TCONS_00058510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058510
Unique NameTCONS_00058510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058510 ID=TCONS_00058510|Name=TCONS_00058510|organism=Clytia hemisphaerica|type=transcript|length=1597bp
cTCGTTTAACTTGACCTtgaaaacttttattttctatGGATTACATCATT
TCCAACcaatcaaagtttttaaaattcgTGAGAAGATAAACACGGCTTTC
AAGGAGAGcaaaaatggtggaaaatgGAGGCTGCAGTCAGAAGTTATGAT
GGATGAAAGATTACTGAAAATTGTGTTAAATTTTCTAACTGTTAACctct
atttttcaaatgttaattATGGAGTTGGATGAAATTCATAGGGGAAGATG
AAATTGTGGGACTGTAGTGTAAGGATTGCTCTTTCTTCTGGTACCTTACA
CTCCAGTACACTTTTAGGTTATGGCCTACACTATGGGGTTTTATATGATG
AATTTCTTGTTTTTCTGCcgttatttttctcaaattttgcctcGATTTAG
ATCttccgaaaaattgaaaacttatttGGAAATAAGAAAGGTGTTTCTGT
TATGTTTAAATGTGAAATTTCCACTGATTTTGTGTGGTacggaaagaaat
ttttgttcttttaacaTGGTGGAATTAATGTCAATATCAACAACCCAGAC
CAGCTCGAAAATTGTATTTCATATGTGATCCTCCCCATCTGATGAAAACC
ACCAGAAACAACTTGGAGAAGTCAAGCTCAAAGTCTACTTCTAGAAATCT
AATGtGTGATGGTCAAAGTTTATCCTGGGGTCAAATAATAAATCTTTATG
AATGGGATTTAGGGATGGAGAGAGATGCCATTGGTCTGACAATGGGTCAC
CATTTGACTGAGGAGCATATCAATTTGAATCCGAGATCACGCATGAGAGT
TTACTTAGCAGTGCAAGTTCTCAGTGCTACTGTAGTCAACATGTTGGATG
AGCAGGATCTCCATACCACAAAATCTTTGAGGACATTTATTTCCCACATG
AACAGATTCTTCGATTGTTTAAACGTCTCCAAGTCTGATGAAAAATCTAA
CAACCTAGATAAGCACAAGTACAGGGGAGCAGACGACGAACGCTTTGGGT
GGTTGGTCACAACATTTTTGAAGTACCTTAATGATTGGGAGGCGCACTGC
TACAGCATCCCAAATTTGACgaaaattgaacaatcaaaattatgtCTCAG
TCACCAAACACTGGAAGGACTTCGAATAACAGTTCGTTCATTCATCGAAG
TATCAAAAGTGATGTTCAACGAAGGTGCCAAATATATTCTATCAGAGAAA
TTAAGTCAGGATCCACTTGAGGAATATTTTGGGAAGCAGAGAATGCGACT
CGGATGTAATGAGAATCCAACGCTTAGTCAGTTTAATTTTAATGCTCTCG
CAATCGGAGTTGCTGGCGATTTATTGGTTCGACCTGAAGGGAACAGTCGG
GGTAAACATAACGAGCAGAAAATCATCGACGTTAACGATATGTCACTTCC
CCCCAAAAAGAAGACAAAACCTTCTTAAAAACCACTCAGTACAAACAATC
GAAGTTTATaaacattttagaatttttaatcCTGATGATAAGCGAAACTG
TCATAGCagctaaataattttttgtctgttctttactgattgatataatt
ttgtttaTGAATTTTTGTCAACTGAACAAtaatattacatattacaa
Run BLAST on NCBI

transcript from alignment at scaffold_311:30561..35998-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058510 ID=TCONS_00058510|Name=TCONS_00058510|organism=Clytia hemisphaerica|type=transcript|length=5438bp|location=Sequence derived from alignment at scaffold_311:30561..35998- (Clytia hemisphaerica)
CTCGTTTAACTTGACCTTGAAAACTTTTATTTTCTATGGATTACATCATT
TCCAACCAATCAAAGTTTTTAAAATTCGTGAGAAGATAAACACGGCTTTC
AAGGAGAGCAAAAATGGTGGAAAATGGAGGCTGCAGTCAGAAGTTATGAT
GGATGAAAGATTACTGAAAATTGTGTTAAATTTTCTAACTGTTAACCTCT
ATTTTTCAAATGTTAATTATGGAGTTGGATGAAATTCATAGGGGAAGATG
AAATTGTGGGACTGTAGTGTAAGGATTGCTCTTTCTTCTGGTACCTTACA
CTCCAGTACACTTTTAGGTTATGGCCTACACTATGGGGTTTTATATGATG
AATTTCTTGTTTTTCTGCCGTTATTTTTCTCAAATTTTGCCTCGATTTAG
