TCONS_00058486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058486
Unique NameTCONS_00058486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058486 ID=TCONS_00058486|Name=TCONS_00058486|organism=Clytia hemisphaerica|type=transcript|length=1564bp
CTTCATTGCGGTATACAATCATTCAATTCCAatgactttcccttctcttT
CTAGATTAGAAATGAATAAGCAAATTTTAACTTCAATAAACAGAATAGCA
AACAgacagattttttcaaaacattcagcAGTTAATTTATTACAACAAAC
TAAGTTCACGTCAAGACACATACATCATCAATTCAAAAGGGGATATGTCA
ATACACAAGGAAATCCTAATGGATGGAAAATTGAATGGTTCTACATCCCT
GCTGGTGTAGGATTTGGTGTCATTGCGTTGATTCAAATCAGACATATTTG
GAGGAGGAAACAACAACAGAACATAGTTGTTGAAATTCCATATGAAGATA
AAGCCGCTGCATTTGTATTCAAGCAGTGGCAGGTTGATTTGCTGCGTAAA
CTTCCCACAAGAGTGTTATCAAGAGCATGGGGTTACATGGCTGATTGTCA
TCTACCAGTCTGGATGAGAAAACCATTGATCAACTCTTACTCGTACATGT
TTGATTGTAACCTTGGCGAGGCGATGCAAAGTGATGTTACAAAATATGAG
ACATTCAATAAGTTCTTCTCCAGGAAACTTAAGCCAGGAATGAGATTGGC
TGACAAAAAAGCTGCAGTGGTATCACCTGCAGACAGCTCCGTGTTAACTT
TTGGGACAATGAACACTCCGACATTTGAGATTGGTCAAGTCAAAGGATTA
ACATACCCTCTTTCTACATTCGTTGGATCTAGAcatcctttcaataaaaa
tgtCACTTCTGCTTTTTCTGgaaaaaagcAGATATTTTCACCGGGGACAT
GTACAGTGGATGAAGATGAGTACAAATTATGTTATTGTACATTGTATTTG
GCACCAGGAGATTACCATTGGTTCCACTCGCCCACTGAATGGACCATTGA
ACACAGGAGACACATCCCGGGTGACTTGTTTTCAGTCAATCCACGTGCAT
TGAAGTCAATCAATggtattttcaatttcaacgaACGTGTTTTGTTATCA
GGGCATTGGGAACATGGACCCTTTTTATATGCAGCAGTTGGTGCTTATAA
TGTGGGATCTATCAAACTTGATATTCCTATGGACAGGGATTTACAAACTA
ATAAATCTGGTTCGATTGGACCTCACAAAGATCGTTTATACAGTACTGGG
TACTTGTCCAAACGTGGTGACAGCGTTGGAAATTTTTTACTTGGATCGTC
CATAGTTTTGATATTCAGTGCACCTAAGAACTTTCAATTTGCAGTTGAAC
CTGGACAGAAAGTCCAATATGGACAAGCTTTAGGATACATCGTTGAAGAC
AAGGTAGCTGGTGGCTAAGcttgttgtattttgttttattttgtttttgg
acaataacttttttataaattgtatattttttctttattaaaatgaTGCA
CTTATTAccattttttctttgtgttttcttcCTTGTCACAAGGTGACCGT
TTTGAGACAGTTCCTTTTGACAAAGAGAAAGTTCTATGAGGAAATTGTTG
ATAGGAATAAGGTACTTcctatcaaaaacattttttgtggGAGTGTCGTC
CTTGAGTTCCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00058486-protein

>TCONS_00058486-protein ID=TCONS_00058486-protein|Name=TCONS_00058486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
FIAVYNHSIPMTFPSLSRLEMNKQILTSINRIANRQIFSKHSAVNLLQQT
KFTSRHIHHQFKRGYVNTQGNPNGWKIEWFYIPAGVGFGVIALIQIRHIW
RRKQQQNIVVEIPYEDKAAAFVFKQWQVDLLRKLPTRVLSRAWGYMADCH
LPVWMRKPLINSYSYMFDCNLGEAMQSDVTKYETFNKFFSRKLKPGMRLA
DKKAAVVSPADSSVLTFGTMNTPTFEIGQVKGLTYPLSTFVGSRHPFNKN
VTSAFSGKKQIFSPGTCTVDEDEYKLCYCTLYLAPGDYHWFHSPTEWTIE
HRRHIPGDLFSVNPRALKSINGIFNFNERVLLSGHWEHGPFLYAAVGAYN
VGSIKLDIPMDRDLQTNKSGSIGPHKDRLYSTGYLSKRGDSVGNFLLGSS
IVLIFSAPKNFQFAVEPGQKVQYGQALGYIVEDKVAGG
Run BLAST on NCBI

transcript from alignment at scaffold_311:1164716..1169633+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058486 ID=TCONS_00058486|Name=TCONS_00058486|organism=Clytia hemisphaerica|type=transcript|length=4918bp|location=Sequence derived from alignment at scaffold_311:1164716..1169633+ (Clytia hemisphaerica)
CTTCATTGCGGTATACAATCATTCAATTCCAatgactttcccttctcttT
