TCONS_00058491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058491
Unique NameTCONS_00058491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058491 ID=TCONS_00058491|Name=TCONS_00058491|organism=Clytia hemisphaerica|type=transcript|length=1647bp
GTCGAGGAGGAGGTATTTCAATCGATCGTTTTACAGTAATAGTACTAAAC
CCTTTTTGAAACCACTTGTGGTGGAGTGAGAGAGATTCATCTTatctttt
tgttgattttctgagTTGAtttattttgtgactttttaccagaaaaaaag
tttttattttattttggaaagaGGAATTCATAATGGCAGTTGTTCAAGCA
CCGCTCGCTTTGCTGCAATACAATCGAGATGATGAGCAATCAATACTGAC
TGGTATTCGTAATCAATCGCAATCACAAAAACGTCGCATTCTCGATCTTG
AAAACCAATTCGAAGATGCTCGAGTACGAATCGATAAACTTTTACAACGA
AAATCGATTCGTCGAAATACATACGATTCGGTATCGAATTCTTCATCGTT
CGTGACTCCTTCAGCTTCGTTTACATCGGAACGATCTTCGCATTCATCAA
AAATGAACATCGATAGAAGCGATTCAATGGATTCGACGTCCTCAACAGAA
TTACACAAAACACAAATCAACATCAATCCAGCGAATAATACTAAACAAAC
TTTCGGTACTGTTACACTTACAGTAAAAGTTGATGAAGATTAACGGGaat
cgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgaatgattgattgaatgattgaatgattgaatgattg
aatgattgaatgattgaatgattgattgaatgattgaatgattgaatgat
tgattgaatgattgattgattgattgattgatctgTTGACAATGAAGGAT
CAGAGGGTAATGGTTCAAAATGTAATGTTTATTCTTTTTCACGATATTAC
AAATATTACTAACCTCGAATTCGTAAGGGACTGAAAAATCTATTTgcaaa
aaagtgacaaaattggTACAGATCTTTCGAAATTTAGTATCTGATATTTC
CCTCTCTTATCCATTTCTACCTACGACTAcatataccttattacacgaat
atcaCTATTTACTATTTTATTACCacggattgaaaaatttcgtgttaata
aaaatccccttaattaaaaccagtcATGGTGTcagtccttgaaaaagcaa
taaaattcgtgttaatttttggagtgttaatttcaaggccgttgaatact
tgcctagtaatattcgtgtaacgTGTAATAGGTATTATCCTCAATTTTCT
AATTAAAATCAAGCGATCTTCCAAAAGTGCTGCATTATTGCAAAGTATCA
TGAAAATGTATAAAAGGGCATATTTTGTACTCTCCATTTCGATTACTATA
TAATATTTAAATGGTTGTTAAAATCATCCAAAGACCCAGAACAACCTGGA
AAATGTCTACCCAGTgagaatttcaacgtaacttGTTTAATGTATATTAT
AAATTTTCTAGGGATTATTTTTCATGGATTATTTTTCTTGTGATTATTAT
AATTAACAAAATTTCcccgtttctttttttttcgctcATGTTGTACAATG
TTTAGAATTTATATAAGAGAAACTTACGGTTTATATAAAAATAGGTTATA
GGGTtttttaaacgaaaaaaaattgttttgttctttatttatgaaat
Run BLAST on NCBI

transcript from alignment at scaffold_311:1202812..1206780+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058491 ID=TCONS_00058491|Name=TCONS_00058491|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at scaffold_311:1202812..1206780+ (Clytia hemisphaerica)
GTCGAGGAGGAGGTATTTCAATCGATCGTTTTACAGTAATAGTACTAAAC CCTTTTTGAAACCACTTGTGGTGGAGTGAGAGAGATTCATCTTatctttt tgttgattttctgagTTGAtttattttgtgactttttaccagaaaaaaag tttttattttattttggaaagaGGAATTCATAATGGCAGTTGTTCAAGCA CCGCTCGCTTTGCTGCAATACAATCGAGATGATGAGCAATCAATACTGGT AAATAATCGAGTTTTGTTTTTTGGATCCTTTTCTTTAGTTTCAGTTTATG TATCGTCTTGGTCATTCGATAATGTACCAGCTTTGAAAGAAGAGGGTCTA TAATATTAAGAATATATCCGAAAATAGTATAGCATGCAAAGCTctccttt