ATCTTCCGAAAAATTGAAAACTTATTTGGAAATAAGAAAGGTGTTTCTGT
TATGTTTAAATGTGAAATTTCCACTGATTTTGTGTGGTACGGAAAGAAAT
TTTTGTTCTTTTAACATGGTGGAATTAATGTCAATATCAACAACCCAGAC
CAGGTAAAGGTTTTTGTTTTTCTTCATAATGAGTATTAATTCTTCAATTC
TCACAGTTCTTTCTAGAATATAAATATTGAAATAAATAAAGACATAACAT
AAACTGATAGCCCTGCTGAATTTTGACTGGACTTTTTGGACTTTCCTTTC
TGCCAACCGATTTGATTTTACGATACCGATACCCCTGCTGAATTTTGACT
GGACTTTGGACTTTTCTTTCTGCCAACCGATTTGATTTTACGATACCTAT
ACCCCTGCTGAATTTTGACTGGACTTTGGACTTTTCTTTCTGCCAACCGA
TTTGATTTTACGATACCGATACCCCTGCTGAAATTTGACTGGACTTTAGA
CTTTCCTTTCTGCCAACCGATTTGATTTTACGATACCGATACCACTGCTG
AATTTTGACTGGACTTTAGACTTTCCTTTCTGCCAACCAATTTGATTTTA
CGATACCGATACCCCTGCTGATTTTGTTTATTGAGTTAATGTTATTGAGT
CATGGAAGGTCATATTAAAAACCTAAAACTAATCTGCAGAATGTGTGGTT
TGAAAAGTCATCAAAAAGATTACAAAAACCCCAAATCAGTTATGGAGTAT
TCTGCCATTATTAAACAGGTTTTTAAATTGAATGTCACCGAGGAAAATGA
ATCAATTTTTTCAAAAGTGTTATGCAAACGTTGTCACATGAAGTTATACC
GCTTAAAAAATAAAAATTTAGACATTCCACCCGATGAACTTACATCACAT
GGTGACAGTTTTTTTGAGTTCAGACCACACAGTGAAGAATGTTATGTATG
CACTTTAGCTTCAAAGCGAGGACCAGGAATCAAGAGACCAAAACTGTTCA
ATCTCAAAGAGGAGATAAAACATCTAAAAGGATATACTACACTTGAGATT
GAAAATGAGATGCATATTACCGATATTGATCGTCTAGGAAAGGCTATTTG
TATTAAAACCCTCATTATTGATGTTAATGAGAAAACCTGGAAATTTCATG
CACTAAATCGTTATGTATCATCTCCTTTTTTGATAGATGATGTTTTGCTA
CCTTCAACGATCNATCGTTATGTATCATCTCCTTTTTTGATAGATGATGT
TTTGCTGCCTTCAACGATCGACAATTTGGTACAACTTAAGTTGGTATTTG
AACTATTTTCTAAACCACTTTGTTGTGGGAATTATGATTTTCCTACCCTG
ATTGAATCAAAAATTTGTGATGCTAGGAATTTTGAATCCAATGATGGAAT
NGGTACAACTTAAGTTGGTATTTGAACTATTTTCTAAACCACTTTGTTGT
GGGAATTATGATTTTCCTACCCTGATTGAATCAAAAATTTGTGATATGGA
ATTTTGAATCCAATGATGGAAATGTGACTGGTCGAATTGAATCTTATAGC
GGAGATTCTTTGACAGACTTAACTACCATAAGGCATTCAAATTGCACAGT
TTTAATAGCAAATGAACGGGAGAGATGTGACATATGTAATAGTTATAGAG
CAGCTTTACATGCAATGCAGTCGCGAAAACGAAACAGCACAGGAGAGGTT
AGTGAATACACCAATGACCGATACCTCAATGTGCAGCAGTTAAGAGAAAA
ACTGCAAAAGTATGAAACTGAAAGAAAGGCATTAAAGTCAAAGATAAGGA
GGATGGATGATAGGATAAAAAGATGTGTTATGGAAGACGGTGTCACCTTA
GATGGAGAGCAATATGATATTTTAAAACAGACAGTTGAGGACAAAGAAAA
TCCATTTGGTGAGGACAGTCCACAACACTTATTATGGGAGCAACAAAAAA
AATATGCTGCATTAAAAGACAAACNCACAACACTTATTATGGGAGCAACA
GAAAAAGTATGCTGCATTAAAAGACAGATGAGGTATGAGGTGGCACCCTT
TGATTATAAGATGGTGTATTGGGATCTACCTTAAAAGTCCAGGGACATAC
AAAGGACAATTACAGCAATTTTTGAATCTGCCATCAAAGAACACCTTACT
AAAATACATTAACTATACTGATCCTGGGTGTGGTTTCAATCCTGACACTA
TTGCAAATATTGCCAGACAATTTGACGCCCTTGAAAAACCTCATCAAAGT
TTTGTTTCCTTGGTTGTTGATGAAATGAAGATCAAGAGTGGGCTTTGTTT
CAGCACCTCTACTGGGAAAATTGTTGGTTTGTGTGAAGAAGGGTCTATAA
ATGATCTTCTGTCCGAATTTGAGCTTAAATACAGTGAAGAGGAGTCTGAA
AACCAACGCCCCCTTGACAGTACCGACAGGGAACTTGCTAGCTATGCCAC
AGCACTCATGGTCAGAGGAATTTCTTCAAACTTATTTTATGTCTTTGGAC
ACTTTGCTTCCAGCTCTGGAATGACAAGCAGTCAGCTGTACCATGTTATT
TGGGAGGGTATCAGTTTATTGGAGTCCATTGATTTGAAGGTGTTGGCCAT
