TCONS_00058492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058492
Unique NameTCONS_00058492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058492 ID=TCONS_00058492|Name=TCONS_00058492|organism=Clytia hemisphaerica|type=transcript|length=4417bp
CCAAAATTTTAAACTCAAATGATTCATTTAGAAATTCAATAGAGATTATG
GCTGGTGAGCAAATAGCAGCAAAATATGAAAACTGGTTACGTCTGATGAC
ATTGATCCATTATGTTGGTttcgaaatttgtaaaaatattttacataacA
TTGAAAAATTGCCTGTGAATGGTGCACAGTTATATTTAGCATTGTTTCGT
CGGCAAAGAGAATTCAACAAATTATTACGAAAACAAGTGTTACACCAAGA
TCAATTCGATTTGATTTTCCCTGCCAATGGGTCAACTGATATTACACAAN
TGAATGGTGCACAGTTGTATTTAGCATTGTTTCGTCAGCAAAGAGAATTC
AACAAATTATTACGAAAACAAGTGTTACACCAAGATCAAATCGATTTGAT
TTTCCCTGCCAATGGATCAACTGATATTACACAATTTGATATCACTTTGT
TTACTCTCGTCATTACTGTAATgtttggaaaaaagaaatacaagGTAATT
GTTAACGAGTTAAAGAAATGGAGAAATGAGGAATTTCATCAAGGGGAAAT
TCTTATGAATCGGGTGGATTTTAATGCAAAATGGAATGCTTTTCTTTTAT
TGGCTACTCCTTATGGTGTCAATGTTGGAAAGTTTGTTGATTTGAAGACT
TGTGCCATGGATAAAATATCACAACACAATAACAGATTTATTTATGCCGA
AATTTTGAAGAATCGAGTCGAACAGAAACAACAAAAAGctTTCATCCGCA
AAGTTGTTGCCGTTTTTGTGAGCATTGTATTTTTGGTGCTGTCTTTTATG
GTTTACTTTCATGAGAATGGTGAATCAATATCTTTGGAAAAGCGAATCAA
TTCTTCATCGGcaattttaaagaaatactATATTCAAACTATTGGTCACC
AAAACCTCAAATCGATCCATGACATACATCGCTTGAAGAAACGATTTTAC
GTCGAACTTGCTATCGTGCCGAAAAACGAATCCGTGGGATATTTGCCAAC
CGTTTCTCGCCAGAAAGGAACTCTCACCATCGATCAATTGCTTAATGCTC
ACAAAACGAATAATATGGTTTTGATTCAAGGTCCTGGAGGTGTTGGTAAA
AGTTTCACTTTGGAGACTGCTGCATTGCATTGGGCTGAAGGGAAAATCTG
GCCGGAtgtcaaatttgtttttctgttgaaatttcGAGAGTTAAATCTTT
TCGTTGGAAAATCATTCAAAGATTCGCTTTTAGAAATATACGAGCAaact
ttcaaaagtttaaacTTTGATGATCTAGAAAATATTGCAGAAAAGGTTGT
ATTTTTGATGGATGGCATCGATGAGTTCTCAAGATTAAATGAAACACTTT
CACAAAAGCCCTATGGCAATGACAGCTCTGTTGCATCAGGTTTCtacaaa
cttttgaaatcgaaaTACCTACCTGGTCGCTTTTTATTGATTTCAGGTAG
AACCTTCTCGTGTGAAGAGATAAGATTGAATTTCCAAGAATTATCCATTA
AAAGTTTCAATATTCTTGGTTTCAATTCTCACCAAGTCGAGGAATACATC
AACACTTACTTCACATCTAATAAAACCAAATCATCGAATTTATTACGTGC
AATAAATCAAAACCCAAGACTGGAGTTAATGTCACAAACACCAGCATTTC
TTTGGTCCTTGTGCGAAGTACACGAATACACAGACGCATTGTCATGGGTA
GTTGCTGTCACacctttgtttgtttttcaactatctttcttctttcaacA
ACATTTACATACTTTTGATCCAAAAAGATTTCGTACGAGTCCAGTGAGTA
TCTTCAAAGATCCATCTGTCCAGAAATTGGTGTTTGGATTATCAAAAGTT
GCCAAAACTACACTGGAGAAAGGAGTTGTATTGATTGATTATAATGATGA
TTTAAAAAACTCGTTCAATCTAAGCCTGTTTGAACTGTCAGGTCTAGTGA
ACAGAGTGAAAACGACGTTTGgggaaaaaattgaatttagcCATATGCTA
ATGCAAGAATTCTTGACAGCTGTTTTCTTTGCTCAGGAATCAAATATCGA
TGACAAGGAACTTTTATACGAAGCTAAGTACAGTGGTGTTGCACCTCTTT
ATATTGGGCTTCTCGGTGGGTGCTTAGAAAACTCAAActcttcaaaatat
gttatcgACTTCGTTGCCCACCTTAATTTGTGCCAGTATTATCATGGTAA
CGGTTCGNGTTATCGACTTCGTTGCCCACCTTAATTTGTGCCAGTATTAT
GATGGTAACGGTTCGGTTTTCATTGAGCATGCTTCGAAGAAGTTAATTTT
CGAACAAGTGCTTTACGAATTCCAAAATGATTTAGAAACGCCAACGATGG
ACTTGTTTAGTGAAACAAATTTCAACAGAAGAGTTAATTTACTCTGGAAT
CCTGAAATGACATTTACAGGCGttgaattttataaaaaaactttcaaggc
GTTTCCTAAAGACCATTTCGATGGGAAATTTAAACAAATACCTTGCACAA
AATCAAAGTTTTATCTCGTGAATCAAGTTTTAGAAAGATGTGatattaga
aattttcaaaatataagtACATACATCGTAAATTGTGATTTGAAACATGA
