TCONS_00058489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058489
Unique NameTCONS_00058489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058489 ID=TCONS_00058489|Name=TCONS_00058489|organism=Clytia hemisphaerica|type=transcript|length=3741bp
GTAAATTATCAATCAAATAActtaaaaagagagagaaaacagAAGAAACG
TTTCACGTACCTGTCACACATTTGTGGCGCTGAAATTTGATCCCAATGGG
GAGGAAATTAGAAAGATNAAATGAATCTTTGTTATTTAAAACGGTAGTAT
AGTATACCAGCAGTAGTATATATCACTAACAGTTACAGAATAATTATTAC
TTTATATAGGGATTGTTGAGTTTATCGAGAGATCACGCGAACCTTAAGGA
GGCTTCTTAGCGGTTTGTGTAATAGCGTTATCAAGACTTTTGGCGTGATG
TGTGTAATTCGAGGTGTGGTTAATCTAATCTtatcctttgcattggagtg
ccccacgaggtttagaattaaggggaaccagctcaggcccgtgtggagct
cagaataagcttaatcaAGACTCCAGGTGATTGAAAAATTGAGGCATGAT
AGCGTGATTTGGGCTTTGCGTGATTGTgataatataaaaaaactaaCGCG
ATGGCTTATGCGGCTGGACGGGTCTATCTCCTCAACACAATTATCACGTG
TTAAGCTAATGATTTGAAAGTCACAAGCCTCTCAGTTGAAAGTTAAAAGT
CCATCTCTGAGTAAAATTTGTTTCCCAATTTGTAAAAAGTAGAAGCAGGA
TGTTTGCTCAGAACCAAAGTCAAAATCTAGCAGATATCCTCTTTTCTGTA
GAAAATGTCTTTACCCGAAGTACTGTTTGAAGGCCAACTGTCTCCTAACT
GTTTCCTTATCATTTCAGTAGAGGATTtcatatttgtttgtttgtttgtt
ttgattatgcAATTCCCTATTTGACATGACGGAACACGGGAGAggtttta
aaaataaacaatctaAAAGTGACTAACGAGGCACCCTTGATTCTCTATAA
AAGCTAACTTCTTTTTCACATCGAACTTCCAGATCAATTGAGCTACGATA
GAGTGTTTCTTgctttttaaattatttatcaACTTAATTTTTTGGTCGTC
TAAGAAACAAAAGAGAATTGAATATATTATTATCTCTCTCTAaacgaaaa
atctttttttcttgatcTGTTATCCAAAAGGAGGAACCCAACaatttttt
ctcttctcttaaAACATAAAACTGACTCTCTCGTGCACGATAGTTTTTTC
GGTGATGTCTTTTCGAGGGTGTGTAGCAACCCTTGTGTTTTTAGTTGTTT
GCTGTTCCAGCATATCAACGTTACTTTTTACAACATCGGAAAGCGTAGAG
CTTCTCATCCCAAGACAAAATGAAAGCAGTTATTTCATCCTTTCAAACAA
CAAACATTTACTCCCTGGACATGACATAATCATCAATATTTTACTGGCAG
TCATATCTATTTACGGGTATTTTCTCATTCGCAATCAAGAGAAATGGAAT
ATAGCTTTGAAACTCAACCATTTTCTGAAGAATATTGTACTCGCAGACTG
GCAGGTCGAGGTGCTACGTAAATTACCTACACGTTACACGTCACGTATTT
TCGGGCGTATTTCTAACTTTTACGTACCATGCTGTCTACGTCAacctctt
tttggcttttacGCTTATATGTACCGTTGTAATTTGGAAGAAGCTCTCGT
TTCCGATTTGACAGCGTACACAACGTTAACGGATTTCTTTACACGTAAGC
TGAAACCGGGCGTACGTAAGATTGATACTGACGTGGCTATGGTATCACCA
GCCGATTGTACTGTCCTCTCCTTTGGTGCATCTGACTGCGATGGTGATCA
AAACATCCAAATTGACCTAGTCAAAGGGTTGACGTATCCACTCAATACTT
TCATTGGGCCTGACCATGACATGTTAAATGAGATATGTAAAGAAGATGAA
GAGAAGAAAGTGTTCTTCTGCACATTATATTTGGGACCAGATGATTATCA
TTGGTTTCACTCACCATGTCAAATGAACATTAATCACAGGCGACACATTC
CTGgtGATTTGTTCTCTGTGGATCCACGTCTGTTACGTCACATCAATggt
attttcaatttcaacgaACGTGTCATGTTATCAGGTCATTGGGAACATGG
ACCATTTTTATATGCAGCAGTTGGTGCTTATAATGTGGGATCTATCAAAC
TTGATATTCCTATGGACAGGGATCTTGTCACTAATTGTCCAATCAGCTCA
TCGGATGCACTTTACCACGACCAATCATATGATCCTATCCATCAAATCCA
GTCTGGTGACTGTATTGGAAGATTCGAATTCGGTTCAACCATCGTATTAA
CTTTCACAGCTCCCAAAGATTTCAAATTCACTGTTCAACCgggtcaaaaa
ttgaaatacgGCGAAGCTATCGGGAATGCATGAAAGGAAAACAATGGCGT
CAGAATAAAGTGCGGTATTTAAAGTCAATTCTGACAGCAGTGGCCATGGA
TGCAAGAGGACATTGGTACACAGTCCGGCTGACACACACCGTTGTTTCAA
TGACCATCTAGTGTTCACAATGTCCATATTACGCTGGATTAATCTTGCAA
TAACGTTTTGTGCCAGCCTGGAAAGGGACATTGGTACACAGAGGACATTG