CTAGATTAGAAATGAATAAGCAAATTTTAACTTCAATAAACAGAATAGCA
AACAgacagattttttcaaaacattcagcAGTTAATTTATTACAACAAAC
TAAGTTCACGTCAAGACACATACATCATCAATTCAAAAGGGGTATAATTT
CGTTGACAAGTTTCTATAATTTTACTTCTTTCAGCTTCTTTCCTCCGTAG
TTAAAATGCCATTTGCTACGGActcaaaatatctaaatttttaaaattga
tatcATAAGAAATAGGATTTCTGTAGTTCTTTTCATCCTTCTTTAGGATA
TGTCAATACACAAGGAAATCCTAATGGATGGAAAATTGAATGGTTCTACA
TCCCTGCTGGTGTAGGATTTGGTGTCATTGCGTTGATTCAAATCAGACAT
ATTTGGAGGAGGAAACAACAACAGAACATAGTTGTTGAAATTCCATATGA
AGATAAAGCCGCTGCATTTGTATTCAAGCAGTGGCAGGTATTGGAGCTAA
CAATAATTAATGGGTTGTCTCAAATTGATATTTTGTGTAGTTTCTTTTTT
CTAGATTTCATAATAATTCATACATGGTGTTAGGTACAAAAAGGTTGTAC
AAGAATTTTAAAAACAGAAATTAAGTAATAGTCTGCAATTTTCTACGCCA
TTATGATATAAGCTTCAAttgcaaaaacttcaaaaagacTCCAGGGGTCT
TATTGAGGCCCAGTGAACGGCAAATTTCGTTGGTTTCAAGGcacaaaaaa
ttgcattttgctGGTCTTAAAATTTGGTTAGCCACTTGGGCTTACTACTA
AGAAATTACCAGCCTTGAATTTATTCGCTGGTGTTAATCTTTTATTCCCT
AGTCTGTTCCTCTTTTGACAGGTTGATTTGCTGCGTAAACTTCCCACAAG
AGTGTTATCAAGAGCATGGGGTTACATGGCTGATTGTCATCTACCAGTCT
GGATGAGAAAACCATTGATCAACTCTTACTCGTACATGTTTGATTGTAAC
CTTGGCGAGGCGATGCAAAGTGATGTTACAAAATATGAGACATTCAATAA
GTTCTTCTCCAGGAAACTTAAGCCAGGAATGAGATTGGCTGACAAAAAAG
CTGCAGTGGTATATTATGACTAATCTGTCACCTTTTCTGGAAAATAATAT
TCTGTTGCTCACACcattaaaatcagaaaaacttaagaacaaacCAAGAA
TTGTCATGACCGCAGATTTACTATTACTTTATATTTATTTCAGAAAACGC
TAcgtagggtagatcgtcaactcccatttttagcatgatgtcaaaaaatt
ctatttaatctattgtaagacattttgcgcaatttttaacctcctaggtc
aaaaatccagcattccccaggggggtctttgattcccactaaagcgaaaa
atgagtaaaaatggatttttttgcccattttaagactataacAGGCCAGG
aaatggtcaaaatggtttctaaatggtgtttTGTACTAATATTtaacata
aaaagacaaaataaccccagcgagatcgctcaatgtttcaatttcaggct
aaaaaggccgATTTTCTCGGATaatgggtagcaaaatgcatgaaagcagc
atttttgaggacccacaacttttaaactttttaaggtacacacttgaaat
tttcagcaatgaaacacttcagagaaaactccaggaaaaatcaatcttga
gttttcaaaagtttcctataaatccataatggcgccctagaaattgagtt
ttcatgctagatgccaatatttcaagctaaaacttggttttcttgggcta
aaatctcaaaaatgatttcaaatggtgttctgaaatctttggatcttgga
agtattctgaaaatactctgggagaatcaaaatggtttgggtcagaaatt
tGCCTAAGTCTGCCATTATTGTATTGCATTTCCCACTAAAACGCtatatt
tagagttaaagtccaATTTTcgcaggctaaaatctcaaaaatggtttcaa
atggtatcctgaaattttttggtgttgaaagtattctggatatactctgg
gagaaccaaagTGGTTCGGGTTAGAGATTTCAGGacccttttgaattttt
ttactttgccatttgacgatctaccctacgAGCTTTTATTAGCCACAAAg
taaaagaataattttaacTTTAAGTAATTTTACTTTGACAATATGATATG
AGATAAGTTAAATTCTCAGTAGCAACTTTAACTGATATTATCTAAAGCTG
TTATTCTAACATCACTGACCAGATGGTTATTGCTTATCAATCTTCTTTTT
ACTTTACTTTTCCTCTAGGTATCACCTGCAGACAGCTCCGTGTTAACTTT
TGGGACAATGAACACTCCGACATTTGAGATTGGTCAAGTCAAAGGATTAA
CATACCCTCTTTCTACATTCGTTGGATCTAGAcatcctttcaataaaaat
gtCACTTCTGCTTTTTCTGGTACCCTTTTCTTTCAATTCCACCTTAACTT
GGCATAATCTTCTCAAGAAAAGGGTCTATATTTTTCATTCCTGTCTGTTT
ATGCTTGCTTTACACATAAGTATGTTCTTAAAATAATCTTTGTCAGCACT
GTCTATGCTAGGAAGAAAATGGCAAATCTTGTCCTGTAGTCTATGATACA
ATGGAGTCTCTATAACACGAACATGTACAGGGAACACCAATTTGATTGAG
TTTAGGAAATTTCTGAGTCAAGGAGTAAGATTTATAAGGCATTAACCGAA
GGGACTATAAACCTTGTTCGATTTAAGGTCACATTCGATTTATAGAGCTT
