TCONS_00058494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058494
Unique NameTCONS_00058494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058494 ID=TCONS_00058494|Name=TCONS_00058494|organism=Clytia hemisphaerica|type=transcript|length=721bp
tACGGACCTTGTGGACCAATAGATTAGCTCATTTTTGACTAATCAGAGCC
GTGTATTTTAAGGGCATTGGGCACTACTTTCGATATTTCACTCCTGTTCA
GGGAAAAAAACTGGAAGAAGGAAGCACCACACTGACACGAAAAAAGGCAG
CAAAGTATTTAACGTTGAATGTTTTTTAGCAAACATGACAGAGgCTTATC
TGCTTCTAAATTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATG
TTCTCACACGATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTG
GATATGGATTGGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCA
AGTCGGACACTCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaaca
aagaaaatgaaaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAA
TTTCTCCATGAAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTA
AAAGGTAAGTAATTTATATGTAGATAGAGTTATAATACTATGttactttt
gtatttttcacaatcattatttttttcagtggaACCCAGCTTAGCAGTTT
TACAATTTTATcaacagtttttcttttttgatggaAATAAGAATACCTTT
CTCATTACCATACCAGCTTCTTTGATTAGTACTGCAACTTAGTTACTGTG
TGGCCTGgtttattttgacat
Run BLAST on NCBI

transcript from alignment at scaffold_311:1255243..1263407+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058494 ID=TCONS_00058494|Name=TCONS_00058494|organism=Clytia hemisphaerica|type=transcript|length=8165bp|location=Sequence derived from alignment at scaffold_311:1255243..1263407+ (Clytia hemisphaerica)
tACGGACCTTGTGGACCAATAGATTAGCTCATTTTTGACTAATCAGAGCC GTGTATTTTAAGGGCATTGGGCACTACTTTCGATATTTCACTCCTGTTCA GGGAAAAAAACTGGAAGAAGGAAGCACCACACTGACACGAAAAAAGGCAG CAAAGTATTTAACGTTGAATGTTTTTTAGCAAACATGACAGAGGTATCAA CTTCATCAATAAGTTCTGCAGAGGTTCAAATTTTAAATAGGTTTCCAGAG GAGTCGTTTAATGAATTTATTCAACTTGTATTTGATTTTCTGTTAAATCC GAAAGACGCATCCAAACTTTTGGAtgatttgcatatattttgTGAGAATG CTGGGGCATCAGCTGGAGCTGTTAAGAATCTAGTAAAATTACTGATCTCA TATTTGAGggaaaaactgaagaaaaatgtttcaagtaACTCTATCAATGA TCAACTTGAAAAGCTAGGTAAGATTTTGTATCATCATTAGCGGCAATcgc aaatattttcatttcgcgtcctcgttgggtctaaaaagtgagtcggtcgg tcgtaaaaaaTTTCGGGTTTCTATTTTTCCATCCATGTTTGGagtgcatt cttggaggaaaATGCCatccagccagcagccaaaacaaccgcgtgtaatg gcagttagtcacactaggaaatcaagctttcaaaaaaaaacaacaacatc agtcatctacaggatgtatttgcaaaacaaggatgagagttacctgaatc aagtttgcaagagAATTAtaataattaaaatttgaaagtttgaaacaaaa tgaaacgtgcagcagccaaaatcacccaatcaaaatttgtcattcaattc ccaagacagcgcttcgatttttaaggccttgtttatataccctaaagtaa aaacaattccgcacatgtaaatgggtcagtgtttgaggtccggcaaaatt tttgggaaatagcctatccggtaGTGCGCGTATCTAGGTGGATTCCGTCT cccctgtagatctttttcttgggaagttgatcttcaaattagttctcaag aTTGGCTAGGCTCAAATTTTTTATCTATGACTCAAACTTTagcagtgcgt cacaaacagccacataaacaaaactcaacattctcacaaaagttgtcttt ttgatttccaaaacatttgtctaaagcgttcacttccacaataatttatg taattgcaatttcggtcagtccacagtcggcttcaacatatacacgtgtt tttatttacgtgaccgaagtgcctactaaaacaatccgggggtaagtggc aaagaaacacagcagattattcgtaaagtaaagaaatatcttttggcatt gacaatcaaatataatatattatattatatttccttaattaaaaaatcaa