTAAAACAGATTTTTTGCCAAGGAAAAATTCATTGNTTCTAACAAAA
CAGAGATAGTTTCATACCACTTCTGATAAGATGCGTAAAGATTTAATGCG
GATTTTCTGCCAAGGAAATATTCATTAACACCCCAAATCAATTTATCTTC
CTTTGTAGCAACAATTGATTTTTCTGGCTTTTTCATCGCTTCTGCCATAC
TGGCGTTAAtgcttttcaatatttcaatttcGTGACGAAGTGCTTGGATC
GCCAGCTCTTTCTCTCTTTCCATCTGTTCGAGTTTGATCTTATTAGTATT
CTCCAAATCCTTGACTTTCAACTTGAATTCGTTTTCTTTGGCAGCAATTT
GGTTCTTCATTTCAGCAAGCTTGGTTTGGTACTCGTGCTCTTTTGCCAGA
GTTGCTTTCTCCATTtcattgattttcattttggatTCATTTTCCTTGGC
AGCAATCTCCTTGTCTTTTGCAACCATTTCCTTGTCTTTATCGGTCAGTT
TGTTTCGAAACTCTTTCTCCTGTTTCAGCATTTCTTTCTCCAGTTCCAGG
GTTTTGATACGATTTTCAAATGTCAATTTTTGAATCTGTTTCTCGTGTTT
CTCTTTAAGTTTTTCAATCTCGATACTATCAGTATTCCTGGTGACATTTC
TTCCAGTTGCGCTATGTGCCAAGTTGCGTTCATCGCCATGTGCAGAatcc
attttatttttgttttgacctAATCATGGAAAAGAAATAGAAGATGAGTT
cacttaagagccattttttttaagagtcttcagggtgtgatacctcaccc
tcttggattttgctgaaatttagaccaaatgatctatcac Run BLAST on NCBI transcript from alignment at scaffold_311:554668..557060+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058449 ID=TCONS_00058449|Name=TCONS_00058449|organism=Clytia hemisphaerica|type=transcript|length=2393bp|location=Sequence derived from alignment at scaffold_311:554668..557060+ (Clytia hemisphaerica)
TTTCCGTAACTAAAcacttaaattttgaaactgaagggtcgaaagggttt
aaaatcttcattagaatcattttaatttacttttaccgaaattctcCTCA
GATCTTTGGTtgtagactggataaagtcgaTGTAGGGCTGGgtgtacctc
aaaacccatatctgatgtattttatgaattttgccagatttctttgcctt
tttcgacgaattttcttccatttGTTATAATTCAacattcctttatataa
caaaaagtcatttagacagctaattatcatttttgattactgaaacgaaa
atactgatgcatcatgtaattatgcttctgtttaatttgataggtccatt
tttaacgtttttgagcactttcaaaaactaactttttgatttaattgagc
ataacttttgatctaaagaatcaaatttaataaaatgactcctcaaaatt
taagtctatctttcttctttccgatgaaataagaatggttcttttaaaaa
tgttatatttcgagaaaattagttttaaagagagaaacttttttgtggcg
cacccggtatatgttgaaattatgaaataaaaagtactccaggctcagag
caaagttaagtttccttataaaaaaaaaacgtgtaaacgaTGAGCGAATA
ACTTAACTTAATAATAGCCTGGCCTCTTTTTTTGGGCTCTTGGAGATCAA
AGAGACCGCTAGTGTTCTGTCTGAAAAAACCATATTGGGAGTTTTCGATA
CAACGAACACGTTGAGGATGGTTAAAATTCTGAGGTTTACGACCTAATAA
AAAGGGAAATCGCACTATAAAGTTGCTTGtatgtaaaaaaagaaaagcaa
aaaatgaGTTTTATGTTCCACTTAATTAAAATTTCCACCGATAGCTTTTC
AAAACTCCAATTTGTGTATATTTCAGTTCATGTAAACGACTCTTTATGTC
ACGTGtcctttttttaattgtttcatGACCCCAATTAATAAACTATCCAA
AAATGTTATTATTCATtcttgaaaataagaaacatgatgATCGAGCATTT
TCCACCAAAATAATGATCATTGGTAACACCAGGATGACGCCATATTTCGA
ACCCTTTGTGTTCACTGTTACCATTATTCTCCATACACATTTCTCTTTGT