TAAGTTAAAGAAACTTCACCGTATTTTTATTGATATTcctcttctttttt
tccaggaaaaaagcAGATATTTTCACCGGGGACATGTACAGTGGATGAAG
ATGAGTACAAATTATGTTATTGTACATTGTATTTGGCACCAGGAGATTAC
CATTGGTTCCACTCGCCCACTGAATGGACCATTGAACACAGGAGACACAT
CCCGGGTACTCTTCAGGCCTCTCAAAGAGGAAATTATTTGCTGTACTTGT
ATAATAAGGACTTGTCTCTATAAACGATGCATGATGGCATCATTTGTTAG
CAATCTTTTTCAAAGAAGTGTACTGAAGGGCCAAACGAATAGACCTTATt
ggagtttttaaaaaaagcaatgCATTGTGGGTTTGTTTCGGggattacaa
tagaaatctcttaggaattcctcaagggaattctattgtaatgccCCCGA
AACAAACCCACAATGCagcgctgttttagaaaaatcaatcaaccgataag
atctattggtTCATTATTTTGGTTGAGCAATGAAAATAGTGAACTAGCGG
AGTTATTTTGAAATTACCCAAGGACACATGAAATAAAGGTTATAATGAAA
ATAGTTTCGTAACAATCGAAAATTTGTTATAACCTTTCTTTTTTGCTAGG
TGACTTGTTTTCAGTCAATCCACGTGCATTGAAGTCAATCAATggtattt
tcaatttcaacgaACGTGTTTTGTTATCAGGGCATTGGGAACATGGACCC
TTTTTATATGCAGCAGTTGGTGCTTATAATGTGGGATCTATCAAACTTGA
TATTCCTATGGACAGGGTATGGATAATTTCGTTCGGATTCAATTATTAAG
TACTTTTCAACTAGATCTTTTAGTCTTATTCCAgagatttttcagatttc
agaTTACGCCTACCTttccaaaaactgcctaaatgacaaaaaaatcagTA
GTGCTGCGGTTACAGCCATTTTGAAGTAAAACAAAACAGAGCTCTGGTAC
ATTGAAAGTGTTTCTTATGTcaggtcaaaatatttttataatttccaTTT
TATGCGAAAAATAGGTCTTAATTTGAATGTTGAGTtccattttatgcaaa
aaatagGTCTTAATTTGAATGCTGAGTTCCATTTTATGCGAAAAATAGGT
CTTAATTTGAATGTCGAGcaaacttttggaaaaatagtCGTATACTATTG
CCTTGAATTGAGTAGTTTTCGTAACAAGGAAAGTTGTGATAGCAtaaaga
aatttgagaaaaatgttCCGTGATTTTTTTGCTGACCAGGTTTTGTTctt
gatttttatttaaaacacttaaggcccattcgccaattttggtgcaattt
ggtggagtttattttggcgatttaataaaatttttaatatttggcgagaa
ttaaatTTGGCTAACGAtccatttttgttcaatattttagctgaaaaaag
aggaaaaaaaggcTTTTGAGGAGAAATAGAAacgaaattgaaataaaatt
aaatttggcgagaatttatttgggcgaatgacctataaatttctttccgc
caaattCCCTGTTTGATTATTGATTACCGTTTTGATTTCAGGATTTACAA
ACTAATAAATCTGGTTCGATTGGACCTCACAAAGATCGTTTATACAGTAC
TGGGTACTTGTCCAAACGTGGTGACAGCGTTGGAAATTTTTTACTTGGAT
CGTCCATAGTTTTGATATTCAGTGCACCTAAGAACTTTCAATTTGCAGTT
GAACCTGGACAGAAAGTCCAATATGGACAAGCTTTAGGATACATCGTTGA
AGACAAGGTAGCTGGTGGCTAAGcttgttgtattttgttttattttgttt
ttggacaataacttttttataaattgtatattttttctttattaaaatga
TGCACTTATTAccattttttctttgtgttttcttcCTTGTCACAAGGTGA
CCGTTTTGAGACAGTTCCTTTTGACAAAGAGAAAGTTCTATGAGGAAATT
GTTGATAGGAATAAGGTACTTcctatcaaaaacattttttgtggGAGTGT
CGTCCTTGAGTTCCCTGG

Coding sequence (CDS) from alignment at scaffold_311:1164716..1169633+

>TCONS_00058486 ID=TCONS_00058486|Name=TCONS_00058486|organism=Clytia hemisphaerica|type=CDS|length=9219bp|location=Sequence derived from alignment at scaffold_311:1164716..1169633+ (Clytia hemisphaerica)
TTCATTGCGGTATACAATCATTCAATTCCAatgactttcccttctcttTC
TAGATTAGAAATGAATAAGCAAATTTTAACTTCAATAAACAGAATAGCAA
ACAgacagattttttcaaaacattcagcAGTTAATTTATTACAACAAACT
AAGTTCACGTCAAGACACATACATCATCAATTCAAAAGGGGATATGTCAA
TACACAAGGAAATCCTAATGGATGGAAAATTGAATGGTTCTACATCCCTG
CTGGTGTAGGATTTGGTGTCATTGCGTTGATTCAAATCAGACATATTTGG
AGGAGGAAACAACAACAGAACATAGTTGTTGAAATTCCATATGAAGATAA
AGCCGCTGCATTTGTATTCAAGCAGTGGCAGGTTGATTTGCTGCGTAAAC
TTCCCACAAGAGTGTTATCAAGAGCATGGGGTTACATGGCTGATTGTCAT