tgtattttctttccCAAGCATCCTCCTTACTGGCGTTGGGGatattattt taatgaatttttctaTTATGCAAAGTTTTTGGTTCAGCCATTGAATATGC ATTTAGTGGTTTAGTGCAATTTGtatgaaatttttcttaataAAAGTCAA ATCCAGTTATgttcgttttcattttttattgaacaaaacttttaaagaat tCTTTTAGCACACTGACGATTTCATTCATCAGTTCTATCACCATCTAATG TGAACCCAGAATGTTTTCAAGTTGGGAGGAGGGAAGGGAAATAGAATAAA TGTAGCCTATAATCAAAATAATTGTCATATATCCCTCATTCGTTTTAATT GAACTCAATATCTGATCGTCCAAAATGGTACCTTTGAAACGCGGCAGCAC TTATTACCAAAACCCTTTTATTAACCTATGATTGGTCCAAGTTTACTTTT GATGCTTCACTTGTAGTCTTGTTATATCCAAGCAAGGTCTTCATTTATGA TATTCATTCATTCCGATTTCTGAAGTATTTGCAAATTTAAGCTAGAAATA AGCTGTCTAAAGTTTATCATTTCTGGCAAAAACCGGAGTCTTTCCATAGA AAACTTTTcgtaatgaatatcatgaattcaatCCGTGTTCAAGTAGTTCA AGTACCTCATTTTTAAGGACTGACACACCTGAGCACAGGTCGGAGGAGTG ATTCTGATACTAATAATTCGGGGAATCGAAAATGccttaaaaattaacat ttctCCATAGAAGGTTAAggttacttttttcttttcgcGTGATTCTGCAA TACCACTATCATTGCATCgaacaaaaatgacaaaaaaatgttttccttgG CTGACATGAACTGTGTATATAACAGAGTTATGTAATGGGCGAAAACGAAA atacgaaaattttgaaagtataCTAACTAATGGTTgtatttgaataattt ttttttctgccgACTTCCTTTTTAACGGCGCCAAGTCTGTTGTATCAGTA GAATGAAACCATGCAAATTCCTACATACTCTCTTTTTTATATACAAGCAT ACCTTTAGCTCATACTTTGGCTCAAATtcggtaaaaaataagcataaatg ctaagcataccttttctaaaacgctgacctttttagggttacttttaaag ctatttgagctttcttAGACCAAGTCTACgcatataaataagcataaatt taggctgaaaatgaaattttgctaagcatattgagcctcgacccgatttt tccgtatgcttataaataaaaaagagtgtattttaTTGCCTTCAATAGAG AGTTAGATAAAAAGAGATTTCCTTCTCAACACAAATTTGTTGTGTTTTAT GGTTCCttcttaagattttatttccatCTACCTGATTATCCAGTTATCAT CCGTGTGGATTAAATTATCATAACcgaatttatttttgctttctttgttt ATCTATAACCGATCTACTACATTCCTTCTCCTTAatccttttaatgattt ttgaggatttttgaaagaatttctgtgcaagtttaaaagattttgttacA AAATATATTAAAAGAACGCTGTCCTCAATACTACGTATTTGGGGGCGAGG TTGAGAGGAtaccttttattttgaaagtttgtttATCTGTGAGCCCGATG GAACAcctatattttcaattaaaaattacTCTTGGTTTCTACAGccttat tttaatattttattaagAAAAGAGGGTGCAGCATATTGTCTCAAAAACAG AGTGATTTAGCCTAAAAATTGTCTCGTTGACACATCAACGCTTGCATCTC TTCCTTACTCTTCTTTGCTATGTATGTACTAGAGTGTATGAATGATGGAA AAGCCTAAACTAACTAAAGACGAGACTAAAGATACAATTTCTATAGTTTG ACTCGCTAATGCTTGAGCTAAGTGcctgaattttaaaattgtcTCTGCCC CGATTAAAAATCGAGTTAAAAGTTCTAACACCGGtgagttttcaaaatca aagtcGGTTAAATAGATATTTTAAAAACTCCACAAAGTCATTGAGACCAT GGTATGGATTGAGATGAGTTGGGTTGCAAGGTGATCAAAAATATGATAGC TATGTCTTAACTTTATGACGGttgaaacagaaaaaaaaatagattaaaTG TTTTATATTTACATCTTCAGACTGGTATTCGTAATCAATCGCAATCACAA AAACGTCGCATTCTCGATCTTGAAAACCAATTCGAAGATGCTCGAGTACG AATCGATAAACTTTTACAACGAAAATCGATTCGTCGAAATACATACGATT CGGTATCGAATTCTTCATCGTTCGTGACTCCTTCAGCTTCGTTTACATCG GAACGATCTTCGCATTCATCAAAAATGAACATCGATAGAAGCGATTCAAT GGATTCGACGTCCTCAACAGAATTACACAAAACACAAATCAACATCAATC CAGCGAATAATACTAAACAAACTTTCGGTACTGTTACACTTACAGTAAAA