GTATACAGAAGTAAAGTAGAGTAGGAAAGACCCAAATCGTTAGCGAAGTA
TATACGTAATACAAATTTGTGATGATGACAACTGTGCAATCTAGTCTGCA
AGGCAACCAAAAGATTTTACGATATGGAGCCACCTTGCTACAAAGAAGTC
CATGGGACCTGATCTGCACCTCTATGACACGTGCTGAAAAGAGTCTTTCc
tgtttaaaaaaaacaccTGTTTGTACCTGTTTGGGACAGGGGTCCTTTTT
GACAAAGTGTCTTTATAGACGCTGGTATCATTTTccttagtttttgtttt
aaacttGAAGCATTTTTAGCCCCTGCTTTTCCAAGAGCAGAATATCGATT
CCTtaaaaattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattggccTTTCATCTTCTTTTAATTTTAGCTCAACTGATTAAACAA
AGAGTTTTATCAGGTTCACCAAGAAATAAAGTAGACCTTTGAAAATCCTA
TTgaaataccgtattacttcgatttttatttaattttttcgattttagca
ggggcgtttattcgagggggcgtttattaaattattttagtctaaagGCG
AATTTTTAGAGCAAAtataccctttgttttagttctttatcacgatttta
gtgcaaaatttaTTTGGTTCAACGACTAAAAATCCATCGAAAACGGCcct
ggttacaagaaatgactaaaatcttccttttcaaacccaatcaacACTGA
TATTTAAgtattaaagtcacaagtttctaataaacgcccgTCCCCTAGAG
GGGGGCGTTCATTTGAGGggagggcgtttattaaataattttccttttag
gaggggtgtttattcgagggggcgtttaaaagaagggggcgtttattcga
agtaatacagtAAGTAGACAAAAATTGTTGACCTGTACCATGTTTATGCC
TGAAAATAACTAAAAAGCATTATCATCAAAAATTGTCACTGTAAATATAA
CTTTTTATACAGAAAACTTATATTGTAACTATTTTGTAACttaaaaattt
tgacaaatgaaaagttttattttttgtacTAGTGTAATAATGATATAATG
CTAGTTAATTAGAAAATATATCTTAATAATTATTTAGTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_311:1172809..1188954+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058489 ID=TCONS_00058489|Name=TCONS_00058489|organism=Clytia hemisphaerica|type=transcript|length=16146bp|location=Sequence derived from alignment at scaffold_311:1172809..1188954+ (Clytia hemisphaerica)
GTAAATTATCAATCAAATAActtaaaaagagagagaaaacagAAGAAACG
TTTCACGTACCTGTCACACATTTGTGGCGCTGAAATTTGATCCCAATGGG
GAGGAAATTAGAAAGATNAAATGAATCTTTGTTATTTAAAACGGTAGTAT
AGTATACCAGCAGTAGTATATATCACTAACAGTTACAGAATAATTATTAC
TTTATATAGGGATTGTTGAGTTTATCGAGAGATCACGCGAACCTTAAGGA
GGCTTCTTAGCGGTTTGTGTAATAGCGTTATCAAGACTTTTGGCGTGATG
TGTGTAATTCGAGGTGTGGTTAATCTAATCTtatcctttgcattggagtg
ccccacgaggtttagaattaaggggaaccagctcaggcccgtgtggagct
cagaataagcttaatcaAGACTCCAGGTGATTGAAAAATTGAGGCATGAT
AGCGTGATTTGGGCTTTGCGTGATTGTgataatataaaaaaactaaCGCG
ATGGCTTATGCGGCTGGACGGGTCTATCTCCTCAACACAATTATCACGTG
TTAAGCTAATGATTTGAAAGTCACAAGCCTCTCAGTTGAAAGTTAAAAGT
CCATCTCTGAGTAAAATTTGTTTCCCAATTTGTAAAAAGTAGAAGCAGGA
TGTTTGCTCAGAACCAAAGTCAAAATCTAGCAGATATCCTCTTTTCTGTA
GAAAATGTCTTTACCCGAAGTACTGTTTGAAGGCCAACTGTCTCCTAACT
GTTTCCTTATCATTTCAGTAGAGGATTtcatatttgtttgtttgtttgtt
ttgattatgcAATTCCCTATTTGACATGACGGAACACGGGAGAggtttta
aaaataaacaatctaAAAGTGACTAACGAGGCACCCTTGATTCTCTATAA
AAGCTAACTTCTTTTTCACATCGAACTTCCAGATCAATTGAGCTACGATA
GAGTGTTTCTTgctttttaaattatttatcaACTTAATTTTTTGGTCGTC
TAAGAAACAAAAGAGAATTGAATATATTATTATCTCTCTCTAaacgaaaa
atctttttttcttgatcTGTTATCCAAAAGGAGGAACCCAACaatttttt
ctcttctcttaaAACATAAAACTGACTCTCTCGTGCACGATAGTTTTTTC
GGTGATGTCTTTTCGAGGGTGTGTAGCAACCCTTGTGTTTTTAGTTGTTT
GCTGTTCCAGCATATCAACGTTACTTTTTACAACATCGGAAAGCGTAGAG
CTTCTCATCCCAAGACAAAATGAAAGCAGTTATTTCATCCTTTCAAACAA
CAAACATTTACTCCCTGGACATGACATAATCATCAATATTTTACTGGCAG