CTACCAGTCTGGATGAGAAAACCATTGATCAACTCTTACTCGTACATGTT
TGATTGTAACCTTGGCGAGGCGATGCAAAGTGATGTTACAAAATATGAGA
CATTCAATAAGTTCTTCTCCAGGAAACTTAAGCCAGGAATGAGATTGGCT
GACAAAAAAGCTGCAGTGGTATCACCTGCAGACAGCTCCGTGTTAACTTT
TGGGACAATGAACACTCCGACATTTGAGATTGGTCAAGTCAAAGGATTAA
CATACCCTCTTTCTACATTCGTTGGATCTAGAcatcctttcaataaaaat
gtCACTTCTGCTTTTTCTGgaaaaaagcAGATATTTTCACCGGGGACATG
TACAGTGGATGAAGATGAGTACAAATTATGTTATTGTACATTGTATTTGG
CACCAGGAGATTACCATTGGTTCCACTCGCCCACTGAATGGACCATTGAA
CACAGGAGACACATCCCGGGTGACTTGTTTTCAGTCAATCCACGTGCATT
GAAGTCAATCAATggtattttcaatttcaacgaACGTGTTTTGTTATCAG
GGCATTGGGAACATGGACCCTTTTTATATGCAGCAGTTGGTGCTTATAAT
GTGGGATCTATCAAACTTGATATTCCTATGGACAGGGATTTACAAACTAA
TAAATCTGGTTCGATTGGACCTCACAAAGATCGTTTATACAGTACTGGGT
ACTTGTCCAAACGTGGTGACAGCGTTGGAAATTTTTTACTTGGATCGTCC
ATAGTTTTGATATTCAGTGCACCTAAGAACTTTCAATTTGCAGTTGAACC
TGGACAGAAAGTCCAATATGGACAAGCTTTAGGATACATCGTTGAAGACA
AGGTAGCTGGTGGCTAATTCATTGCGGTATACAATCATTCAATTCCAatg
actttcccttctcttTCTAGATTAGAAATGAATAAGCAAATTTTAACTTC
AATAAACAGAATAGCAAACAgacagattttttcaaaacattcagcAGTTA
ATTTATTACAACAAACTAAGTTCACGTCAAGACACATACATCATCAATTC
AAAAGGGGATATGTCAATACACAAGGAAATCCTAATGGATGGAAAATTGA
ATGGTTCTACATCCCTGCTGGTGTAGGATTTGGTGTCATTGCGTTGATTC
AAATCAGACATATTTGGAGGAGGAAACAACAACAGAACATAGTTGTTGAA
ATTCCATATGAAGATAAAGCCGCTGCATTTGTATTCAAGCAGTGGCAGGT
TGATTTGCTGCGTAAACTTCCCACAAGAGTGTTATCAAGAGCATGGGGTT
ACATGGCTGATTGTCATCTACCAGTCTGGATGAGAAAACCATTGATCAAC
TCTTACTCGTACATGTTTGATTGTAACCTTGGCGAGGCGATGCAAAGTGA
TGTTACAAAATATGAGACATTCAATAAGTTCTTCTCCAGGAAACTTAAGC
CAGGAATGAGATTGGCTGACAAAAAAGCTGCAGTGGTATCACCTGCAGAC
AGCTCCGTGTTAACTTTTGGGACAATGAACACTCCGACATTTGAGATTGG
TCAAGTCAAAGGATTAACATACCCTCTTTCTACATTCGTTGGATCTAGAc
atcctttcaataaaaatgtCACTTCTGCTTTTTCTGgaaaaaagcAGATA
TTTTCACCGGGGACATGTACAGTGGATGAAGATGAGTACAAATTATGTTA
TTGTACATTGTATTTGGCACCAGGAGATTACCATTGGTTCCACTCGCCCA
CTGAATGGACCATTGAACACAGGAGACACATCCCGGGTGACTTGTTTTCA
GTCAATCCACGTGCATTGAAGTCAATCAATggtattttcaatttcaacga
ACGTGTTTTGTTATCAGGGCATTGGGAACATGGACCCTTTTTATATGCAG
CAGTTGGTGCTTATAATGTGGGATCTATCAAACTTGATATTCCTATGGAC
AGGGATTTACAAACTAATAAATCTGGTTCGATTGGACCTCACAAAGATCG
TTTATACAGTACTGGGTACTTGTCCAAACGTGGTGACAGCGTTGGAAATT
TTTTACTTGGATCGTCCATAGTTTTGATATTCAGTGCACCTAAGAACTTT
CAATTTGCAGTTGAACCTGGACAGAAAGTCCAATATGGACAAGCTTTAGG
ATACATCGTTGAAGACAAGGTAGCTGGTGGCTAATTCATTGCGGTATACA
ATCATTCAATTCCAatgactttcccttctcttTCTAGATTAGAAATGAAT
AAGCAAATTTTAACTTCAATAAACAGAATAGCAAACAgacagattttttc
aaaacattcagcAGTTAATTTATTACAACAAACTAAGTTCACGTCAAGAC
ACATACATCATCAATTCAAAAGGGGATATGTCAATACACAAGGAAATCCT
AATGGATGGAAAATTGAATGGTTCTACATCCCTGCTGGTGTAGGATTTGG
TGTCATTGCGTTGATTCAAATCAGACATATTTGGAGGAGGAAACAACAAC
AGAACATAGTTGTTGAAATTCCATATGAAGATAAAGCCGCTGCATTTGTA
TTCAAGCAGTGGCAGGTTGATTTGCTGCGTAAACTTCCCACAAGAGTGTT
ATCAAGAGCATGGGGTTACATGGCTGATTGTCATCTACCAGTCTGGATGA
GAAAACCATTGATCAACTCTTACTCGTACATGTTTGATTGTAACCTTGGC
GAGGCGATGCAAAGTGATGTTACAAAATATGAGACATTCAATAAGTTCTT
CTCCAGGAAACTTAAGCCAGGAATGAGATTGGCTGACAAAAAAGCTGCAG
TGGTATCACCTGCAGACAGCTCCGTGTTAACTTTTGGGACAATGAACACT