aaattcatttttcatttgcacaaaaataaaaataaaagaataatgaatta atattacatactaagacgcccccgtcttttactctcttttaatttccgat ctcggaacgtgcaatAATACGCCCGTctgcccaatatccacccaatcagc ttaaattcactttaattgtcctttgactttcaaaaaatagtacagtattt aaaaattatgaattttaataattacaaaaaacaaaaagtttgatacttca ttagtctgcattagtgaaatattcaataaattcctaatttcaattttcag tgggcgtttttctagggcttcgtttatcacgcaatttttgcgtcacgcAA ACTTTCTCAGCCggtcgtaataattatgcattgccaaatttggttctcca ttgtcaagtcaggatcgatggtgacaaaagaaatgattttgtcggtttta tgcatatattaatttgcaagGTATTTTATTTGCTGCGcaagcgcactttt cgtagactagtcggaatactttcttttactcgctggattgatggtaactt ttcatcttcgttatttttaaaatgaagcataaccgaaaaaaaacaaaact tcaggaagttgcgtatttccagtgagtaaacgattctgacaattaacaaa attgatgatgattattttttttcggtcaggcaaatgtctcgtattggggg ttctagtcttgacccctaagcctacgcaagattgaagcgtttgggtaaac aagacaaaactccaaaaaagctggtgtttttgaagcgcttccgtgcgatc gaaatatcgctgtttgtgacgcactgtttaggcaatttctcatagttttt gagaatgttaatttcattaaaaagcgccaggttattttttcatgaatccc tttagatgttttgccagggggggggggtcttgcagttactccttgacact atgtggagtaactgcaattttggacattttctacagacaccaccaccctt gcagttgtTCCaaagtgtactaactgattttaccctcaaaataggtgtat accacccccaaaaatggcaattttttcactgaattcctcatttttgatac cattttactgggtacgtcttattaacgaccgttcaagagttaaatatctc aattatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNgaaatcctactttgacaataatttgcgctgtaccgca aaatttctaagtccaagtgttgtgattagctttagactgtccaatatttc ttgtccagaagatttaaaCTGCATTGTTTGCAGTATCTCATAAATTATCA CCCTAGTAATGTTGCTTAGTTATTTAAGAATAAACAAGTAAGACTGTTAG TGTACACTATTATAgagatattggacagtctaaaagCTAATCAtgacact tggacttagaaattttgcggtaaagcgcaaattattgtcaaagtaggatt tctgaatgagtctaaaaagtttttgaataggNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNgtccactggtggagtaactgttt tcccaaattttggtttatataccaccacggtagtaattgtcatagtgttt atataataactgcatgaccccccccctggttttgcagcacatttttttgc ttgagagtcaggtaaacgatatagcactttcccagcattaatctttgata cgcatttcggtggaacgctagtgtgactaactgaatgggtggtttaaaat tatggactttgaacactgtgacctccgacccaaaaatggcgcatgtaatg ataaacaaagtcaaaattctGTGAATGCACTAGAAattggcaataataaa atttttgaacgaaggaaagttaactgacagaaaaagtccgacaaatttat cgactcaccgactcaattctactcaattttcgagagtcggtcgggcgaca cgaaacaaagatatttgtgattgccttattattattattggcTGTTATga aattccttataaaaagaagtTCTTCTACAAAAAGACGCTTAAAAAAACGA CATGGAAAAAGTTGTTCAAAAttaaatcattttattttaacaatttCATA AACTACGTCACAACCGCGGAGCGCTGacttttttatcactttttctCAGT CATTTCCATTTGGTttccgtaataaaaagaaagacgtTAATTGTGAACTT AAAACATGCTTAAAGTCAAGGTACTTCTACTAACTGTCTTTATGTGGGAA AGTTGCAAGATCACCAAAGATCATCTCAAAAAAAAGATCACCCAGCTTAT TTctagaaataagaatttttttggccCTGGTTTCACAATGAGGCCCTGGT ACCAACAATACGTCTACATTAGCACGACAAAATAGCAAgccatttatttt caatttccgaTAGATTTGATCTctgccaaattttgaaaatccatttttca agcttttttcACTGAACAACCAACCAACTCATATTTTTTACCCAAAAATG ATGCCAACACCTGCCAGCACAAGTTTTTTGTGATCGCAACCTTAACAAAA TTTATGCTAgaagtaattagttattcaagaGACTGTTGTCAGTATagccc taactcttcatacaaaatttaTGGGAAAGGTATATTAGATTTTGTACCAA ATGCTGCACACAAGCACTTAGGCTAAAGTCCTAGAATAGCAGGACAAAAA TTAGTCTTTTGAAGTTTTCATTAAATTTCCACGTATATATAAGATCTTTc gaattcagtatgtgaatagagcagtaaaaaatgcaacttttctatgtttc