CGATGCTGATGATGTGCGATATTTCTTACGTGGTTTCTATCACGATTTTT
CAACGATGAAACATTTATTCTTCAATCTAAAGTCAAAGTGTAAACGTTTT
CACGAAAAGTATAACAGAGTTGTAAAGTTTCAAAATGTTATTCAAtcaat
gaaatttcaaattaacaTGAGATGCGTGGATCACAGCTGCACCAAGAACA
ACTGGTTTGAAGAATATCTTATTTCAAAGCTATGTcgtaaaaatttcatt
aatgaACTACTTTACCTTGAAGACAGTTTCCATAGCAACTTTTTGTCAAG
GGATCTCATTTTTTGTACATTGGAAGGGTATGATATATTGAAAAGCCTTA
TAATCTACGAGTTTTTAAACCGCCTACAAACGTATAGTAGCTTTATCCCA
GCATCATCATTTTCCTGTTGCTTTGAAAAATCATTTGGAATATCAATGGA
AGATAAATTTTGCTGGCAGTCATTCAACGACCCTGAAGACAAACAATTCT
TGTGTGAAGCTCGTGCAAGGCTGGTAAAGACCTATGATCATCTTGCCGAG
TTTGCCAAGAATGAGAAATATCTAAACGAATCATCTTCTCACGAGTGTTC
TCTTCCGAAATNAGTTTTTGCCAAGAATGAGAAATATCTAAACGAATCAT
CTTCTCGCCAGTGTTCTCTTCCTAAATCACCACCTATCATTGTTCAAGAA
GACAACAACCATAGTATGTCACGAATAAAGTATTTCTTTAAATCAAACGA
TAATTATTACAGAGAACGGATCTATATTTTAAAGTTGGTCCGTTTGGACT
CTGTTGAAGATGTAAAGCCTATGTTGCCATATTTGTGTACCATTAACCAA
CTTATATTACAAGACTCGTGGAAATATGACCCCGATGCATTAAAATTACT
GATTACGACGTTGTCTCGATGTAATGAATTTTGGAATTCCAATATGCTAG
TTGTAGATTATTGTCTTGTTAGAAGTTCTCTTCATTACGTTACAGCAAAT
GAAATGGCATTGGGAGAGATAAGTAATATCCATACGCTGGTAGTTCGAAT
CATACGCAATAGTTATCGAGCAGTCAAACTCCTTCACAAAAATATACTTA
GGCATCACCTTTTACCGAATTTTTTCATACGGAAAATCAAATTACTCCTG
GTGACTTTGAAGTCGCATCCGTGCGTTCTTTTGCGAGATATCATGAAGCA
CGTATCACAGATTGAAATTATTCCATTTGACGAGTACTTATTTGGTGCAC
AGCAAGTGGAAAGTTGCAAAGAAGTTATTTTGTCCGAATTGAATAAAGGA
ATGATTTCACATTTGGAAAGCTTCATTTTACAAGAATGGCAAATTGTTAA
AAGTGATAATGGTTTTTATTGGGTACTACGCacagattttgattttaata
aacggCACGAAGACAAAGAAGATAGTAAAGATTTACTGAAGTTGGTATTA
ATTCTCAACTTCATATTATCAAACGTTtctcttcttccttttcttgcCAT
AACCTTTGGAGAAGATTATTTGAAATTGGCGAAAGTgattaatcaaatta
atagtgGACTATTAACAACTCCGGGCGACTTGCTAGACCAATACGAAAAG
ATTAGACGATTAAAATGGATAATAGTATTAAAATTGGCATTACTGACGGG
ATTATTACTATGTTCCTGTTTCCTGTCTTTTAGTTTTCTACGACACGGTG
TAGCTTTTCGTGATATTTGGGACGTtcgtatattttattttttaactatC
ATTTTAAGTTTGATTACATGGATTATATTTTAAGTTTGATTACATGGATT
ATATTTTAAGTTTGATT
Run BLAST on NCBI

protein sequence of TCONS_00058492-protein

>TCONS_00058492-protein ID=TCONS_00058492-protein|Name=TCONS_00058492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=744bp
MLSTSLPTLICASIIMVTVXVIDFVAHLNLCQYYDGNGSVFIEHASKKLI
FEQVLYEFQNDLETPTMDLFSETNFNRRVNLLWNPEMTFTGVEFYKKTFK
AFPKDHFDGKFKQIPCTKSKFYLVNQVLERCDIRNFQNISTYIVNCDLKH
DDADDVRYFLRGFYHDFSTMKHLFFNLKSKCKRFHEKYNRVVKFQNVIQS
MKFQINMRCVDHSCTKNNWFEEYLISKLCRKNFINELLYLEDSFHSNFLS
RDLIFCTLEGYDILKSLIIYEFLNRLQTYSSFIPASSFSCCFEKSFGISM
EDKFCWQSFNDPEDKQFLCEARARLVKTYDHLAEFAKNEKYLNESSSHEC
SLPKXVFAKNEKYLNESSSRQCSLPKSPPIIVQEDNNHSMSRIKYFFKSN
DNYYRERIYILKLVRLDSVEDVKPMLPYLCTINQLILQDSWKYDPDALKL
LITTLSRCNEFWNSNMLVVDYCLVRSSLHYVTANEMALGEISNIHTLVVR
IIRNSYRAVKLLHKNILRHHLLPNFFIRKIKLLLVTLKSHPCVLLRDIMK
HVSQIEIIPFDEYLFGAQQVESCKEVILSELNKGMISHLESFILQEWQIV
KSDNGFYWVLRTDFDFNKRHEDKEDSKDLLKLVLILNFILSNVSLLPFLA
ITFGEDYLKLAKVINQINSGLLTTPGDLLDQYEKIRRLKWIIVLKLALLT
GLLLCSCFLSFSFLRHGVAFRDIWDVRIFYFLTIILSLITWIIF
Run BLAST on NCBI