CCGACATTTGAGATTGGTCAAGTCAAAGGATTAACATACCCTCTTTCTAC
ATTCGTTGGATCTAGAcatcctttcaataaaaatgtCACTTCTGCTTTTT
CTGgaaaaaagcAGATATTTTCACCGGGGACATGTACAGTGGATGAAGAT
GAGTACAAATTATGTTATTGTACATTGTATTTGGCACCAGGAGATTACCA
TTGGTTCCACTCGCCCACTGAATGGACCATTGAACACAGGAGACACATCC
CGGGTGACTTGTTTTCAGTCAATCCACGTGCATTGAAGTCAATCAATggt
attttcaatttcaacgaACGTGTTTTGTTATCAGGGCATTGGGAACATGG
ACCCTTTTTATATGCAGCAGTTGGTGCTTATAATGTGGGATCTATCAAAC
TTGATATTCCTATGGACAGGGATTTACAAACTAATAAATCTGGTTCGATT
GGACCTCACAAAGATCGTTTATACAGTACTGGGTACTTGTCCAAACGTGG
TGACAGCGTTGGAAATTTTTTACTTGGATCGTCCATAGTTTTGATATTCA
GTGCACCTAAGAACTTTCAATTTGCAGTTGAACCTGGACAGAAAGTCCAA
TATGGACAAGCTTTAGGATACATCGTTGAAGACAAGGTAGCTGGTGGCTA
ATTCATTGCGGTATACAATCATTCAATTCCAatgactttcccttctcttT
CTAGATTAGAAATGAATAAGCAAATTTTAACTTCAATAAACAGAATAGCA
AACAgacagattttttcaaaacattcagcAGTTAATTTATTACAACAAAC
TAAGTTCACGTCAAGACACATACATCATCAATTCAAAAGGGGATATGTCA
ATACACAAGGAAATCCTAATGGATGGAAAATTGAATGGTTCTACATCCCT
GCTGGTGTAGGATTTGGTGTCATTGCGTTGATTCAAATCAGACATATTTG
GAGGAGGAAACAACAACAGAACATAGTTGTTGAAATTCCATATGAAGATA
AAGCCGCTGCATTTGTATTCAAGCAGTGGCAGGTTGATTTGCTGCGTAAA
CTTCCCACAAGAGTGTTATCAAGAGCATGGGGTTACATGGCTGATTGTCA
TCTACCAGTCTGGATGAGAAAACCATTGATCAACTCTTACTCGTACATGT
TTGATTGTAACCTTGGCGAGGCGATGCAAAGTGATGTTACAAAATATGAG
ACATTCAATAAGTTCTTCTCCAGGAAACTTAAGCCAGGAATGAGATTGGC
TGACAAAAAAGCTGCAGTGGTATCACCTGCAGACAGCTCCGTGTTAACTT
TTGGGACAATGAACACTCCGACATTTGAGATTGGTCAAGTCAAAGGATTA
ACATACCCTCTTTCTACATTCGTTGGATCTAGAcatcctttcaataaaaa
tgtCACTTCTGCTTTTTCTGgaaaaaagcAGATATTTTCACCGGGGACAT
GTACAGTGGATGAAGATGAGTACAAATTATGTTATTGTACATTGTATTTG
GCACCAGGAGATTACCATTGGTTCCACTCGCCCACTGAATGGACCATTGA
ACACAGGAGACACATCCCGGGTGACTTGTTTTCAGTCAATCCACGTGCAT
TGAAGTCAATCAATggtattttcaatttcaacgaACGTGTTTTGTTATCA
GGGCATTGGGAACATGGACCCTTTTTATATGCAGCAGTTGGTGCTTATAA
TGTGGGATCTATCAAACTTGATATTCCTATGGACAGGGATTTACAAACTA
ATAAATCTGGTTCGATTGGACCTCACAAAGATCGTTTATACAGTACTGGG
TACTTGTCCAAACGTGGTGACAGCGTTGGAAATTTTTTACTTGGATCGTC
CATAGTTTTGATATTCAGTGCACCTAAGAACTTTCAATTTGCAGTTGAAC
CTGGACAGAAAGTCCAATATGGACAAGCTTTAGGATACATCGTTGAAGAC
AAGGTAGCTGGTGGCTAATTCATTGCGGTATACAATCATTCAATTCCAat
gactttcccttctcttTCTAGATTAGAAATGAATAAGCAAATTTTAACTT
CAATAAACAGAATAGCAAACAgacagattttttcaaaacattcagcAGTT
AATTTATTACAACAAACTAAGTTCACGTCAAGACACATACATCATCAATT
CAAAAGGGGATATGTCAATACACAAGGAAATCCTAATGGATGGAAAATTG
AATGGTTCTACATCCCTGCTGGTGTAGGATTTGGTGTCATTGCGTTGATT
CAAATCAGACATATTTGGAGGAGGAAACAACAACAGAACATAGTTGTTGA
AATTCCATATGAAGATAAAGCCGCTGCATTTGTATTCAAGCAGTGGCAGG
TTGATTTGCTGCGTAAACTTCCCACAAGAGTGTTATCAAGAGCATGGGGT
TACATGGCTGATTGTCATCTACCAGTCTGGATGAGAAAACCATTGATCAA
CTCTTACTCGTACATGTTTGATTGTAACCTTGGCGAGGCGATGCAAAGTG
ATGTTACAAAATATGAGACATTCAATAAGTTCTTCTCCAGGAAACTTAAG
CCAGGAATGAGATTGGCTGACAAAAAAGCTGCAGTGGTATCACCTGCAGA
CAGCTCCGTGTTAACTTTTGGGACAATGAACACTCCGACATTTGAGATTG
GTCAAGTCAAAGGATTAACATACCCTCTTTCTACATTCGTTGGATCTAGA
catcctttcaataaaaatgtCACTTCTGCTTTTTCTGgaaaaaagcAGAT
ATTTTCACCGGGGACATGTACAGTGGATGAAGATGAGTACAAATTATGTT