TTCGGGTGTAACAAAAAtgattttgcatttttcaattcttctttaTTATC
ATGATTCACAGTGAGATTGTTAGGTCCGTCGAAATTACCAACGTTTCTCC
TTttgggaaaaagaaaaagagtggcTTTTGTTGCAGGCATTTCCCATCTt
atgaaaatcattttctttcctTCTGAATTCACATTTACTTGTACTTTATT
TTCCAACAAACCAGAGATAGCTTCAAACCACTTCTGATAAGATGCATAAA
GATTTAAAACAGATTTTTTGCCAAGGAAAAATTCATTGNTTCTAACAAAA
CAGAGATAGTTTCATACCACTTCTGATAAGATGCGTAAAGATTTAATGCG
GATTTTCTGCCAAGGAAATATTCATTAACACCCCAAATCAATTTATCTTC
CTTTGTAGCAACAATTGATTTTTCTGGCTTTTTCATCGCTTCTGCCATAC
TGGCGTTAAtgcttttcaatatttcaatttcGTGACGAAGTGCTTGGATC
GCCAGCTCTTTCTCTCTTTCCATCTGTTCGAGTTTGATCTTATTAGTATT
CTCCAAATCCTTGACTTTCAACTTGAATTCGTTTTCTTTGGCAGCAATTT
GGTTCTTCATTTCAGCAAGCTTGGTTTGGTACTCGTGCTCTTTTGCCAGA
GTTGCTTTCTCCATTtcattgattttcattttggatTCATTTTCCTTGGC
AGCAATCTCCTTGTCTTTTGCAACCATTTCCTTGTCTTTATCGGTCAGTT
TGTTTCGAAACTCTTTCTCCTGTTTCAGCATTTCTTTCTCCATTTCTTGA
TCAACCACACCGCCCTTAGCCTCCATCTCATGGGCGGTCTTCAACTTGAC
CAGTTCAAGTTCATGTGTTAACGATTGATTGTCCTTTTCAAGCTGCAAAA
TCTTCATCTTCTGCTCTTTATCCTGTTTGGACATTTCTTTCTCCAGTTCC
AGGGTTTTGATACGATTTTCAAATGTCAATTTTTGAATCTGTTTCTCGTG
TTTCTCTTTAAGTTTTTCAATCTCGATACTATCAGTATTCCTGGTGACAT
TTCTTCCAGTTGCGCTATGTGCCAAGTTGCGTTCATCGCCATGTGCAGAa
tccattttatttttgttttgacctAATCATGGAAAAGAAATAGAAGATGA
GTTcacttaagagccattttttttaagagtcttcagggtgtgatacctca
ccctcttggattttgctgaaatttagaccaaatgatctatcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058449-exon-scaffold_311-1491911889:554668..556596 | TCONS_00058449-exon-scaffold_311-1491911889:554668..556596 | Clytia hemisphaerica | exon |
| TCONS_00058449-exon-scaffold_311-1510915933:554668..556596 | TCONS_00058449-exon-scaffold_311-1510915933:554668..556596 | Clytia hemisphaerica | exon |
| TCONS_00058449-exon-scaffold_311-1575043694:554668..556596 | TCONS_00058449-exon-scaffold_311-1575043694:554668..556596 | Clytia hemisphaerica | exon |
| TCONS_00058449-exon-scaffold_311-1491911889:556750..557060 | TCONS_00058449-exon-scaffold_311-1491911889:556750..557060 | Clytia hemisphaerica | exon |
| TCONS_00058449-exon-scaffold_311-1510915933:556750..557060 | TCONS_00058449-exon-scaffold_311-1510915933:556750..557060 | Clytia hemisphaerica | exon |
| TCONS_00058449-exon-scaffold_311-1575043694:556750..557060 | TCONS_00058449-exon-scaffold_311-1575043694:556750..557060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:554668..557060 + |
Blast
The following BLAST results are available for this feature:
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