transcript from alignment at scaffold_311:1223938..1237165+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058492 ID=TCONS_00058492|Name=TCONS_00058492|organism=Clytia hemisphaerica|type=transcript|length=13228bp|location=Sequence derived from alignment at scaffold_311:1223938..1237165+ (Clytia hemisphaerica)
CCAAAATTTTAAACTCAAATGATTCATTTAGAAATTCAATAGAGATTATG GCTGGTGAGCAAATAGCAGCAAAATATGAAAACTGGTTACGTCTGATGAC ATTGATCCATTATGTTGGTttcgaaatttgtaaaaatattttacataacA TTGAAAAATTGCCTGTGAATGGTGCACAGTTATATTTAGCATTGTTTCGT CGGCAAAGAGAATTCAACAAATTATTACGAAAACAAGTGTTACACCAAGA TCAATTCGATTTGATTTTCCCTGCCAATGGGTCAACTGATATTACACAAN TGAATGGTGCACAGTTGTATTTAGCATTGTTTCGTCAGCAAAGAGAATTC AACAAATTATTACGAAAACAAGTGTTACACCAAGATCAAATCGATTTGAT TTTCCCTGCCAATGGATCAACTGATATTACACAATTTGATATCACTTTGT TTACTCTCGTCATTACTGTAATgtttggaaaaaagaaatacaagGTAATT GTTAACGAGTTAAAGAAATGGAGAAATGAGGAATTTCATCAAGGGGAAAT TCTTATGAATCGGGTGGATTTTAATGCAAAATGGAATGCTTTTCTTTTAT TGGCTACTCCTTATGGTGTCAATGTTGGAAAGTTTGTTGATTTGAAGACT TGTGCCATGGATAAAATATCACAACACAATAACAGGTatcaaaaattctt aaaaacagctttgaaggttttatttttacataactgttcccgtttcatat caagcacatattttatatcaggacagtgtctgcctattgttatattatgc tgatatatgcaaaaaaatgtttttcttttcctttttctgaccaatcttgc tccacactcgtgtcaatctaatgtgaaaaagttatgagtaagcaaacgat atcactcttatttaaaaacaaaacctttaaattttcaatgagtaacttat tggtatatattttcgcgtgttacaatttttcgcgggtacttaatttcgcg agttttttggtcaattttcgcgaaatttaatactgcttaagggctctgac catagtcagaaaattcattttagtatctgagcataaaaagttatgtttta gattctttaacacttttaacaaagaatttcctttataaattgctttttaa tcaaaccccttaagagtaattaagagcttaattgcaaaaatgacgttatg aactttaaaaagacgttaataatatgttgcaNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNtacaaattttcgcgggtacttaatttcgcgagttttt tggtcaattttcgcgaaatttaatactgtttaaatttttcaaaattacaa aatcgcgaaattaaattcgcgggaaaaaaattttcttagtattttgttag tttttttacatcaaaaacgttgtgtttcaagcaaaatcagtctttttcta gctttatattcccactttctgaaaatacctagtttagtgaatcgcgaaat ttaatacacgcgaaaaatttccagaagtcggcaaacgcgaaatttaatac acgcgaaacacgttttttcgagaagaagaagaaaatattgaaGTCATTAT ATCTTGATCTGCTTCGTAACATTAATATTCTCATTTTATTAGCACCCTCT GTAGTATGGATTTCAACTGTATCCCTAATTACTATGGGTAACCATTTTGG GTCTAATCATTCTCAACACCCAAACACTCGGGGCAGTTTGAATATGATGG GTTTTGATATCTGACACTAAACCAGTTTGGGTTGCTAGAAAATACTAAGG GCGATGGACGCCCCTACAGTTAGTCGCACTAGCGTCCCACcgaaatgcat atcaaagattaattcTGCGAAAGCGCtgtatcgtttacttgactcgcaag caataaaaatgctttcccggaaattttgccggacctgaAACACACGTGCA GAATTacttttactttagcgtataaacaaggccttaaaaattgaagcgct gtctcgggaattgaatgaaaaaatttggttggttgatacaCATATCATTT TAAGTTtacaagttttaattaattgtcttgggaacttgaacttgattcag gtaactctcatccttgttgttgcaaatacatcctgtagatgactgatgtt gttttatctaaaagcttgatttcctagtgtgactaactgccctATATTTA GAGGTCCTAGGCTGCGTGCATCCccagaattgattttgatatcaaATCAT AttagaggggatgcgtgcagcctagagGTGTCCTTGAATTAATTAATTGT GCCCATCTGCTTATTGGTATCTGTCAGTGATCGCATAACGTATTCAATTT TCAGATTTATTTATGCCGAAATTTTGAAGAATCGAGTCGAACAGAAACAA CAAAAAGGTAACGAACTTTCGTTTTCattcatctatatattaatagccgt agtctgtatgtcattttgtttgtttgtgtgtcactttcgttttcgcaagc aatgttttgttcttttaaaagatgacttttgcttCTTGCTCCACAAATGT GTTAAATCAGATTCGCGacgttttataaagactttgagttgttaagtttg ttttgattgatagattagactttttctttcttttctttcttttcttttgt