ATTGTACATTGTATTTGGCACCAGGAGATTACCATTGGTTCCACTCGCCC
ACTGAATGGACCATTGAACACAGGAGACACATCCCGGGTGACTTGTTTTC
AGTCAATCCACGTGCATTGAAGTCAATCAATggtattttcaatttcaacg
aACGTGTTTTGTTATCAGGGCATTGGGAACATGGACCCTTTTTATATGCA
GCAGTTGGTGCTTATAATGTGGGATCTATCAAACTTGATATTCCTATGGA
CAGGGATTTACAAACTAATAAATCTGGTTCGATTGGACCTCACAAAGATC
GTTTATACAGTACTGGGTACTTGTCCAAACGTGGTGACAGCGTTGGAAAT
TTTTTACTTGGATCGTCCATAGTTTTGATATTCAGTGCACCTAAGAACTT
TCAATTTGCAGTTGAACCTGGACAGAAAGTCCAATATGGACAAGCTTTAG
GATACATCGTTGAAGACAAGGTAGCTGGTGGCTAATTCATTGCGGTATAC
AATCATTCAATTCCAatgactttcccttctcttTCTAGATTAGAAATGAA
TAAGCAAATTTTAACTTCAATAAACAGAATAGCAAACAgacagatttttt
caaaacattcagcAGTTAATTTATTACAACAAACTAAGTTCACGTCAAGA
CACATACATCATCAATTCAAAAGGGGATATGTCAATACACAAGGAAATCC
TAATGGATGGAAAATTGAATGGTTCTACATCCCTGCTGGTGTAGGATTTG
GTGTCATTGCGTTGATTCAAATCAGACATATTTGGAGGAGGAAACAACAA
CAGAACATAGTTGTTGAAATTCCATATGAAGATAAAGCCGCTGCATTTGT
ATTCAAGCAGTGGCAGGTTGATTTGCTGCGTAAACTTCCCACAAGAGTGT
TATCAAGAGCATGGGGTTACATGGCTGATTGTCATCTACCAGTCTGGATG
AGAAAACCATTGATCAACTCTTACTCGTACATGTTTGATTGTAACCTTGG
CGAGGCGATGCAAAGTGATGTTACAAAATATGAGACATTCAATAAGTTCT
TCTCCAGGAAACTTAAGCCAGGAATGAGATTGGCTGACAAAAAAGCTGCA
GTGGTATCACCTGCAGACAGCTCCGTGTTAACTTTTGGGACAATGAACAC
TCCGACATTTGAGATTGGTCAAGTCAAAGGATTAACATACCCTCTTTCTA
CATTCGTTGGATCTAGAcatcctttcaataaaaatgtCACTTCTGCTTTT
TCTGgaaaaaagcAGATATTTTCACCGGGGACATGTACAGTGGATGAAGA
TGAGTACAAATTATGTTATTGTACATTGTATTTGGCACCAGGAGATTACC
ATTGGTTCCACTCGCCCACTGAATGGACCATTGAACACAGGAGACACATC
CCGGGTGACTTGTTTTCAGTCAATCCACGTGCATTGAAGTCAATCAATgg
tattttcaatttcaacgaACGTGTTTTGTTATCAGGGCATTGGGAACATG
GACCCTTTTTATATGCAGCAGTTGGTGCTTATAATGTGGGATCTATCAAA
CTTGATATTCCTATGGACAGGGATTTACAAACTAATAAATCTGGTTCGAT
TGGACCTCACAAAGATCGTTTATACAGTACTGGGTACTTGTCCAAACGTG
GTGACAGCGTTGGAAATTTTTTACTTGGATCGTCCATAGTTTTGATATTC
AGTGCACCTAAGAACTTTCAATTTGCAGTTGAACCTGGACAGAAAGTCCA
ATATGGACAAGCTTTAGGATACATCGTTGAAGACAAGGTAGCTGGTGGCT
AATTCATTGCGGTATACAATCATTCAATTCCAatgactttcccttctctt
TCTAGATTAGAAATGAATAAGCAAATTTTAACTTCAATAAACAGAATAGC
AAACAgacagattttttcaaaacattcagcAGTTAATTTATTACAACAAA
CTAAGTTCACGTCAAGACACATACATCATCAATTCAAAAGGGGATATGTC
AATACACAAGGAAATCCTAATGGATGGAAAATTGAATGGTTCTACATCCC
TGCTGGTGTAGGATTTGGTGTCATTGCGTTGATTCAAATCAGACATATTT
GGAGGAGGAAACAACAACAGAACATAGTTGTTGAAATTCCATATGAAGAT
AAAGCCGCTGCATTTGTATTCAAGCAGTGGCAGGTTGATTTGCTGCGTAA
ACTTCCCACAAGAGTGTTATCAAGAGCATGGGGTTACATGGCTGATTGTC
ATCTACCAGTCTGGATGAGAAAACCATTGATCAACTCTTACTCGTACATG
TTTGATTGTAACCTTGGCGAGGCGATGCAAAGTGATGTTACAAAATATGA
GACATTCAATAAGTTCTTCTCCAGGAAACTTAAGCCAGGAATGAGATTGG
CTGACAAAAAAGCTGCAGTGGTATCACCTGCAGACAGCTCCGTGTTAACT
TTTGGGACAATGAACACTCCGACATTTGAGATTGGTCAAGTCAAAGGATT
AACATACCCTCTTTCTACATTCGTTGGATCTAGAcatcctttcaataaaa
atgtCACTTCTGCTTTTTCTGgaaaaaagcAGATATTTTCACCGGGGACA
TGTACAGTGGATGAAGATGAGTACAAATTATGTTATTGTACATTGTATTT
GGCACCAGGAGATTACCATTGGTTCCACTCGCCCACTGAATGGACCATTG
AACACAGGAGACACATCCCGGGTGACTTGTTTTCAGTCAATCCACGTGCA
TTGAAGTCAATCAATggtattttcaatttcaacgaACGTGTTTTGTTATC