AGTTGCCGATGGTGCCTCAACAAACCGAAAGTTTTTCAAACTCCATAATT
GGGAAACGAAAGAAAACTTTAGTCCAGAAAATGTTATCTATTGGACATGG
AATGAATGTTGCCCAAGTATTTTTTTAATTATATTATTTTTGCTCTGTAT
CCCACAATATTATTGTGTCTATCTTGTCCACAAATATCAACTAAAGGCCA
AAAATCTGTAAAATGTAAAATTATTAAGGTATATGCCGCCAGCCATAACA
CAGTCATTAAAAAGGTAATGAAGAATAGAGTGATACTTCATATTTTCTTG
GTTTTTAATGGTTTACTTTTCATTGCAGCTCGAAAATTGTATTTCATATG
TGATCCTCCCCATCTGATGAAAACCACCAGAAACAACTTGGAGAAGTCAA
GCTCAAAGTCTACTTCTAGAAATCTAATGGTATGTAATTCAATATAAACT
AATTACCACAATCAAAGAGGAGACTTCTATGTTGTTGTGATATTTTAAAA
CTCATTTCAATAACTTAACTTTTTTTTTTTCTGTTTTTAGTGTGATGGTC
AAAGTTTATCCTGGGGTCAAATAATAAATCTTTATGAATGGGATTTAGGG
ATGGAGAGAGATGCCATTGGTCTGACAATGGGTCACCATTTGACTGAGGA
GCATATCAATTTGAATCCGAGATCACGCATGAGAGTTTACTTAGCAGTGC
AAGTAAGTGAATCAAGATTGATTTTTTAGCTTTTCATCTCTTAAAAATTA
TTTGATAAAAATTGATTTGAATGATGTTATTTTAATGTTACTTTTACCAT
TGAATTTTATGCATATTATTTTGTATAAAAAACATGAAATTTGATTTTCA
GAGGCTCCAATTTCTTTAACTTTTTTTTGCACTGTAAGCCTCAAATTATT
TATTTCCTATTCTAGAAGTGTTTTAGTCAATTTTAGCTTTAGTCTGATTT
TATTTTGACATTTCTGACAAGAATTAAAAACAGTTCAAGAACAAGCCTAA
AGACTAGAATGTGTAATTATTTGGCCATTGGCTCATTGTTCTTATAAAAC
TGTTCGTATAAAAAGAGTGTATGTAAATGCATTTGTATTAATTAGCCATT
AAAAATTACACAGATTATGTACATTTTTTTTAGGTTCTCAGTGCTACTGT
AGTCAACATGTTGGATGAGCAGGATCTCCATACCACAAAATCTTTGAGGA
CATTTATTTCCCACATGAACAGATTCTTCGATTGTTTAAACGTCTCCAAG
TCTGATGAAAAATCTAACAACCTAGATAAGCACAAGTACAGGGGAGCAGA
CGACGAACGCTTTGGGGTAAGTATTAACTTTGGCTCATGTTTTCTTATCA
TTCTTTTTTAAATCCATCCCCCCCGAAGAAAAAAAATCCTGTAGTTCCCC
CTCCTTGAGAAGCACTTTGCCCCCCCCCGTAGCAGTTTTCTGTAGAAAAA
ACAAGGGGTCACTATGTAAAGGAGATATTTTTTTAGGTTCATGGTAAACT
TCTGACAATAATCGAACATATTTTTTACTTATTCTTTCTACAGTGGTTGG
TCACAACATTTTTGAAGTACCTTAATGATTGGGAGGCGCACTGCTACAGC
ATCCCAAATTTGACGAAAATTGAACAATCAAAATTATGTCTCAGTCACCA
AACACTGGAAGGACTTCGAATAACAGGTAAATTCTATTGCAAACTCAATT
TAATTTAGAAAATTGTATAACGAAATCGCAATATCTTAACCAATAGATGA
AAAATCTTCCAAGAGCTAATAATAAGCTCATGGACATGATAGCCTTAGTC
TGATGTTTGAACCCAGGACCCAGACCTTGACGACCAACGCTTGAGTTTTG
AAATAATTGTACCCTTTCAGATACAAAAACTTATACCTTTTTCCGAATTT
TACCTAAAGAGTAACCCTCACGGGTGTTAAGAATTTGTTTTGAATACATG
TCATTTTTGTATTTTGATTATAGTTCGTTCATTCATCGAAGTATCAAAAG
TGATGTTCAACGAAGGTGCCAAATATATTCTATCAGAGAAATTAAGTCAG
GATCCACTTGAGGAATATTTTGGGAAGCAGAGAATGCGACTCGGATGTAA
TGAGAATCCAACGCTTAGTCAGTTTAATTTTAATGCTCTCGCAATCGGAG
TTGCTGGCGATTTATTGGTTCGACCTGAAGGGAACAGTCGGGGTAAACAT
AACGAGCAGAAAATCATCGACGTTAACGATATGTCACTTCCCCCCAAAAA
GAAGACAAAACCTTCTTAAAAACCACTCAGTACAAACAATCGAAGTTTAT
AAACATTTTAGAATTTTTAATCCTGATGATAAGCGAAACTGTCATAGCAG
CTAAATAATTTTTTGTCTGTTCTTTACTGATTGATATAATTTTGTTTATG