ttttgttttaggttttcgaatgtaattaacgaccttatttgatttgagac attcgaattcttttcaaaacaaaagaaaatcttttaaacagattaaagaa aagaacaaatataaaataaaacataagaatcacaagacaagtttgttaga acaacagcaacattaaaaatacattcaaaaggcagTAAAAACTAGAGNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNctgtaaatctaagtcattgttgaatttga aaagttgtgacgaagttattttataaaaagcaacaacgcttttttgtctg cgtgtcctagttGCCTTCggggggggactatggttgcgagctgactttcg gccctgcccctcggacccttagcagaataaagaggagaagaaacaaggga aattatgtgaattttaattcactttttgggactaatttgaccaaatttct atctttttgggagcaaaaatttgaaaattttcctatttttccgattctta gtgagactgaagtttgattttccgatttttcaaactgtcattattaaaaa aaaaggcacccttaaggccggcacatacccatagccttctcttgcctaag tacccccccccggctGTCTTTCTTcgacgaatcgcgtgtcatgtctatta tttcactccgcttatcttgacatcaaagttttcctaaacatcaagagcTA CGGCAAAtgtaacgcgagcgaagcgagaaaaaaaatctaattgcagagcc gtctcggacgtcgctggtcgccagtgtggtgtaatttgggaatgacgcct ttctgattatttttgctacacaaatctttttgaaaatatggttaaaagat acgtcacccgggagggatagagtcaaactttgaaaataattcttcccttt aacctttccagcgcgcaacatttttataTCTTCAGCCCGTCTGCGCGCaa cgttttttgatgaaaatgcaattttcacgataaccgttataactttttga aaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNCCAATTTTGGACAGAAATTATGAAGCCAGACA AAAGGTATATGAAAAAACAATGTcgcgaaaaagtcattttttggtgcaaa acttcaaaaaattatagagaactgaaaaattgataaaaacacttactttt ttctttagaaggtTTCTTTATAGTTAGGTAATACAattccatacttttga aaagccaaataaaactctaaaacactttTATAAACCCTCACTTTCATAGC TACCTTTCTGCCTCCTCCAGTTTCACAAAATCACGCAACACAGCTTGGTC TaccatttctatttttgaaaaatgttgcgtCATACCAAAACAAACCCCGA TTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNATACCAAAACAAACCCCGATTGTTTCTTA TCGGAAATTTCACGCTGATTCCGATTTTTTAATCGGTTTTACCGTACCTC TGACGGTTGGGGCGTAATCCGACCAAATGTAAAGGTCACCTTAAAaacgt atcagatacgtctttcggaacgtatggcgaacgtatcagatacgtctttc gggGCGGAAAggttaattttgatttcatcgtgtttaagccacctttccaa catccaaaggactttaatgcgttcagcaaacagctaaagcCGCGTGCGat gccgggtaccggctagttcaATATATTTAGGTATTGTATAACTTCCAATT TCTTTAAGGTAATGTAGCAAAATTGTGACTTTACTAAAAATACACAAAAG TATCGATCAAAATCTTGTTCTTATATTTCAATATCGTTTCCATGGGATTC CATGACTTACCAGCAAACTTAAGGAAATTTCAGTTATTGTAGACCATTTT GAACCCAAGCGATTATTATAGGTTTTGGCGTTATTCAGTCCTTAATTTGC TTAGAGAAAATCAGGCAGTGAAGAGCCAGTCTTAAAGTGGCTGACGTTAA CTTAACCTTCAGGTCGGCGTAAAATGAgcctttaagggctctgaacatag tcgaaaaattgattttaatatttgaacataaaaattttgttttaggttct ttaacacttttaacaagtAATTGcttttataaattgctttttaattaaat cccttaagagtagttaagaatttaattgaaaaaatgacgttatgaactct aaaaagacgttaataatatgttgcatcatcttcttttataaaaagtgtta atgggtaattaacctttttgtttcgaatttttttcaaactgtccgcaaag aattgagcaaaagttatagctgttttttctatgaaaaattgggataaaaa attggtcaaaaagcactattttcaatattttgagacaaataagcttttat aaaaattttccgaaaatctataggtagtttggttaaagataaACCACCAT CTAGTgctaaaatcttttcaaaatgttttttcttcgccgaaattAAGGTC CTCAAAGTTAAAATAGTTAGTCTTCgcaaatgttttcattttcttcttca tcaaatttttcaatgcattttttgaattttcagattcaggaatagttggc ctaacagaaaaagtttaacatgccatagttttgtcggttacatcagtcag aaaaacacaatttatacacgacaattatgaaaaattcactatggacAGAG CCCTTAAAATATGTAGGAGtctattaaaaacaaaaaacttataattttca ttatttttcttttcagctTTCATCCGCAAAGTTGTTGCCGTTTTTGTGAG CATTGTATTTTTGGTGCTGTCTTTTATGGTTTACTTTCATGAGAATGGTG