AGGGCATTGGGAACATGGACCCTTTTTATATGCAGCAGTTGGTGCTTATA
ATGTGGGATCTATCAAACTTGATATTCCTATGGACAGGGATTTACAAACT
AATAAATCTGGTTCGATTGGACCTCACAAAGATCGTTTATACAGTACTGG
GTACTTGTCCAAACGTGGTGACAGCGTTGGAAATTTTTTACTTGGATCGT
CCATAGTTTTGATATTCAGTGCACCTAAGAACTTTCAATTTGCAGTTGAA
CCTGGACAGAAAGTCCAATATGGACAAGCTTTAGGATACATCGTTGAAGA
CAAGGTAGCTGGTGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036849XLOC_036849Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058486-proteinTCONS_00058486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058486-exon-scaffold_311-1491911889:1164716..1164906TCONS_00058486-exon-scaffold_311-1491911889:1164716..1164906Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1164716..1164906TCONS_00058486-exon-scaffold_311-1510915933:1164716..1164906Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1164716..1164906TCONS_00058486-exon-scaffold_311-1575043694:1164716..1164906Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1165062..1165252TCONS_00058486-exon-scaffold_311-1491911889:1165062..1165252Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1165062..1165252TCONS_00058486-exon-scaffold_311-1510915933:1165062..1165252Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1165062..1165252TCONS_00058486-exon-scaffold_311-1575043694:1165062..1165252Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1165637..1165873TCONS_00058486-exon-scaffold_311-1491911889:1165637..1165873Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1165637..1165873TCONS_00058486-exon-scaffold_311-1510915933:1165637..1165873Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1165637..1165873TCONS_00058486-exon-scaffold_311-1575043694:1165637..1165873Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1167084..1167234TCONS_00058486-exon-scaffold_311-1491911889:1167084..1167234Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1167084..1167234TCONS_00058486-exon-scaffold_311-1510915933:1167084..1167234Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1167084..1167234TCONS_00058486-exon-scaffold_311-1575043694:1167084..1167234Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1167621..1167770TCONS_00058486-exon-scaffold_311-1491911889:1167621..1167770Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1167621..1167770TCONS_00058486-exon-scaffold_311-1510915933:1167621..1167770Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1167621..1167770TCONS_00058486-exon-scaffold_311-1575043694:1167621..1167770Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1168215..1168381TCONS_00058486-exon-scaffold_311-1491911889:1168215..1168381Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1168215..1168381TCONS_00058486-exon-scaffold_311-1510915933:1168215..1168381Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1168215..1168381TCONS_00058486-exon-scaffold_311-1575043694:1168215..1168381Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1491911889:1169157..1169633TCONS_00058486-exon-scaffold_311-1491911889:1169157..1169633Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1510915933:1169157..1169633TCONS_00058486-exon-scaffold_311-1510915933:1169157..1169633Clytia hemisphaericaexon