TCATATCTATTTACGGGTATTTTCTCATTCGCAATCAAGAGAAATGGAAT
ATAGCTTTGAAACTCAACCATTTTCTGAAGAATATTGTACTCGCAGACTG
GCAGGTTAGCTTTCattatttgtatttttgtattttttttatgtAAGACT
CGTCCACttttgcattgtagcggtagcagcaatctaacgtcacctTGCTA
CAAAAGTGCTCTGCgctttttttcaacaaaaaaagtgcatttttcgGGTC
TTCGATAAagcagttatcagacattttcCTTACAATGtgaaaatatttca
ctcgttccagatttttcgtatattttcctcgcctataGGCTCacttgtac
ggaaaaatctcgaaactcgtaaaatatttctcattttatactcgcaactg
tccgataactattacatatttaACGATAGTTTGGGGAATTGTGCCATATT
TACAAAAGGTTATTGCTTAATCTCTTAGACTTAGCATTCATTATTATCGC
GCGTTGCTAGGGGaggaaattttcaacttttgattgACAAGCGAAAAGAG
CATTGTggtaaattcatttcaaactTCCTTTTTTCAGGTCGAGGTGCTAC
GTAAATTACCTACACGTTACACGTCACGTATTTTCGGGCGTATTTCTAAC
TTTTACGTACCATGCTGTCTACGTCAacctctttttggcttttacGCTTA
TATGTACCGTTGTAATTTGGAAGAAGCTCTCGTTTCCGATTTGACAGCGT
ACACAACGTTAACGGATTTCTTTACACGTAAGCTGAAACCGGGCGTACGT
AAGATTGATACTGACGTGGCTATGGTGAGTTTTTACATTACCAAGGATTT
TTTCAAGCACATTTTCTTGCCACCGTTTCCCTCTAGAAACCTGAGTTTca
ataaatttataaaaacCCGATTATCGGGTGAAGATAATTATCAGTTTTCA
GCTCCCTATAAGCTCTGCTTCTGCATAATATAAACATACCTTTCTGATGC
TTTTTTAGCATTTCATCATTATTTTGTAAATGCTTTAACAAATTTGGTTT
CTATATCCGTGAAGAGTCGCTTGAAAAAATCCCTGTGCACATGTTTCATG
AAATTTCTTAACCACTGACATTTGTTATTGTATGACACTTTCGATATGAT
CAAAACCCGATTCAGTAAGACTTGTTTTGAAAACAAGTTTAGCTAGCTTC
ATTGATCtttttaaaaatccaaaatttgtttATAATCTGATGCAAACCCA
TTTTAAATCAACTATGAACTTTGACCTCATTAACTTTTGATGGAGTGTAG
TTTTATTACAAATCATCCCTCACCCTGTTAATAAGCATCCCTCACCCTGT
TACTAAGCATCCCTCACCCTGTTACTAAGCGTGTCAAATCATAGAACTTA
AATTTCATTTCCGTTATTTACAATGTAAAGTCTGcggaattttttatcaa
atgcaCTTTTGCGCTTGTCAAACAAGTAAGCTTTAGATAGAGAATAAAAT
CTCAAACATTTGTCTCAAAGACACAAAAGAACCATTGCTTGAGCAGGATc
cctattttcaaatttttatcttaaaatcaATGCTCAAATCTAAATTGTAA
GAATAGTACAAAATCATCTATTTCAACGTACCAATTCCCTGCTGGGGCTA
GAGAGAGAGGATAAGCTCGTAAACTTGTAAAAtgaattcaattatttttc
ccATCAAAATGCGTTATCCGCGTGGTTTTCACGCAAACGCCGGACTGAAA
ATTAAATATATCGTTGGGTTTTAAAACTAAAGAAAGCGCTTCAATCTGTC
ATCCAAGATCATGctgttaaaattttgaaaggcttcactttttcttgctg
aagaaaggttgaagattccccTTCGCCCATAGTCAtcataaaaacactgg
tctggaaggcttttgtctctttttattgttaaagatggagcttacgtacc
aaaatcgatttattttgcaaaatttttgatcatgtgattagaaaatagac
caatcccaagaggagaatTTGGTaaattgatcaaaaagtatgcaaatcgc
aacttgccttttgtttgtaacaaaagaaaattgaacaaaaagctacaaca
atacattgccagaccggggttttttataatggcTATGCTTCGCCTTTAAA
CTAGATGGCTTTTTCTACGATCgcttgaaaaattatttttcaatatacTC
CACTTCTCTCTCTCAGGTATCACCAGCCGATTGTACTGTCCTCTCCTTTG
GTGCATCTGACTGCGATGGTGATCAAAACATCCAAATTGACCTAGTCAAA
GGGTTGACGTATCCACTCAATACTTTCATTGGGCCTGACCATGACATGTT
AAATGAGATATGTAAAGGTATGTGTAACAAATATGTATTTGAAAGATGGT
GGTTTTTCAGCATACTCTAAGGTCCTGAATAAATATCACTCCCCCctgga
atttaatttgaaaatatttcggaTATTGTAACTTACGGAGCCAAAATCGA
CCGTATTTGAAATACAGGAGCACTTTTGTTACATATGCGATAATGCAATT
GCattaacccttcgagcatcttggggggggggcaaaaggccccccccccc
aaaaaaaaaaaaaaaaaatttttttaaaatttttgaaatatttatccaat
tggcttgaaaaaaaatgaattattcaaaatatgaattgacatcaattttt
aaaattttggcaTCATCGATGACGTTATCgtcacctgatgacgtcatcat
tcatTGAAAATACCGAAAATATTAGGACTCCCcaactttttttcacttta