AGCATAGTTTTATTTTTGTGTATTTATAAGAAGGGGTAATATGAAACAAA TTCCGACGAGCTATATTGCTTTTAACCCTATTTGTAATAGGGAGGAGGAG TAGTTTTTTCTGTTCGGTTGGTAAACTATTGTTAATTAGTAGGGAGCAAA CCTTTAGGACCCATAacatcttttatgcgacgcaacCAAACCTAGTTCAT TTCAAcataactcgagaaaattgacGTAAAAGTTGcgttttgacgtcatt tttggatgattttgtcGAGTTATGTTTGGAAATCGGCTATATTCATTTAA AAATCCTCTATattgtttttcaaaagctttcgaTTGGTTTAAGTGGTTTC GGGTTTTATCGACTTTGAAATTTCGTCAAGTTCTAGGGGTCAAGTGATTT TACctgtgacgtcagtttttgaGTCCTAAAAAAATTTCCTAGGCCTACGC AGAAAACGCCCCTCGTGAAAAGctctttaaatacttcattctttGAAATG GAGCAGGTTTGGTTGCGTTGCATAAGATATGTCACGGGTCCTAAAAGTTT GCCCCCTACTAAATAGCtcctaaaataaaaaagctttagccacagggggg gggtcggtactaaaatctcagacatcatgacatttagtgacgtggtggta ctgcaaaaaagctcaaaaataattttagtaccatgtgtaNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNagggtggtcccttaaagaaatttttgaaaaatcttagtattttgttct aaaatcagccaaaatggagcatttttttaacaattttggaaaaaatttga ttctttttttcaggaattttcgaaaaaatcttcagaaatctttcagaatt tttccaattttaaatattttttaaaaaatatttttatgtacagttcagca cagtttagtaataaaattatattattttgcagattgatgcactaaattcg actagatttgtaacaatgaccccattttggtaaatttaaagtcgtaaaag ggcaaaaaatgggtggtatctatgttaaattgctcaaaataattttagta catgtgtactaaaataacattttcgaaaaataggtgggggtatgNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTAATTTTCC AGGGTTTCAACAAGTTTTTAAAGGGTTTTTTACCACAAACTTTCAAGGGA TTATAGTTGATCTTTGCTAGTTTTAGAGGATTTCAAGGGGAAATCTGTCG ACAACTTTCAAGGTTGAATCCTCAACTCCCTAAAATGCATAAAATACCCC TACGACGTTTTCTtcaacaaaatcataaaaacctTGAAATCTTTCGGACA AATTAGTCTTTTCCCTTGATTTTGAACGGAATCTCAATAACATTCTTCAA CAGATACTTTCTTTATAGTTGTGGCAAAGGAGGGCCCACCTATAGTGATA GACCTGCCCATCTCATAGCTCTAGTGGCACTTAACGGGTTAAAGGGTAAA CCCGTTAAGAATGAGCGTGGAATATCCCCTTGAATCTCAGAGGTTCCAAA AGTATGTTTTCTCATTTAATTCACTGATGTTTGTATCCCACGCAGtggga aaaattttgtatttctgaaagttaaaatggctgaaaatggtcacaaaatt tgtcattttaaGGGTTTCAAGGGTACAAATATTGCAcctcaagggtttca agggtttcaaggaaatTTTTAAGGGTAGGAAAAAAATGGAGGGTGTTTCA AGGAGTTCAAGGGTCGCTGGCCACCATgacttcatacaaaaacaacagcc cCCGCCCCCCACTTGTGAAAAtgcaggtacccccaaacatatcaggtacc cctaaatttaagaatacttccaagtacctggcttttttaacacttttttt taggtacccccaaatctCTGGGGGGGGTGGATCATATGAAGGCATGAGTG TATGTTACATTGAGCATTGGTTTCATTGTTTAAATTAATAAAACAATGAC CTAGCATTTGAAATTCACAATGCAATTTCTGATCCGCCACTAAAAGCCTT ATATAATAGGGCTAATCTGTGACTTCATATTTTAATACACATTTTGGACA TACCTCGGAGGCCCTTTAATTTAACCTTtagtttgttcgtccgtccgttc gtctgttaccagcttttctcaggattggtcCATTAGTTTTTACTGATTAT TTGTatagtgatgcaaaatgacagtaCTTAAAAAGTGAAGaacccaattt tcgaaaaaaagaaaatttgggaaaattttgaccaaaaagtgcctaaaaac ggtttttattttccactttgtgtgaaattgcttcattagttttttgtgtt tttttttttgcatacaGATAGAGggcaaggttttctaaaaagtgGCTCAA ACAGTTTTTATCGGGAAtattttttggccgtaaaaatcagGCTTTCTTAT TTAGGGAAATGATTCCCTTTTgccatttttagggaaaaagagcatttttt tGCGATTGGCTTCGTTTTATATGGGGCTCCTTATACCTCTAAAGCATCGG GTAACCAGCGTGAAACAAGTTTCGTCATGTTTTCAAGCTTATGCATCTCT ATGCTAtgtgttattatttttcatattcATTCAGCATGTTTCGGACTGCA CACATCTgctaggtccattcagcatgttgcttgttttatttataagcata acgcttataagcatagtCAGGTTTGAgattttgccttaaaaaatggatct atttttatagaaattatACAAGCCTCAACACATTAGGATGCAGAAATTAT