GTTGATGAAGATTAACGGGaatcgattgattgattgattgattgattgat tgattgattgattgattgattgattgattgattgattgattgattgattg attgattgattgattgattgattgattgattgattgaatgattgattgaa tgattgaatgattgaatgattgaatgattgaatgattgaatgattgattg aatgattgaatgattgaatgattgattgaatgattgattgattgattgat tgatctgTTGACAATGAAGGATCAGAGGGTAATGGTTCAAAATGTAATGT TTATTCTTTTTCACGATATTACAAATATTACTAACCTCGAATTCGTAAGG GACTGAAAAATCTATTTgcaaaaaagtgacaaaattggTACAGATCTTTC GAAATTTAGTATCTGATATTTCCCTCTCTTATCCATTTCTACCTACGACT AcatataccttattacacgaatatcaCTATTTACTATTTTATTACCacgg attgaaaaatttcgtgttaataaaaatccccttaattaaaaccagtcATG GTGTcagtccttgaaaaagcaataaaattcgtgttaatttttggagtgtt aatttcaaggccgttgaatacttgcctagtaatattcgtgtaacgTGTAA TAGGTATTATCCTCAATTTTCTAATTAAAATCAAGCGATCTTCCAAAAGT GCTGCATTATTGCAAAGTATCATGAAAATGTATAAAAGGGCATATTTTGT ACTCTCCATTTCGATTACTATATAATATTTAAATGGTTGTTAAAATCATC CAAAGACCCAGAACAACCTGGAAAATGTCTACCCAGTgagaatttcaacg taacttGTTTAATGTATATTATAAATTTTCTAGGGATTATTTTTCATGGA TTATTTTTCTTGTGATTATTATAATTAACAAAATTTCcccgtttcttttt ttttcgctcATGTTGTACAATGTTTAGAATTTATATAAGAGAAACTTACG GTTTATATAAAAATAGGTTATAGGGTtttttaaacgaaaaaaaattgttt tgttctttatttatgaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036850XLOC_036850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058491-exon-scaffold_311-1491911889:1202812..1203059TCONS_00058491-exon-scaffold_311-1491911889:1202812..1203059Clytia hemisphaericaexon
TCONS_00058491-exon-scaffold_311-1510915933:1202812..1203059TCONS_00058491-exon-scaffold_311-1510915933:1202812..1203059Clytia hemisphaericaexon
TCONS_00058491-exon-scaffold_311-1575043694:1202812..1203059TCONS_00058491-exon-scaffold_311-1575043694:1202812..1203059Clytia hemisphaericaexon
TCONS_00058491-exon-scaffold_311-1491911889:1205382..1206780TCONS_00058491-exon-scaffold_311-1491911889:1205382..1206780Clytia hemisphaericaexon
TCONS_00058491-exon-scaffold_311-1510915933:1205382..1206780TCONS_00058491-exon-scaffold_311-1510915933:1205382..1206780Clytia hemisphaericaexon
TCONS_00058491-exon-scaffold_311-1575043694:1205382..1206780TCONS_00058491-exon-scaffold_311-1575043694:1205382..1206780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1202812..1206780 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (27.9857 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.688144 0.0659565 0.436351 0.299403 0.184355 0 0 0 0.0430457 0.211301 0.36968 0.107799 11.5668 6.17512 2.30763 2.82199 4.38454 6.15275 12.0814 20.8129 3.25737 2.67107 5.55181 4.61042 2.0505 5.67172 19.5049 27.9857 8.49525 13.6107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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