atttttttttaccaaattttgtgAGGCATCTCCACGTGACATGTGTTTTA
CAAATTTGTATTTGTCATACTTGGAGGGGTATAATTCTTAAATATATGAA
GAAAAAAGTGCCTTTTATATTAGTCTGTTTCCGTCGGACAAATTCCGTGT
CTCATTTTGTGTTCTAGGAAAAGTTAGAAATAACATGATGAAACTAGGTC
ATCAAAATATTgactttaaagattttgtttttaaataagagtgataacgt
ttgcttactcatcgatTTTAactcacaagctttttcacattggattgaca
cggatgtgaagcgagattggtcagaaagtggaaaagaaaaacaatttttt
cttatatcagcataatataacaataggtatcctgatatgaaatatgtgta
tatgaaacgggaacacttatgtaaaaataaaacctttaaccatAGTTAAT
GTTTTTCATCCACTGTCAATGATTTTATTGATTCTCCGATCTTCATTGAT
TGACAGACAAGAAATGTTATATTGTGTGTGCTGTGTGACCCAGTACACTT
TTAATTGGACCCCTTCTCAATTTCAAAAACGGAAAAAATGAGCCTTTAGA
ATTCCATGTTCCAAAAGTGTACGATTTTTAGAGGCGCCTGTTGCATGTTG
CCCGTTACAATCTGAAGACATATGTAGGGAAACTCCCTACTCCCTTACTC
GTAGTCGGTAGCGACTGTGTTAAAAGGATGCTTTCAAAAAGTTGGGATGG
TTAAtactcccgggggggggcactcaaggtaaatgacctaccagacgttc
ggcccttaagggtaggtttttcatagttcagctagtgcactgtaagggNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggcac
tcaaggtaaatgacctaccagacgttcggcccttaagggtaggtttttct
tcagaaattacaaagctgcactgaactgcactgtaagggtaggaaattgt
gataaaaggccaattttttggttaaattggcacaaaattggtcaattttg
gaggaaaaattccacattttcttggccCTTACggccgagaaattttgaaa
aagtgcactgtattaagggtatgatttttcatggaaattcactgcactgt
aagggtccgattttagaagccaaattttgggccgaacgtatggtcgtttt
cagatcgagtgccccccccccgggttaatACTTCACGTTATCTCTTTAGC
GTAGAAAAGTCAGGTACAGGCTACTTATTACAGTCTTTCCCTACCCCAAC
ACGTGATTTTTTATCACGGTTACAGGCTACTTGTTAACCAAccctttcca
tttttctttgTAGAAGATGAAGAGAAGAAAGTGTTCTTCTGCACATTATA
TTTGGGACCAGATGATTATCATTGGTTTCACTCACCATGTCAAATGAACA
TTAATCACAGGCGACACATTCCTGGTAAGTTCGTATCCTTTAAacccggt
ctccacttgcgcgcgctgcgatcgcactttttgctttcaatcctttttgc
ttggaaaaaagataacgtcataaaaatggatcgcgcgctcgaaaaaaaag
ttgagcaCCGTTACCGTaatttggtctaatgtcgacatccctcctctgat
ttcgacaccctttttatcagctgaaattgatagaaaggttgaaactgttt
ttctttgcttagtggtcagagaggaataatcctttttaaatcagtgattc
aagccttcatattattcctgtctctaaagaagggtgtcggaattagacga
gggatgtcgatatttgACCAATTTACGGTActtcagatcgcgccaatgga
ttcgcttcatttttcttttgaccaatagcgtggaagctttgctcaaaaaa
gtgcgatcgaagggcgcgcaagtggagaccggcctttagtgCCATGGGGT
CGTCTAGATGttagactttttgataaaagggaCAGTTTTTCCTTTGAGAT
TGTACGTCTTCCTTTTTGCACTAGTAATTTGCCTTCAACCATGTTTTACT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcgtt
aagttggtgaaaatgatttctcgctctgtttgaatgtttttgatttttag
tttgacacgcgttttctgaattttaattagctttttcagataaatacTTA
TCAGGTGGTATACCCGGACAAAAAACTTTCCggacaaattttgattttta
tcaaattttgaatctttttcgtAAAGTGtcgtaattttttcaatttcacc
ttagaaaagaattttgtaagtaagtttgattattttttcattcagtaaaa
taaaatttatgaaatgtTTGCTCAATTTACAGAGTAGTCCCTTTTAAAAG
CattaattgtacaaaaaatgatttttatgttGCAAAAATAGTCCAGACAA
CACAAAATTTTAACTGCTAAGACCAAATTAGGGTTGTCTCCTGGGGTGGT
GATATGCAAGAAAATCTCTAAATCCCTTACAGTCTGAGATTTTCGTACCG
ACCCTCCTGATACGGTGTGCAATCATCAAAGACGTCTATATGAAGAGGAG
CTTCGAAATAGATCTTGAGTCTACGTTCGCAAGacataaaaataaacaat
tttagtTGGAGgacttagaccatgttcagacggttccgttccgttcggct
ccgaaacggttccgaaacaagtgtgaacgtcaaaattcaaaacgtcaaaa
agaagacgttacaaagcacgTTTTCGCTCTAcctttttcatcggaacgga