CTGGTACAGTTTTTTGCTTTCCAAGAGTAATAATCTGATTTTGTAATTTA AAGTTTACGTTTTTTCAATGTCTATTTCAGGTGAATCAATATCTTTGGAA AAGCGAATCAATTCTTCATCGGcaattttaaagaaatactATATTCAAAC TATTGGTCACCAAAACCTCAAATCGATCCATGACATACATCGCTTGAAGA AACGATTTTACGTCGAACTTGCTATCGTGCCGAAAAACGAATCCGTGGGA TATTTGCCAACCGTTTCTCGCCAGAAAGGAACTCTCACCATCGATCAATT GCTTAATGCTCACAAAACGAATAATATGGTTTTGATTCAAGGTCCTGGAG GTGTTGGTAAAAGTTTCACTTTGGAGACTGCTGCATTGCATTGGGCTGAA GGGAAAATCTGGCCGGAtgtcaaatttgtttttctgttgaaatttcGAGA GTTAAATCTTTTCGTTGGAAAATCATTCAAAGATTCGCTTTTAGAAATAT ACGAGCAaactttcaaaagtttaaacTTTGATGATCTAGAAAATATTGCA GAAAAGGTTGTATTTTTGATGGATGGCATCGATGAGTTCTCAAGATTAAA TGAAACACTTTCACAAAAGCCCTATGGCAATGACAGCTCTGTTGCATCAG GTTTCtacaaacttttgaaatcgaaaTACCTACCTGGTCGCTTTTTATTG ATTTCAGGTAGAACCTTCTCGTGTGAAGAGATAAGATTGAATTTCCAAGA ATTATCCATTAAAAGTTTCAATATTCTTGGTTTCAATTCTCACCAAGTCG AGGAATACATCAACACTTACTTCACATCTAATAAAACCAAATCATCGAAT TTATTACGTGCAATAAATCAAAACCCAAGACTGGAGTTAATGTCACAAAC ACCAGCATTTCTTTGGTCCTTGTGCGAAGTACACGAATACACAGACGCAT TGTCATGGGTAGTTGCTGTCACacctttgtttgtttttcaactatctttc ttctttcaacAACATTTACATACTTTTGATCCAAAAAGATTTCGTACGAG TCCAGTGAGTATCTTCAAAGATCCATCTGTCCAGAAATTGGTGTTTGGAT TATCAAAAGTTGCCAAAACTACACTGGAGAAAGGAGTTGTATTGATTGAT TATAATGATGATTTAAAAAACTCGTTCAATCTAAGCCTGTTTGAACTGTC AGGTCTAGTGAACAGAGTGAAAACGACGTTTGgggaaaaaattgaattta gcCATATGCTAATGCAAGAATTCTTGACAGCTGTTTTCTTTGCTCAGGAA TCAAATATCGATGACAAGGAACTTTTATACGAAGCTAAGTACAGTGGTGT TGCACCTCTTTATATTGGGCTTCTCGGTGGGTGCTTAGAAAACTCAAAct cttcaaaatatgttatcgACTTCGTTGCCCACCTTAATTTGTGCCAGTAT TATCATGGTAACGGTTCGNGTTATCGACTTCGTTGCCCACCTTAATTTGT GCCAGTATTATGATGGTAACGGTTCGGTTTTCATTGAGCATGCTTCGAAG AAGTTAATTTTCGAACAAGTGCTTTACGAATTCCAAAATGATTTAGAAAC GCCAACGATGGACTTGTTTAGTGAAACAAATTTCAACAGAAGAGTTAATT TACTCTGGAATCCTGAAATGACATTTACAGGCGttgaattttataaaaaa actttcaaggcGTTTCCTAAAGACCATTTCGATGGGAAATTTAAACAAAT ACCTTGCACAAAATCAAAGTTTTATCTCGTGAATCAAGTTTTAGAAAGAT GTGatattagaaattttcaaaatataagtACATACATCGTAAATTGTGAT TTGAAACATGACGATGCTGATGATGTGCGATATTTCTTACGTGGTTTCTA TCACGATTTTTCAACGATGAAACATTTATTCTTCAATCTAAAGTCAAAGT GTAAACGTTTTCACGAAAAGTATAACAGAGTTGTAAAGTTTCAAAATGTT ATTCAAtcaatgaaatttcaaattaacaTGAGATGCGTGGATCACAGCTG CACCAAGAACAACTGGTTTGAAGAATATCTTATTTCAAAGCTATGTcgta aaaatttcattaatgaACTACTTTACCTTGAAGACAGTTTCCATAGCAAC TTTTTGTCAAGGGATCTCATTTTTTGTACATTGGAAGGGTATGATATATT GAAAAGCCTTATAATCTACGAGTTTTTAAACCGCCTACAAACGTATAGTA GCTTTATCCCAGCATCATCATTTTCCTGTTGCTTTGAAAAATCATTTGGA ATATCAATGGAAGATAAATTTTGCTGGCAGTCATTCAACGACCCTGAAGA CAAACAATTCTTGTGTGAAGCTCGTGCAAGGCTGGTAAAGACCTATGATC ATCTTGCCGAGTTTGCCAAGAATGAGAAATATCTAAACGAATCATCTTCT CACGAGTGTTCTCTTCCGAAATNAGTTTTTGCCAAGAATGAGAAATATCT AAACGAATCATCTTCTCGCCAGTGTTCTCTTCCTAAATCACCACCTATCA TTGTTCAAGAAGACAACAACCATAGTATGTCACGAATAAAGTATTTCTTT AAATCAAACGATAATTATTACAGAGAACGGATCTATATTTTAAAGTTGGT CCGTTTGGACTCTGTTGAAGATGTAAAGCCTATGTTGCCATATTTGTGTA CCATTAACCAACTTATATTACAAGACTCGTGGAAATATGACCCCGATGCA TTAAAATTACTGATTACGACGTTGTCTCGATGTAATGAATTTTGGAATTC CAATATGCTAGTTGTAGATTATTGTCTTGTTAGAAGTTCTCTTCATTACG TTACAGCAAATGAAATGGCATTGGGAGAGATAAGTAATATCCATACGCTG