AATTTTTGTCAACTGAACAATAATATTACATATTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036861XLOC_036861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058510-exon-scaffold_311-1575043694:35446..35998TCONS_00058510-exon-scaffold_311-1575043694:35446..35998Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1575043694:32570..32670TCONS_00058510-exon-scaffold_311-1575043694:32570..32670Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1575043694:32297..32458TCONS_00058510-exon-scaffold_311-1575043694:32297..32458Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1575043694:31683..31865TCONS_00058510-exon-scaffold_311-1575043694:31683..31865Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1575043694:31323..31455TCONS_00058510-exon-scaffold_311-1575043694:31323..31455Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1575043694:30561..31025TCONS_00058510-exon-scaffold_311-1575043694:30561..31025Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:35446..35998TCONS_00058510-exon-scaffold_311-1510915933:35446..35998Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:32570..32670TCONS_00058510-exon-scaffold_311-1510915933:32570..32670Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:32297..32458TCONS_00058510-exon-scaffold_311-1510915933:32297..32458Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:31683..31865TCONS_00058510-exon-scaffold_311-1510915933:31683..31865Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:31323..31455TCONS_00058510-exon-scaffold_311-1510915933:31323..31455Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1510915933:30561..31025TCONS_00058510-exon-scaffold_311-1510915933:30561..31025Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:35446..35998TCONS_00058510-exon-scaffold_311-1491911889:35446..35998Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:32570..32670TCONS_00058510-exon-scaffold_311-1491911889:32570..32670Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:32297..32458TCONS_00058510-exon-scaffold_311-1491911889:32297..32458Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:31683..31865TCONS_00058510-exon-scaffold_311-1491911889:31683..31865Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:31323..31455TCONS_00058510-exon-scaffold_311-1491911889:31323..31455Clytia hemisphaericaexon
TCONS_00058510-exon-scaffold_311-1491911889:30561..31025TCONS_00058510-exon-scaffold_311-1491911889:30561..31025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:30561..35998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.47219	2.17011	6.78372	5.59938	3.36089	2.02197	6.63008	4.21721	2.0706	2.22774	0.0397599	0.10903	0.134316	0.0786685	0	0	0.0182733	0.0723253	0.0586139	0.0266443	2.91384	3.0572	0	0	0	0.0289045
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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