actgctccgttttcttgctcggaaacgttccgaaaccaatatgaacacac
tcgatccgttaCGAAAATgataccggagcgaaacggaacagtaacgtgtg
atcGAATTttatacagtatgtggcccccaaaacggcgatcaaatttgaga
tttctctcaaatctagaagaaaagagattttacaaaaaattttgctgcat
gaaaacctttaacatctctactttatttcctggaagttctttttcaaaat
tttcaatttcaacaatatttttcaatcgctNNNNNNNNNNgtagcttttt
tctaatggcccccaaaacggaggtttgaaattttagcgatttctcgagat
atcttgaagatatgaatacaaaattttgaccatagttttgaaatatgatt
tagagggttttgggcataaatttatttgataaaatttttacagtataccc
ctggttgtcaaaatgcaggtttggggcccccaaaacggaggtgtagttaa
aatcaaattattaaacccagtggtaatagaaggaaaaactatgaacatat
ttgtgttttcccttaaatttacgagcccatggatgtaaaatttatgattt
ttatgaaatatttcaagattttcgatattgctaagtccaaactgaaaatt
tagaaattttcaaaatgacaattttgacttaacaacgtcttaatcaagtt
tttgaaaacaaatctcttttgaaaatagttgtATGGAATATtccatgtat
ggaataagctgtgaaaattaaaaaaaaaaagcttaactgaaactgaaaat
attaagctttaaagatatttttctcatatattttgcaaaaaaatgacaga
atttgctgtatttgctgattcagcgaaaaattttatatataatgttaatt
ttttgttataaactatcaactcaaggtgataggaatagaattccaagatt
ttttgctttttctcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcaca
gatgtatttgcattttctgaacggcattaggtgtagaaagtttcctatgc
cccgttttcataacttattttcaatatccaaagagctagagtgagttata
tcatgaacatataaacgactggacatctatcttttattgtctctttgaag
cgagcttcgttgccgcctgtatttcaaaattggtataagaaatccgacaa
tattccgtcataattttatttctttgaattatttaggtaaaaagatcgat
agagcttgaacattactcctaatgtacaaaaaaattattttcgaattttt
tcaccaagtttgcaatatattttatcaacattttcaactctaaaatgcag
aatttcaactgcgtgtatacttttgaatcccttttgtcactccaataatt
tttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNaaattagaatgtgacactctctaaaattattagacactttt
atatcaaaatttagaaatattagtcggagttttgacaagctgacgatgat
tttgcctctgttatctttgttatgatatagataaaagacttgagaagagt
agaacaacagagacttttgtcgaagttttgacgttgctAGCAACGTATTC
CCAAGTGGtgtatcatcaaaatctattgtttcattttatgcttttaacga
ggcggcaacgaagctagcagccctttctacaaaaagacaaaggagatgga
tgtccagtcNtatgcaatttttatctaattttggtgttaaaatatttcct
ttaaacgcaaatatgttattttgaatctgtctcaaaccagcaaaaacatg
ctcattcttaagtataaccatcattctttcaaaataaacaaaaatcgttt
aattctgataaatctacaagtcagaatcttcattttaatgaaaaactccg
ttttgggggccgtctccgttttgggggccatatactgtatagaGGTTGCT
CTTCTTTCTCGAGTGCTCCATCTGATGGGTACTAATAGATACTANtatta
aaaaaaacaagagccgcaaagatgcggataaatatttcctttacaaatgt
taaaataataattgatgccctcaaaaaatttcaaagtgctttaatattaa
atctcagataacatcaagcaacgcaagaatttcaaaattccatttatgtt
attgccagtatttacaggattattcataagatgactgtaggttcaaagct
acggatcacggaatatatccaagctgaacNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcatgggactgtttgatatctggtctgtattttcactaacttgttaaa
tctctttgacaacaaatttgttttgataactccatcaagtttatcaatca
tacttcctttcataacatgtcacgatgataactttcactgatagcgacga
ttggagaattagagaatgcccgctgcctaaccgcctatcgcccaatggga
ttaacaaataacgcgtgtgtaacttgccgcccgagtgacgtcaaacgctt
catcgttttgccatttttttaatacgccgttcattaactcaaatcaaatg
actttggaggttcggtgaaatgatggccaaattgccgtcccatgttttgt
cagatagtcccaagttggagcagttgacggtaagaaaatctccaaattca
caacaaaagtttccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgaaaaattttaattgtacatgtgagttga
tttcaaattaattacatccatattcaatgcaataaaccttttaagaagta
taacataacattcttcattGTTCATATTGGGGCTGTGGTGTTCCGtatcc
ggttatcagctttaaaatttgaaatttataaccgcaacgagttttcacta
aggccgatgaaatttatatatgagtttaccgtcggccgccctgcatctct
aaaaagcacccgcatgaaaatttcattattttcaaaattcataaattttt
cattatttccatatttctttacaactacaacctctatctttgttaaaatc
gtctctaTGCATGTTTACACGGGTAAACAAAGAATATTTATTACAGAAAA
TGCTGccgccctcaatcctacaactGCAGTGGGCGTCCCGCCCATATATC
TGCCAAACCGCCCTGaccgccattttagttttttgcaaaatctagcgcca
ctgtagcaatcgatctttatttttcgttcgcaaaagatgcgaagggttga
agcgaagcaaaattttttattatgagagagcatgattggcagaaatggtg
gataaggtgctgttgggaaaataatgaataatgaataatgaaatcatgcc
gcatctatttttgggtaagttcacgacggtaaactcatatgtaaatttca
tcggcctaaCTGTCACTATCccccagcagttaattcattgttgtagataa
aaaaccaagggaaatttAATCAtcaaccagtcaattttgctccatgttta
aatgttcagctaaaatcagttcatcaaccattcccattgttgcatCATCA
TTGTTGGCTTGCTTCCATTCGTGTCcattcgttgggtgcaaacttttttt
atattgcaaacgtatgtaatttttcaggtataaccatggtcagatttatt
cacagtcacttgccttcgtacgatttatgtaaatatgcaaacaaaattga
agttaatttgttgtgaaagttgataaaatgtcttgtttttccaagaccaa
gagattGTATTATCATCTCTCAGTCtctctcattccagctcattccaaac
caacagaaatgtaaacgaaacatcaaatccagaaagtaatattaagaaaa
gttcactatcgaccattccttgtgacaatcgtacaaaaatcatgatccaa
ttcaactcatcaaagcatataaaccaaagcaaagaaaagtagcgaaagag
caaaagttgttgtctatttcctgccatctttgttttgacagttagaaaca
aagcagtatgaaatggtccgatcaacaatacgcttctgaaacggccgacg
ttgtccgatcgacaaggagaatagagcgccgtacagatatttaccacaga
cgtttctcgaagaaatgacgtcttccgcctcgaaaaaagaacatcctact
gtttttaacgccggagcttgatttaaaaagagactcatgtacaaactcac
gaaattgaccaaaaccgagcgttagacttggaggagaagaaattttaccg
ttttaacaaatatttcctatagataggaaatatttaattataaGAGTATA
AGTAGAAAATTACAGTACGGGTAACGACCCAGGAAATTCTAATTGTGCAT
ATGAAACCGTTTTGTGTTTACgtattgtaaatttttattatgTAGTTTTT
GTTAGTAATATACATGTTCGAATCATTTACGTTATTGATAACCCTCTAAA
AAatagtaacgtgtgaacatggtttCATAATTAAAACTCTtataaccttt
ttgttttgtttttcaggtGATTTGTTCTCTGTGGATCCACGTCTGTTACG
TCACATCAATggtattttcaatttcaacgaACGTGTCATGTTATCAGGTC
ATTGGGAACATGGACCATTTTTATATGCAGCAGTTGGTGCTTATAATGTG
GGATCTATCAAACTTGATATTCCTATGGACAGGGTAGGGATAGTTTTCAT
TTATTACTTAGATTTTtgtcttttcctctttttttatgataatataaaat
tttttaatggTGATTAGAAAATGTATCGCTGGTTTTTCAGTTTGATAATA
AAGATGTATATCTTTTTCGAAAGTAAAGCTTTGTTTCGGAGTTTGGAACC
GATCAACATTGGTTACCACATTTCAGTTCCTTTCTGCTAAAACCCTCCAT
AatttctaaaccctcgaaaatctttgatttgCGCGATTGAGTGCTAAAGG
CTGACTATTGAATCAGCGAAGTATACAAAGAAACTTtactgtctcaaaat
tctgtaTAATTCTCCGTAATTCCAAGAATATTTGttaatttgctgtgtaa
aatctaTTTTCTGTCTTAGAcaaaaaaccttgctttgaccactgttgAAT
TAATGTTGTCTTTTTATAACTATAGGATCTTGTCACTAATTGTCCAATCA
GCTCATCGGATGCACTTTACCACGACCAATCATATGATCCTATCCATCAA
ATCCAGTCTGGTGACTGTATTGGAAGATTCGAATTCGGTTCAACCATCGT
ATTAACTTTCACAGCTCCCAAAGATTTCAAATTCACTGTTCAACCgggtc
aaaaattgaaatacgGCGAAGCTATCGGGAATGCATGAAAGGAAAACAAT
GGCGTCAGAATAAAGTGCGGTATTTAAAGTCAATTCTGACAGCAGTGGCC
ATGGATGCAAGAGGACATTGGTACACAGTCCGGCTGACACACACCGTTGT
TTCAATGACCATCTAGTGTTCACAATGTCCATATTACGCTGGATTAATCT
TGCAATAACGTTTTGTGCCAGCCTGGAAAGGGACATTGGTACACAGAGGA