GTAGTTCGAATCATACGCAATAGTTATCGAGCAGTCAAACTCCTTCACAA AAATATACTTAGGCATCACCTTTTACCGAATTTTTTCATACGGAAAATCA AATTACTCCTGGTGACTTTGAAGTCGCATCCGTGCGTTCTTTTGCGAGAT ATCATGAAGCACGTATCACAGATTGAAATTATTCCATTTGACGAGTACTT ATTTGGTGCACAGCAAGTGGAAAGTTGCAAAGAAGTTATTTTGTCCGAAT TGAATAAAGGAATGATTTCACATTTGGAAAGCTTCATTTTACAAGAATGG CAAATTGTTAAAAGTGATAATGGTTTTTATTGGGTACTACGCacagattt tgattttaataaacggCACGAAGACAAAGAAGATAGTAAAGATTTACTGA AGTTGGTATTAATTCTCAACTTCATATTATCAAACGTTtctcttcttcct tttcttgcCATAACCTTTGGAGAAGATTATTTGAAATTGGCGAAAGTgat taatcaaattaatagtgGACTATTAACAACTCCGGGCGACTTGCTAGACC AATACGAAAAGATTAGACGATTAAAATGGATAATAGTATTAAAATTGGCA TTACTGACGGGATTATTACTATGTTCCTGTTTCCTGTCTTTTAGTTTTCT ACGACACGGTGTAGCTTTTCGTGATATTTGGGACGTtcgtatattttatt ttttaactatCATTTTAAGTTTGATTACATGGATTATATTTTAAGTTTGA TTACATGGATTATATTTTAAGTTTGATT

Coding sequence (CDS) from alignment at scaffold_311:1223938..1237165+

>TCONS_00058492 ID=TCONS_00058492|Name=TCONS_00058492|organism=Clytia hemisphaerica|type=CDS|length=2235bp|location=Sequence derived from alignment at scaffold_311:1223938..1237165+ (Clytia hemisphaerica)
atgttatcgACTTCGTTGCCCACCTTAATTTGTGCCAGTATTATCATGGT
AACGGTTCGNGTTATCGACTTCGTTGCCCACCTTAATTTGTGCCAGTATT
ATGATGGTAACGGTTCGGTTTTCATTGAGCATGCTTCGAAGAAGTTAATT
TTCGAACAAGTGCTTTACGAATTCCAAAATGATTTAGAAACGCCAACGAT
GGACTTGTTTAGTGAAACAAATTTCAACAGAAGAGTTAATTTACTCTGGA
ATCCTGAAATGACATTTACAGGCGttgaattttataaaaaaactttcaag
gcGTTTCCTAAAGACCATTTCGATGGGAAATTTAAACAAATACCTTGCAC
AAAATCAAAGTTTTATCTCGTGAATCAAGTTTTAGAAAGATGTGatatta
gaaattttcaaaatataagtACATACATCGTAAATTGTGATTTGAAACAT
GACGATGCTGATGATGTGCGATATTTCTTACGTGGTTTCTATCACGATTT
TTCAACGATGAAACATTTATTCTTCAATCTAAAGTCAAAGTGTAAACGTT
TTCACGAAAAGTATAACAGAGTTGTAAAGTTTCAAAATGTTATTCAAtca
atgaaatttcaaattaacaTGAGATGCGTGGATCACAGCTGCACCAAGAA
CAACTGGTTTGAAGAATATCTTATTTCAAAGCTATGTcgtaaaaatttca
ttaatgaACTACTTTACCTTGAAGACAGTTTCCATAGCAACTTTTTGTCA
AGGGATCTCATTTTTTGTACATTGGAAGGGTATGATATATTGAAAAGCCT
TATAATCTACGAGTTTTTAAACCGCCTACAAACGTATAGTAGCTTTATCC
CAGCATCATCATTTTCCTGTTGCTTTGAAAAATCATTTGGAATATCAATG
GAAGATAAATTTTGCTGGCAGTCATTCAACGACCCTGAAGACAAACAATT
CTTGTGTGAAGCTCGTGCAAGGCTGGTAAAGACCTATGATCATCTTGCCG
AGTTTGCCAAGAATGAGAAATATCTAAACGAATCATCTTCTCACGAGTGT
TCTCTTCCGAAATNAGTTTTTGCCAAGAATGAGAAATATCTAAACGAATC
ATCTTCTCGCCAGTGTTCTCTTCCTAAATCACCACCTATCATTGTTCAAG
AAGACAACAACCATAGTATGTCACGAATAAAGTATTTCTTTAAATCAAAC
GATAATTATTACAGAGAACGGATCTATATTTTAAAGTTGGTCCGTTTGGA
CTCTGTTGAAGATGTAAAGCCTATGTTGCCATATTTGTGTACCATTAACC
AACTTATATTACAAGACTCGTGGAAATATGACCCCGATGCATTAAAATTA
CTGATTACGACGTTGTCTCGATGTAATGAATTTTGGAATTCCAATATGCT
AGTTGTAGATTATTGTCTTGTTAGAAGTTCTCTTCATTACGTTACAGCAA
ATGAAATGGCATTGGGAGAGATAAGTAATATCCATACGCTGGTAGTTCGA
ATCATACGCAATAGTTATCGAGCAGTCAAACTCCTTCACAAAAATATACT
TAGGCATCACCTTTTACCGAATTTTTTCATACGGAAAATCAAATTACTCC
TGGTGACTTTGAAGTCGCATCCGTGCGTTCTTTTGCGAGATATCATGAAG
CACGTATCACAGATTGAAATTATTCCATTTGACGAGTACTTATTTGGTGC
ACAGCAAGTGGAAAGTTGCAAAGAAGTTATTTTGTCCGAATTGAATAAAG
GAATGATTTCACATTTGGAAAGCTTCATTTTACAAGAATGGCAAATTGTT