cttttttttgcaaaagtaccaGTGATGAAAAGAAAGggtaaattaaataa ttgaatataataaataataaaatgataattgaatactgaTGATCCACAGC ACTATGGCGAAGCTAGAATTGCTTTGTgtactctttgcttgagaaaataa aatgattgacagattaattttttcacccgtGAGGGAGTTTGCAGGTGTTC TGGGGGCATGGCTTTTTTCAACTTGCCCAAATTCTTGAACTGTGGCAGGT TGTTACATCTGACAAATTAATGCTTGTTTTATACTTTTAtttccattgaa gaatcatactCTGGCTTTTATTTTACTAAGTGCCCTTTATAGTTTTAgag tatatttgttttgttctcCCAAACCACTATTGACAAACTTTCTCAGGCAG TCTGAACCATATTTTTCTAGATCTTTACCTTATCACAATATCACTTTGAC TCCAAAAATTTGCTTTTAGTAAATGACTCCAAAAAGAATTTAAGGCTTCA ATGGAAAAAAGATTGAGAAcaagttgagaatattttaaggctttggggac ctTAAACCATCTATTTTATTAGGAAGACAGACAATACTCactaaatgttg aaaataaaaacatgttaagaactttttagacttaaaactaaaattaagaa cataattaattgttaaataaaattgttttttattaaggCTTATCTGCTTC TAAATTGGAGATTATCCTTGAGAAATGGAAGCAATATAATAATGTTCTCA CACGATCAATGGCAAATCAAGTTTTCAATATCAATCAACTTGTGGATATG GATTGGAAATTTGGAGTAACTGCCGCAACATCAGATGAAGGTCAAGTCGG ACACTCTTTCATTCAATTAAAACTTGTGATTGACAaaggaaacaaagaaa atgaaaacgtttGTTTAGAACTGACTCTACCACAATTTTATGAATTTCTC CATGAAATGcaaaaggcaaaaaatagttTAGAGTTACTTGGTTAAAAGGT AAGTAATTTATATGTAGATAGAGTTATAATACTATGttacttttgtattt ttcacaatcattatttttttcagtggaACCCAGCTTAGCAGTTTTACAAT TTTATcaacagtttttcttttttgatggaAATAAGAATACCTTTCTCATT ACCATACCAGCTTCTTTGATTAGTACTGCAACTTAGTTACTGTGTGGCCT Ggtttattttgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036852XLOC_036852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058494-exon-scaffold_311-1491911889:1255243..1255435TCONS_00058494-exon-scaffold_311-1491911889:1255243..1255435Clytia hemisphaericaexon
TCONS_00058494-exon-scaffold_311-1510915933:1255243..1255435TCONS_00058494-exon-scaffold_311-1510915933:1255243..1255435Clytia hemisphaericaexon
TCONS_00058494-exon-scaffold_311-1575043694:1255243..1255435TCONS_00058494-exon-scaffold_311-1575043694:1255243..1255435Clytia hemisphaericaexon
TCONS_00058494-exon-scaffold_311-1491911889:1262880..1263407TCONS_00058494-exon-scaffold_311-1491911889:1262880..1263407Clytia hemisphaericaexon
TCONS_00058494-exon-scaffold_311-1510915933:1262880..1263407TCONS_00058494-exon-scaffold_311-1510915933:1262880..1263407Clytia hemisphaericaexon
TCONS_00058494-exon-scaffold_311-1575043694:1262880..1263407TCONS_00058494-exon-scaffold_311-1575043694:1262880..1263407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1255243..1263407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (7.24502 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38834 2.94488 4.56992 7.24502 0.647269 0 0.498874 0 0.636804 0.829306 0.884982 0.724187 1.49735 0.187728 0.349272 2.41299 0 1.68068 0.793055 0.745982 0 0.950977 2.82254 3.37881 0 0.360333 1.07552 0.668843 0 3.21592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700Expect = 7.87e-29 / Id = 54.55SequenceCOMD7
Match NameE-valueIdentityDescription
COMD77.865e-2954.55COMM domain-containing protein 7 OS=Homo sapiens G... [more]
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