CATTGGTATACAGAAGTAAAGTAGAGTAGGAAAGACCCAAATCGTTAGCG
AAGTATATACGTAATACAAATTTGTGATGATGACAACTGTGCAATCTAGT
CTGCAAGGCAACCAAAAGATTTTACGATATGGAGCCACCTTGCTACAAAG
AAGTCCATGGGACCTGATCTGCACCTCTATGACACGTGCTGAAAAGAGTC
TTTCctgtttaaaaaaaacaccTGTTTGTACCTGTTTGGGACAGGGGTCC
TTTTTGACAAAGTGTCTTTATAGACGCTGGTATCATTTTccttagttttt
gttttaaacttGAAGCATTTTTAGCCCCTGCTTTTCCAAGAGCAGAATAT
CGATTCCTtaaaaattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattggccTTTCATCTTCTTTTAATTTTAGCTCAACTGATTA
AACAAAGAGTTTTATCAGGTTCACCAAGAAATAAAGTAGACCTTTGAAAA
TCCTATTgaaataccgtattacttcgatttttatttaattttttcgattt
tagcaggggcgtttattcgagggggcgtttattaaattattttagtctaa
agGCGAATTTTTAGAGCAAAtataccctttgttttagttctttatcacga
ttttagtgcaaaatttaTTTGGTTCAACGACTAAAAATCCATCGAAAACG
GCcctggttacaagaaatgactaaaatcttccttttcaaacccaatcaac
ACTGATATTTAAgtattaaagtcacaagtttctaataaacgcccgTCCCC
TAGAGGGGGGCGTTCATTTGAGGggagggcgtttattaaataattttcct
tttaggaggggtgtttattcgagggggcgtttaaaagaagggggcgttta
ttcgaagtaatacagtAAGTAGACAAAAATTGTTGACCTGTACCATGTTT
ATGCCTGAAAATAACTAAAAAGCATTATCATCAAAAATTGTCACTGTAAA
TATAACTTTTTATACAGAAAACTTATATTGTAACTATTTTGTAACttaaa
aattttgacaaatgaaaagttttattttttgtacTAGTGTAATAATGATA
TAATGCTAGTTAATTAGAAAATATATCTTAATAATTATTTAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036849XLOC_036849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058489-exon-scaffold_311-1491911889:1172809..1174262TCONS_00058489-exon-scaffold_311-1491911889:1172809..1174262Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1172809..1174262TCONS_00058489-exon-scaffold_311-1510915933:1172809..1174262Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1172809..1174262TCONS_00058489-exon-scaffold_311-1575043694:1172809..1174262Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1491911889:1174746..1174982TCONS_00058489-exon-scaffold_311-1491911889:1174746..1174982Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1174746..1174982TCONS_00058489-exon-scaffold_311-1510915933:1174746..1174982Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1174746..1174982TCONS_00058489-exon-scaffold_311-1575043694:1174746..1174982Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1491911889:1176375..1176525TCONS_00058489-exon-scaffold_311-1491911889:1176375..1176525Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1176375..1176525TCONS_00058489-exon-scaffold_311-1510915933:1176375..1176525Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1176375..1176525TCONS_00058489-exon-scaffold_311-1575043694:1176375..1176525Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1491911889:1178322..1178432TCONS_00058489-exon-scaffold_311-1491911889:1178322..1178432Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1178322..1178432TCONS_00058489-exon-scaffold_311-1510915933:1178322..1178432Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1178322..1178432TCONS_00058489-exon-scaffold_311-1575043694:1178322..1178432Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1491911889:1186725..1186891TCONS_00058489-exon-scaffold_311-1491911889:1186725..1186891Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1186725..1186891TCONS_00058489-exon-scaffold_311-1510915933:1186725..1186891Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1186725..1186891TCONS_00058489-exon-scaffold_311-1575043694:1186725..1186891Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1491911889:1187334..1188954TCONS_00058489-exon-scaffold_311-1491911889:1187334..1188954Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1510915933:1187334..1188954TCONS_00058489-exon-scaffold_311-1510915933:1187334..1188954Clytia hemisphaericaexon
TCONS_00058489-exon-scaffold_311-1575043694:1187334..1188954TCONS_00058489-exon-scaffold_311-1575043694:1187334..1188954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1172809..1188954 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2261	1.53641	0.519417	0.88455	27.0587	22.087	14.1956	15.7624	8.21536	8.34967	9.06144	6.09389	2.61096	2.44884	5.72007	5.29566	2.60551	3.62253	3.14964	3.33191	3.60563	3.66472	1.76395	2.43845	4.70218	3.79072	1.41877	0.973398	0.766544	0.517981
Blast
[Close]
BLAST of TCONS_00058489 vs. Swiss-Prot (Human)
Match: PISD (Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Homo sapiens GN=PISD PE=2 SV=4)

HSP 1 Score: 238.039 bits (606), Expect = 2.488e-68
Identity = 136/348 (39.08%), Postives = 198/348 (56.90%), Query Frame = 3 
Query: 1365 GYFLIRNQEKWNIAL--KLNHFLKNIVLADWQVEVLRKLPTRYTSRIFGRISNFYVPCCLRQPLFGFYAYMYRCNLEEALVSDLTAYTTLTDFFTRKLKPGVRKIDTDVAMVSPADCTVLSFGASDCDGDQNIQIDLVKGLTYPLNTFIGPDHDMLNEICKED-------------------EEKKVFFCTLYLGPDDYHWFHSPCQMNINHRRHIPGDLFSVDPRLLRHINGIFNFNERVMLSGHWEHGPFLYAAVGAYNVGSIKLDIPMDRDLVTNCPISSSDALYHDQSYDPIHQ------IQSGDCIGRFEFGSTIVLTFTAPKDFKFTVQPGQKLKYGEAIGN 2327
            GY   R  EK+      KL   +   +   W+V + + +PTR  SR +GR++   +P  LR+P++  Y + +  N++EA V DL  Y  L++FF RKLKP  R +    +++SP+D  +L+FG       +N +++ VKG+TY L +F+GP       +C ED                   E  +++ C +YL P DYH FHSP    ++HRRH PG L SV+P + R I  +F  NERV+L+G W+HG F   AVGA NVGSI+  I  DRDL TN P  S  + Y+D S+   H       ++ G+ +G F  GSTIVL F APKDF F ++ GQK+++GEA+G+
Sbjct:   76 GYAGYRQYEKYRERELEKLGLEIPPKLAGHWEVALYKSVPTRLLSRAWGRLNQVELPHWLRRPVYSLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNFGQV-----KNCEVEQVKGVTYSLESFLGP------RMCTEDLPFPPAASCDSFKNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTVSHRRHFPGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFSLTAVGATNVGSIR--IYFDRDLHTNSPRHSKGS-YNDFSFV-THTNREGVPMRKGEHLGEFNLGSTIVLIFEAPKDFNFQLKTGQKIRFGEALGS 408
The following BLAST results are available for this feature:
BLAST of TCONS_00058489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PISD2.488e-6839.08Phosphatidylserine decarboxylase proenzyme, mitoch... [more]
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