AAAAGTGATAATGGTTTTTATTGGGTACTACGCacagattttgattttaa
taaacggCACGAAGACAAAGAAGATAGTAAAGATTTACTGAAGTTGGTAT
TAATTCTCAACTTCATATTATCAAACGTTtctcttcttccttttcttgcC
ATAACCTTTGGAGAAGATTATTTGAAATTGGCGAAAGTgattaatcaaat
taatagtgGACTATTAACAACTCCGGGCGACTTGCTAGACCAATACGAAA
AGATTAGACGATTAAAATGGATAATAGTATTAAAATTGGCATTACTGACG
GGATTATTACTATGTTCCTGTTTCCTGTCTTTTAGTTTTCTACGACACGG
TGTAGCTTTTCGTGATATTTGGGACGTtcgtatattttattttttaacta
tCATTTTAAGTTTGATTACATGGATTATATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036851XLOC_036851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058492-exon-scaffold_311-1491911889:1223938..1224622TCONS_00058492-exon-scaffold_311-1491911889:1223938..1224622Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1510915933:1223938..1224622TCONS_00058492-exon-scaffold_311-1510915933:1223938..1224622Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1575043694:1223938..1224622TCONS_00058492-exon-scaffold_311-1575043694:1223938..1224622Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1491911889:1226642..1226694TCONS_00058492-exon-scaffold_311-1491911889:1226642..1226694Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1510915933:1226642..1226694TCONS_00058492-exon-scaffold_311-1510915933:1226642..1226694Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1575043694:1226642..1226694TCONS_00058492-exon-scaffold_311-1575043694:1226642..1226694Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1491911889:1230054..1230134TCONS_00058492-exon-scaffold_311-1491911889:1230054..1230134Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1510915933:1230054..1230134TCONS_00058492-exon-scaffold_311-1510915933:1230054..1230134Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1575043694:1230054..1230134TCONS_00058492-exon-scaffold_311-1575043694:1230054..1230134Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1491911889:1233568..1237165TCONS_00058492-exon-scaffold_311-1491911889:1233568..1237165Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1510915933:1233568..1237165TCONS_00058492-exon-scaffold_311-1510915933:1233568..1237165Clytia hemisphaericaexon
TCONS_00058492-exon-scaffold_311-1575043694:1233568..1237165TCONS_00058492-exon-scaffold_311-1575043694:1233568..1237165Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058492-proteinTCONS_00058492-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1223938..1237165 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.385382 tpm) - - (2.07623 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18877 1.19213 0.706407 0.775162 1.73956 0.88048 1.5392 1.67437 0.802827 1.05603 1.21293 0.926477 0.891546 0.920056 1.07717 1.12514 1.13292 1.25851 0.385382 0.656493 0.953736 1.24053 1.01502 1.17767 1.33065 2.07623 0.658954 0.629227 1.39431 1.45872
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
5001000150020002500300035004000Sequence
Match NameE-valueIdentityDescription
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