TCONS_00058486-exon-scaffold_311-1575043694:1169157..1169633TCONS_00058486-exon-scaffold_311-1575043694:1169157..1169633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1164716..1169633 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.5718	62.4835	17.2496	12.768	21.5157	16.8209	21.958	22.526	24.209	20.7353	16.6902	15.3901	13.6813	13.603	16.8706	19.0719	28.9082	25.1776	9.15704	9.77124	16.6578	14.0151	54.0227	46.2222	13.3507	14.5307	11.8207	10.2837	31.8386	34.1343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033177PSD
IPR003817PS_Dcarbxylase
Vocabulary: Biological Process
TermDefinition
GO:0008654phospholipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004609phosphatidylserine decarboxylase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008654 phospholipid biosynthetic process
molecular_function GO:0004609 phosphatidylserine decarboxylase activity
Blast
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BLAST of TCONS_00058486 vs. Swiss-Prot (Human)
Match: PISD (Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Homo sapiens GN=PISD PE=2 SV=4)

HSP 1 Score: 258.455 bits (659), Expect = 1.184e-79
Identity = 147/342 (42.98%), Postives = 204/342 (59.65%), Query Frame = 2 
Query:  299 WRRKQQQNIVVEIPYEDKAAAFVFKQWQVDLLRKLPTRVLSRAWGYMADCHLPVWMRKPLINSYSYMFDCNLGEAMQSDVTKYETFNKFFSRKLKPGMRLADKKAAVVSPADSSVLTFGTMNTPTFEIGQVKGLTYPLSTFVGSRH-----PFNKNVTSAFSGKKQIFSPGTCTVDEDEYKLCYCTLYLAPGDYHWFHSPTEWTIEHRRHIPGDLFSVNPRALKSINGIFNFNERVLLSGHWEHGPFLYAAVGAYNVGSIKLDIPMDRDLQTNK-SGSIGPHKDRLYST-----GYLSKRGDSVGNFLLGSSIVLIFSAPKNFQFAVEPGQKVQYGQALGYI 1291
            +R ++ + + +EIP   K A      W+V L + +PTR+LSRAWG +    LP W+R+P+ + Y + F  N+ EA   D+  Y   ++FF RKLKP  R      +V+SP+D  +L FG +     E+ QVKG+TY L +F+G R      PF     S  S K Q+       V  +  +L +C +YLAPGDYH FHSPT+WT+ HRRH PG L SVNP   + I  +F  NERV+L+G W+HG F   AVGA NVGSI+  I  DRDL TN    S G + D  + T     G   ++G+ +G F LGS+IVLIF APK+F F ++ GQK+++G+ALG +
Sbjct:   86 YRERELEKLGLEIP--PKLAG----HWEVALYKSVPTRLLSRAWGRLNQVELPHWLRRPVYSLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNFGQVKN--CEVEQVKGVTYSLESFLGPRMCTEDLPFPP-AASCDSFKNQL-------VTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRHFPGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFSLTAVGATNVGSIR--IYFDRDLHTNSPRHSKGSYNDFSFVTHTNREGVPMRKGEHLGEFNLGSTIVLIFEAPKDFNFQLKTGQKIRFGEALGSL 409
The following BLAST results are available for this feature:
BLAST of TCONS_00058486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PISD1.184e-7942.98Phosphatidylserine decarboxylase proenzyme, mitoch... [more]
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